# List of top-scoring protein chains for T0362.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2cyeA 133 7.59e-11 1s5uA 138 2.33e-10 d.38.1.1 98573 1njkA 156 5.38e-10 d.38.1.1 85818 2av9A 147 8.13e-10 1z54A 132 1.83e-09 1yliA 153 1.53e-08 2aliA 158 1.66e-08 1vpmA 169 2.34e-08 2gf6A 135 5.17e-08 1y7uA 174 2.25e-07 2gvhA 288 6.00e-07 1lo7A 141 7.76e-07 d.38.1.1 74144 1lo9A 141 9.97e-07 d.38.1.1 74146 2essA 248 3.10e-05 1u1zA 168 2.77e-04 d.38.1.6 107602 2h4uA 145 2.80e-04 2cy9A 140 4.24e-04 2b3nA 159 7.05e-04 1zkiA 133 7.90e-04 1wluA 136 1.16e-03 2fs2A 151 2.81e-03 1psuA 140 2.83e-03 d.38.1.5 88285 1iq6A 134 3.98e-03 d.38.1.4 76755 1ixlA 131 5.44e-03 d.38.1.5 90717 2b6eA 146 4.29e-02 1o0iA 138 4.92e-02 d.38.1.5 86532 1z6bA 154 1.53e-01 1zhgA 139 1.53e-01 2cwzA 141 1.66e-01 1t82A 155 1.78e-01 d.38.1.5 106639 1q6wA 161 2.29e-01 d.38.1.4 96000 1c8uA 285 5.31e-01 1c8uA d.38.1.3,d.38.1.3 38547,38548 1q4uA 151 5.50e-01 d.38.1.5 95828 1sh8A 154 1.80e+00 d.38.1.5 105549 2bdvA 231 2.87e+00 2fl8A 602 3.58e+00 1vh9A 149 4.04e+00 d.38.1.5 100653 1yocA 147 7.01e+00 1zxkA 98 7.23e+00 1te5A 257 9.56e+00 d.153.1.1 106795 2a4eA 215 1.02e+01 2a62A 322 1.11e+01 1vh5A 148 1.11e+01 d.38.1.5 100642 1k77A 260 1.22e+01 c.1.15.5 72096 2a4cA 99 1.36e+01 2cdhS 248 1.45e+01 1sbkA 144 1.50e+01 d.38.1.5 98791 1s9cA 298 1.53e+01 1eg0B 148 1.64e+01 1pkp i.1.1.1 45808 1pkp 150 1.65e+01 1pkp d.14.1.1,d.50.1.2 37551,38787 1dv4E 145 1.67e+01 i.1.1.3 45875 2f4pA 147 1.86e+01 2bi0A 337 2.33e+01 2f4lA 297 2.59e+01 1u83A 276 2.81e+01 c.1.27.1 107732 1j5uA 136 2.97e+01 d.208.1.1 71584 1af6A 421 3.33e+01 2mprA f.4.3.2 43772 1ex9A 285 3.39e+01 1cvl c.69.1.18 34785 1khbA 625 3.43e+01 c.91.1.1,c.109.1.1 68606,68607 1rf1C 311 3.49e+01 d.171.1.1,h.1.8.1 97351,97352 2fibA 269 3.54e+01 3fib d.171.1.1 42457 1grj 158 3.57e+01 1grj a.2.1.1,d.26.1.2 15691,38433 3fib 249 3.60e+01 3fib d.171.1.1 42455 1szzA 177 3.60e+01 2eiaA 206 3.61e+01 1eia a.28.3.1,a.73.1.1 16949,18329 1n86C 324 3.62e+01 d.171.1.1,h.1.8.1 80280,80281 1eia 207 3.62e+01 1eia a.28.3.1,a.73.1.1 16951,18331 1fzcC 319 3.62e+01 3fib d.171.1.1,h.1.8.1 42461,45592 1re3C 311 3.63e+01 d.171.1.1,h.1.8.1 104894,104895 1rcqA 357 3.64e+01 b.49.2.2,c.1.6.1 104882,104883 1y6hA 177 3.69e+01 1pg4A 652 3.71e+01 e.23.1.1 88067 1ny71 189 3.94e+01 1vmkA 277 4.37e+01 1e6yA 569 4.45e+01 1mroA a.89.1.1,d.58.31.2 18529,39447 1oysA 245 4.88e+01 d.14.1.4,d.101.1.1 93758,93759 1oypA 245 5.07e+01 d.14.1.4,d.101.1.1 93734,93735 1nkgA 508 5.52e+01 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 1hd0A 75 5.74e+01 1ha1 d.58.7.1 39188 1x4zA 121 5.80e+01 1vorV 113 5.90e+01 2davA 126 5.93e+01 2d3oS 115 5.95e+01 1qouA 181 5.96e+01 1qouA b.17.1.1 23707 1f8rA 498 6.12e+01 1f8rA c.3.1.2,d.16.1.5 30410,37974 1ckv 141 6.30e+01 1ckv d.137.1.1 41452 1k8kB 394 6.47e+01 c.55.1.1 68307 1ah9 71 6.48e+01 1ah9 b.40.4.5 25330 1eluA 390 6.94e+01 1elqA c.67.1.3 34434 1lilA 212 7.00e+01 8fabA b.1.1.1,b.1.1.2 20557,21466 1nfdE 212 7.03e+01 8fabA b.1.1.1,b.1.1.2 20186,21202 1n2tA 386 7.08e+01 c.67.1.3 79858 1deqC 411 7.11e+01 i.9.1.1 45995 1nfiA 301 7.11e+01 1a3qA b.1.18.1,b.2.5.3 21942,22455 2esrA 177 7.34e+01 1b9lA 120 7.38e+01 1b9lA d.96.1.3 40665 1k32A 1045 7.42e+01 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1mejA 223 7.50e+01 c.65.1.1 79029 1gwz 299 7.51e+01 2shpA c.45.1.2 32685 1zovA 386 7.52e+01 1tie 172 7.69e+01 1wba b.42.4.1 25592 1n6eA 1071 7.71e+01 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 1tbuA 118 8.25e+01 1xxdC 142 8.38e+01 1txqA 93 8.46e+01 1wguA 136 8.46e+01 1vscA 196 8.54e+01 1vcaA b.1.1.3,b.1.1.4 21651,21687 1ij9A 196 8.55e+01 1vcaA b.1.1.3,b.1.1.4 62482,62483 1q3tA 236 8.56e+01 c.37.1.1 104525 1n8oE 142 8.67e+01 b.16.1.1 80303 1vcaA 202 8.76e+01 1vcaA b.1.1.3,b.1.1.4 21649,21685 1nviD 81 8.79e+01 d.15.3.1 86241 1fm0D 81 8.81e+01 1fmaD d.15.3.1 37642 1outB 146 8.86e+01 1cg5B a.1.1.2 15579 1gawA 314 8.87e+01 1fnc b.43.4.2,c.25.1.1 25643,31533 1frfL 564 8.87e+01 1h2rL e.18.1.1 43300 1yrqH 549 9.00e+01