# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2cyeA 133 1.09e-18 1z54A 132 2.60e-17 1s5uA 138 2.92e-17 d.38.1.1 98573 2aliA 158 1.25e-15 1yliA 153 1.59e-14 2gf6A 135 4.22e-14 1vpmA 169 8.65e-14 1lo7A 141 6.35e-13 d.38.1.1 74144 2essA 248 7.24e-12 2gvhA 288 7.21e-11 2h4uA 145 1.28e-09 1wluA 136 5.04e-09 1zkiA 133 9.60e-09 1j1yA 136 1.17e-08 d.38.1.5 90776 2fs2A 151 2.41e-08 1ixlA 131 2.49e-07 d.38.1.5 90717 1o0iA 138 1.04e-06 d.38.1.5 86532 2b3nA 159 4.22e-06 1q4uA 151 4.75e-06 d.38.1.5 95828 1z6bA 154 1.04e-05 1c8uA 285 1.35e-05 1c8uA d.38.1.3,d.38.1.3 38547,38548 2cwzA 141 2.37e-05 1vh5A 148 2.82e-05 d.38.1.5 100642 1t82A 155 5.31e-05 d.38.1.5 106639 1iq6A 134 1.63e-04 d.38.1.4 76755 1sh8A 154 2.31e-04 d.38.1.5 105549 1yocA 147 3.19e-04 1tbuA 118 2.61e-02 2bi0A 337 2.88e-02 1mkaA 171 1.17e-01 1mkaA d.38.1.2 38543 2bc4A 211 1.99e-01 2bdvA 231 4.48e-01 1yycA 174 6.23e-01 2bm3A 166 7.89e-01 1txqA 93 8.60e-01 1w9hA 427 1.44e+00 1te5A 257 2.16e+00 d.153.1.1 106795 1pn2A 280 2.18e+00 d.38.1.4,d.38.1.4 94930,94931 1xgsA 295 2.54e+00 1bn5 a.4.5.25,d.127.1.1 16216,41153 1k32A 1045 4.20e+00 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1sx5A 244 4.80e+00 c.52.1.2 99023 2as0A 396 5.69e+00 1jyaA 130 5.74e+00 d.198.1.1 67453 1zxkA 98 5.81e+00 1hn0A 1021 6.79e+00 a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2 83616,83617,83618,83619 1d4oA 184 7.07e+00 1d4oA c.31.1.4 31748 1xi1A 575 7.12e+00 3fib 249 7.26e+00 3fib d.171.1.1 42455 1f39A 101 7.29e+00 1umuA b.87.1.1 28386 1mbyA 88 7.39e+00 d.223.1.1 78931 1ww7A 160 7.46e+00 1g79A 218 8.04e+00 1ci0A b.45.1.1 25752 1kzfA 230 8.56e+00 d.108.1.3 73354 1vdmA 153 8.71e+00 1iicA 422 8.79e+00 1nmtA d.108.1.2,d.108.1.2 62422,62423 1y8qA 346 9.55e+00 3pmgA 561 1.00e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1mdc 133 1.09e+01 1hmt b.60.1.2 27198 1j1bA 420 1.12e+01 d.144.1.7 90758 1esxA 96 1.16e+01 1esxA j.11.1.1 59501 1vprA 374 1.19e+01 2eifA 136 1.19e+01 1bkb b.34.5.2,b.40.4.5 24607,25339 1ylxA 103 1.27e+01 1gz8A 299 1.29e+01 d.144.1.7 83405 1tyjA 170 1.30e+01 1l0wA 580 1.46e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1zhxA 438 1.47e+01 1m3sA 186 1.55e+01 c.80.1.3 78573 1jeoA 180 1.61e+01 c.80.1.3 66611 1zxfA 155 1.67e+01 1noa 113 1.71e+01 2mcm b.1.7.1 22208 1n0wB 35 1.72e+01 j.97.1.1 79773 1xc3A 302 1.73e+01 1q7lA 198 1.75e+01 c.56.5.4 96044 2cu3A 64 1.75e+01 1xocA 520 1.76e+01 1dqeA 137 1.76e+01 1dqeA a.39.2.1 17388 1qxyA 252 1.78e+01 d.127.1.1 96565 1jhfA 202 1.79e+01 a.4.5.2,b.87.1.1 63057,63058 1wxcB 134 1.79e+01 1g87A 614 1.83e+01 a.102.1.2,b.2.2.2 83275,83276 1xpkC 388 1.85e+01 2f4lA 297 1.85e+01 1xpmA 396 1.85e+01 1dnlA 199 1.95e+01 1ci0A b.45.1.1 25753 1kt6A 183 1.98e+01 b.60.1.1 84466 1gqeA 365 2.01e+01 e.38.1.1 70351 1vjzA 341 2.02e+01 c.1.8.3 100838 1w66A 232 2.06e+01 1ga6A 372 2.12e+01 1ga1A c.41.1.2 32556 1gotB 340 2.15e+01 1tbgA b.69.4.1 27648 2axoA 270 2.15e+01 1aym3 238 2.18e+01 1aym3 1j09A 468 2.21e+01 a.97.1.1,c.26.1.1 77025,77026 2h3jA 75 2.31e+01 1yemA 179 2.42e+01 2fi9A 128 2.47e+01 1hr0W 71 2.54e+01 1ah9 b.40.4.5 25329 1s68A 249 2.56e+01 d.142.2.4 98591 1vavA 222 2.66e+01 b.29.1.18 108472 1hqkA 154 2.72e+01 c.16.1.1 65902 1erjA 393 2.78e+01 1erjA b.69.4.1 27660 2bcjB 340 2.79e+01 1nzjA 298 2.80e+01 c.26.1.1 92377 2f96A 224 2.84e+01 1n67A 359 2.95e+01 b.2.3.4,b.2.3.4 85354,85355 1nnwA 252 2.97e+01 d.159.1.5 80674 2a8jA 420 2.97e+01 2f71A 298 2.99e+01 1wcdJ 441 3.00e+01 1t6cA 315 3.02e+01 c.55.1.8,c.55.1.8 106558,106559 2tnfA 156 3.05e+01 2tnfA b.22.1.1 23880 1hq0A 295 3.06e+01 1hzgA d.194.1.1 61122 2brcA 214 3.16e+01 1v93A 296 3.17e+01 c.1.23.1 100532 1vcaA 202 3.17e+01 1vcaA b.1.1.3,b.1.1.4 21649,21685 2df7A 458 3.18e+01 1tqyB 415 3.19e+01 c.95.1.1,c.95.1.1 107247,107248 1fm0D 81 3.25e+01 1fmaD d.15.3.1 37642 1iqzA 81 3.26e+01 d.58.1.4 66281 1pcfA 66 3.29e+01 1pcfA d.18.1.1 38142 1tuaA 191 3.29e+01 d.51.1.1,d.51.1.1 107321,107322 1i2sA 282 3.31e+01 e.3.1.1 71104 1j6oA 268 3.31e+01 c.1.9.12 77088 1yb3A 175 3.39e+01 1qusA 322 3.39e+01 1ltm d.2.1.6 36991 1i1jA 108 3.40e+01 1i1jA b.34.2.1 61531 1b3aA 67 3.43e+01 1b3aA d.9.1.1 37410 1bs0A 384 3.45e+01 1bs0A c.67.1.4 34490 1lshA 1056 3.46e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1wmmA 145 3.47e+01 1vg8A 207 3.48e+01 c.37.1.8 108606 1te2A 226 3.54e+01 c.108.1.6 106792 1qg7A 67 3.63e+01 1a15A d.9.1.1 37449 2aboA 136 3.64e+01 1nxuA 333 3.77e+01 c.122.1.1 86389 1xfrA 128 3.82e+01 1f5mA 180 3.86e+01 1f5mB d.110.2.1 40895 2mcm 112 3.89e+01 2mcm b.1.7.1 22207 2g1lA 104 4.05e+01 1zz1A 369 4.13e+01 1tuoA 464 4.13e+01 1rl4A 188 4.31e+01 d.167.1.1 97636 1ec7A 446 4.35e+01 1bqg c.1.11.2,d.54.1.1 29218,38862 2a6zA 222 4.37e+01 1r9wA 145 4.37e+01 d.89.1.2 97264 1tc5A 194 4.39e+01 c.110.1.1 106752 1gk9B 557 4.43e+01 1xubA 298 4.47e+01 1ytaA 180 4.47e+01 1zboA 210 4.50e+01 1gnxA 479 4.55e+01 c.1.8.4 76241 1t4wA 196 4.63e+01 b.2.5.2 106427 1g5hA 454 4.70e+01 1g5hA c.51.1.1,d.104.1.1 60270,60271 1nh2D 121 4.78e+01 a.32.1.1,b.56.1.1 91876,91877 2as9A 210 4.82e+01 2f5uA 447 4.87e+01 1yqgA 263 4.88e+01 1q8rA 120 5.00e+01 d.79.6.1 96225 1vzyA 291 5.01e+01 1m4iA 181 5.04e+01 d.108.1.1 74457 1u5xA 140 5.11e+01 1l1sA 113 5.11e+01 c.114.1.1 73484 1qftA 175 5.15e+01 1qftA b.60.1.1 27151 1j5wA 298 5.18e+01 d.104.1.1 71589 1pprM 312 5.23e+01 1pprM a.131.1.1,a.131.1.1 19502,19503 1u7kA 131 5.28e+01 2bnmA 198 5.28e+01 1oh0A 131 5.38e+01 d.17.4.3 87004 1o6vA 466 5.38e+01 b.1.18.15,c.10.2.1 81099,81100 1zhvA 134 5.49e+01 2bcfA 276 5.52e+01 1oaqH 121 5.53e+01 b.1.1.1 92707 2aalA 131 5.53e+01 1cz4A 185 5.68e+01 1cz4A b.52.2.3,d.31.1.1 26934,38468 1djxA 624 5.74e+01 1djxB a.39.1.7,b.7.1.1,c.1.18.1 17342,23159,29587 1le6A 123 5.77e+01 a.133.1.2 73862 2bywA 418 5.78e+01 1tlyA 278 5.80e+01 f.4.6.1 107143 1w6nA 134 5.84e+01 1m3yA 413 5.85e+01 b.121.2.3,b.121.2.3 78579,78580 1pjhA 280 5.90e+01 c.14.1.3 94761 2b06A 155 5.92e+01 1mw9X 592 5.97e+01 e.10.1.1 91480 1wozA 177 5.98e+01 1k77A 260 5.99e+01 c.1.15.5 72096 1f3uB 171 6.00e+01 1f3uB b.65.1.1 27525 1xeuA 263 6.07e+01 1y0kA 209 6.07e+01 1iujA 106 6.10e+01 d.58.4.5 90701 1exrA 148 6.12e+01 1cll a.39.1.5 17299 1pa1A 310 6.12e+01 c.45.1.2 94404 1ogaD 215 6.19e+01 b.1.1.1,b.1.1.2 86990,86991 1gy6A 127 6.23e+01 d.17.4.2 70736 1h6uA 308 6.27e+01 b.1.18.15,c.10.2.1 65688,65689 1uu1A 335 6.28e+01 c.67.1.1 99993 1rjcA 137 6.29e+01 2hgsA 474 6.30e+01 2hgsA c.30.1.4,d.142.1.6 31722,75997 1w9yA 319 6.40e+01 1q15A 503 6.49e+01 c.26.2.1,d.153.1.1 95538,95539 1zowA 313 6.50e+01 2fpeA 62 6.50e+01 1mk4A 157 6.53e+01 d.108.1.1 84979 1ne8A 117 6.54e+01 b.34.6.2 80424 1okcA 297 6.55e+01 f.42.1.1 93248 2cw5A 255 6.61e+01 1rz1A 161 6.70e+01 b.45.1.2 98124 1n0wA 243 6.73e+01 c.37.1.11 79772 2frgP 106 6.74e+01 1ug3A 339 6.75e+01 1n4xH 120 6.76e+01 b.1.1.1 85324 1fm4A 159 6.77e+01 1bv1 d.129.3.1 76186 1g7nA 131 6.87e+01 b.60.1.2 83274 1uxzA 131 6.91e+01 b.18.1.10 100170 1h2eA 207 6.96e+01 c.60.1.1 70857 1wk2A 121 6.96e+01 1njhA 119 6.96e+01 b.128.1.1 85787 1b65A 375 7.05e+01 1b65A d.154.1.1 42020 1k78A 149 7.07e+01 a.4.1.5,a.4.1.5 68255,68256 1g38A 393 7.09e+01 2admA c.66.1.27 60235 1j05B 121 7.11e+01 b.1.1.1 90736 1smoA 119 7.14e+01 b.1.1.1 105764 1lk2A 274 7.21e+01 b.1.1.2,d.19.1.1 91056,91057 2fwmX 250 7.22e+01 2c8mA 262 7.23e+01 2bdeA 470 7.30e+01 1ztuA 341 7.33e+01 1gqpA 221 7.34e+01 b.18.1.9 70372 1xjvA 294 7.40e+01 1jmtA 104 7.42e+01 d.58.7.3 63180 1m1lA 236 7.43e+01 d.260.1.1 91166 1sra 151 7.45e+01 1sra a.39.1.3 17190 1ckaA 57 7.47e+01 1ckaA b.34.2.1 24459 2fr2A 172 7.48e+01 1wznA 252 7.49e+01 1nszA 347 7.50e+01 b.30.5.4 80724 1e25A 282 7.53e+01 1e25A e.3.1.1 42731 1widA 130 7.56e+01 2fdiA 211 7.63e+01 1zw8A 64 7.65e+01 2bgiA 272 7.65e+01 2bwnA 401 7.78e+01 1m3qA 317 7.78e+01 a.96.1.3,d.129.1.2 91184,91185 2cw9A 194 7.78e+01 2gtqA 867 7.79e+01 1drw 273 7.81e+01 1drw c.2.1.3,d.81.1.3 30057,39972 1yq2A 1024 7.86e+01 1j5sA 463 7.87e+01 c.1.9.8 71580 1iznA 286 7.98e+01 e.43.1.1 83847 1hjrA 158 8.04e+01 1hjrA c.55.3.6 33727 1e2wA 251 8.05e+01 1hcz b.2.6.1,b.84.2.2 22466,28252 1kopA 223 8.13e+01 2cba b.74.1.1 27966 1vqoX 92 8.17e+01 1vbiA 344 8.18e+01 1z52A 470 8.23e+01 2fhfA 1083 8.34e+01 2cbuA 468 8.53e+01 1gd0A 122 8.53e+01 1dptA d.80.1.3 39834 1gl4B 98 8.54e+01 b.1.1.4 65288 1xkpC 143 8.56e+01 1q33A 292 8.56e+01 d.113.1.1 95657 1t8kA 77 8.67e+01 a.28.1.1 106666 2ewtA 71 8.68e+01 1f0xA 571 8.71e+01 1f0xA d.58.32.2,d.145.1.1 39483,41746 1yopA 83 8.74e+01 1j5uA 136 8.76e+01 d.208.1.1 71584 1ka8A 100 8.79e+01 a.4.5.20 72241 1on2A 142 8.79e+01 a.4.5.24,a.76.1.1 87103,87104 1nu7D 282 8.80e+01 a.8.6.1,a.8.6.1 92191,92192 1yg9A 330 8.83e+01 1un3A 123 8.86e+01 d.5.1.1 99646 1xhnA 184 8.91e+01 1txkA 498 8.92e+01 b.1.18.2,b.30.5.9 107425,107426 2acmB 55 8.92e+01 1oe4A 247 8.92e+01 c.18.1.3 86895