# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2cyeA 133 5.81e-13 1s5uA 138 1.23e-12 d.38.1.1 98573 1z54A 132 6.26e-12 2aliA 158 1.65e-10 2gf6A 135 2.14e-10 1yliA 153 5.01e-10 1vpmA 169 9.97e-10 1lo7A 141 1.84e-09 d.38.1.1 74144 2essA 248 4.25e-08 2gvhA 288 7.20e-08 2h4uA 145 1.40e-06 1j1yA 136 9.82e-06 d.38.1.5 90776 1wluA 136 1.48e-05 1zkiA 133 2.68e-05 2fs2A 151 3.08e-05 1ixlA 131 5.89e-05 d.38.1.5 90717 2b3nA 159 6.32e-05 1o0iA 138 2.70e-04 d.38.1.5 86532 1iq6A 134 3.34e-04 d.38.1.4 76755 2cwzA 141 1.34e-03 1q4uA 151 1.88e-03 d.38.1.5 95828 1z6bA 154 2.03e-03 1c8uA 285 2.80e-03 1c8uA d.38.1.3,d.38.1.3 38547,38548 1t82A 155 3.59e-03 d.38.1.5 106639 1vh5A 148 4.50e-03 d.38.1.5 100642 1sh8A 154 4.03e-02 d.38.1.5 105549 1yocA 147 1.51e-01 1tbuA 118 2.17e-01 2bi0A 337 2.21e-01 1pn2A 280 1.04e+00 d.38.1.4,d.38.1.4 94930,94931 1zxkA 98 1.16e+00 1vjzA 341 2.31e+00 c.1.8.3 100838 1jeoA 180 2.44e+00 c.80.1.3 66611 2bm3A 166 2.58e+00 1fm0D 81 2.80e+00 1fmaD d.15.3.1 37642 1m3sA 186 2.82e+00 c.80.1.3 78573 1f3mA 80 3.06e+00 1f3mA j.66.1.1 46358 1j5uA 136 3.21e+00 d.208.1.1 71584 1f8rA 498 3.45e+00 1f8rA c.3.1.2,d.16.1.5 30410,37974 1mxmA 254 4.25e+00 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1k77A 260 5.58e+00 c.1.15.5 72096 1zxfA 155 5.67e+00 1u7kA 131 5.70e+00 1d4oA 184 6.64e+00 1d4oA c.31.1.4 31748 1vcaA 202 7.31e+00 1vcaA b.1.1.3,b.1.1.4 21649,21685 1d3yA 301 7.59e+00 1d3yA e.12.1.1 43252 1aihA 170 7.85e+00 1aihA d.163.1.1 42149 1z2iA 358 8.64e+00 1txqA 93 9.58e+00 1tyjA 170 1.15e+01 1e8yA 966 1.15e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 2c5rA 67 1.19e+01 1ox0A 430 1.20e+01 c.95.1.1,c.95.1.1 87495,87496 8fabA 212 1.25e+01 8fabA b.1.1.1,b.1.1.2 19772,20882 1v93A 296 1.26e+01 c.1.23.1 100532 2as0A 396 1.30e+01 1u8fO 335 1.33e+01 2f4lA 297 1.35e+01 1te5A 257 1.36e+01 d.153.1.1 106795 1nnxA 109 1.42e+01 b.40.10.1 92013 1yoeA 322 1.42e+01 1hr0W 71 1.45e+01 1ah9 b.40.4.5 25329 1nlbH 218 1.48e+01 b.1.1.1,b.1.1.2 80621,80622 1iqzA 81 1.51e+01 d.58.1.4 66281 1ug3A 339 1.72e+01 2b7uA 257 1.75e+01 1e2wA 251 1.76e+01 1hcz b.2.6.1,b.84.2.2 22466,28252 1kt6A 183 1.80e+01 b.60.1.1 84466 1dzkA 157 1.96e+01 1obpA b.60.1.1 27096 1jkoC 52 1.98e+01 a.4.1.2 66809 1se8A 301 2.01e+01 b.40.4.3 105448 1b8aA 438 2.02e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1q3iA 214 2.03e+01 d.220.1.1 104524 1oe4A 247 2.05e+01 c.18.1.3 86895 2ap1A 327 2.07e+01 1zvnA 99 2.09e+01 1jhfA 202 2.16e+01 a.4.5.2,b.87.1.1 63057,63058 1ww7A 160 2.23e+01 1vr5A 547 2.25e+01 1n0wB 35 2.31e+01 j.97.1.1 79773 1exrA 148 2.32e+01 1cll a.39.1.5 17299 2c5uA 375 2.33e+01 1w66A 232 2.41e+01 1aj8A 371 2.43e+01 1aj8A a.103.1.1 18900 1pp7U 131 2.44e+01 a.4.5.44 94973 1aohA 147 2.46e+01 1aohA b.2.2.2 22401 1xyiA 66 2.46e+01 2c8mA 262 2.48e+01 1iz6A 138 2.50e+01 b.34.5.2,b.40.4.5 76976,76977 2cu3A 64 2.50e+01 2aw4P 114 2.50e+01 2f42A 179 2.57e+01 2fi9A 128 2.59e+01 1n8vA 112 2.60e+01 a.118.21.1 85457 1wwuA 99 2.65e+01 1z2lA 423 2.69e+01 1zmdA 474 2.70e+01 2h3jA 75 2.72e+01 1cmcA 104 2.73e+01 1cmbA a.43.1.5 17462 1g87A 614 2.74e+01 a.102.1.2,b.2.2.2 83275,83276 2a72A 146 2.77e+01 1yrtA 364 2.80e+01 1vkkA 154 2.81e+01 d.109.1.2 108669 1e6yA 569 2.82e+01 1mroA a.89.1.1,d.58.31.2 18529,39447 2db9A 149 2.87e+01 1ztsA 139 2.91e+01 1l5pA 93 2.91e+01 d.15.4.1 73598 1uu1A 335 3.02e+01 c.67.1.1 99993 1ka8A 100 3.06e+01 a.4.5.20 72241 1vg8A 207 3.10e+01 c.37.1.8 108606 1xpmA 396 3.10e+01 1myn 44 3.12e+01 1gpt g.3.7.4 44172 1otvA 259 3.17e+01 a.132.1.4 93526 1l1sA 113 3.23e+01 c.114.1.1 73484 1wf3A 301 3.27e+01 1js8A 394 3.27e+01 a.86.1.1,b.112.1.1 67219,67220 1mjuL 219 3.32e+01 b.1.1.1,b.1.1.2 91304,91305 1xpkC 388 3.32e+01 1v6tA 255 3.33e+01 1w7lA 422 3.35e+01 c.67.1.1 109226 1vimA 200 3.35e+01 c.80.1.3 100758 1l0wA 580 3.36e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1nszA 347 3.47e+01 b.30.5.4 80724 1n9lA 109 3.49e+01 d.110.3.6 85468 2booA 247 3.50e+01 1gmlA 178 3.52e+01 c.8.5.2 70273 2as9A 210 3.56e+01 1s69A 124 3.58e+01 a.1.1.1 105305 1r8gA 372 3.59e+01 d.128.1.3 104845 1hq1A 105 3.62e+01 1dulA a.36.1.1 17120 1s4kA 120 3.67e+01 a.35.1.6 105254 1nkqA 259 3.69e+01 d.177.1.1 103862 1smoA 119 3.71e+01 b.1.1.1 105764 2a38A 194 3.84e+01 1jyaA 130 3.84e+01 d.198.1.1 67453 1i1jA 108 3.88e+01 1i1jA b.34.2.1 61531 1yf3A 259 3.92e+01 1gqeA 365 3.92e+01 e.38.1.1 70351 2rhe 114 3.94e+01 8fabA b.1.1.1 20523 1q7lA 198 3.98e+01 c.56.5.4 96044 1omrA 201 4.02e+01 a.39.1.5 93349 2bdvA 231 4.20e+01 1gk9A 260 4.23e+01 d.153.1.2 65246 1luzA 88 4.33e+01 b.40.4.5 74271 1j09A 468 4.34e+01 a.97.1.1,c.26.1.1 77025,77026 2aioA 269 4.34e+01 1uebA 184 4.36e+01 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 1vj1A 363 4.38e+01 b.35.1.2,c.2.1.1 100794,100795 1e19A 314 4.39e+01 1b7bA c.73.1.1 34967 2b1xA 470 4.39e+01 1aquA 297 4.39e+01 1aquA c.37.1.5 31942 1n4xH 120 4.55e+01 b.1.1.1 85324 1s7iA 124 4.57e+01 d.58.4.9 105353 1zw8A 64 4.75e+01 1rz1A 161 4.82e+01 b.45.1.2 98124 1paz 123 4.85e+01 1bqk b.6.1.1 22878 1k78A 149 4.86e+01 a.4.1.5,a.4.1.5 68255,68256 1uyjA 296 4.94e+01 f.8.1.2 108143 1bwwA 109 4.96e+01 8fabA b.1.1.1 20518 1tuoA 464 4.97e+01 1gxrA 337 5.03e+01 b.69.4.1 70722 1yopA 83 5.04e+01 1l7mA 211 5.09e+01 c.108.1.4 73664 1widA 130 5.13e+01 2f4pA 147 5.18e+01 1wocA 103 5.23e+01 1oaqH 121 5.27e+01 b.1.1.1 92707 1obbA 480 5.30e+01 c.2.1.5,d.162.1.2 86760,86761 1m1fA 110 5.45e+01 b.34.6.2 78401 2ct9A 208 5.47e+01 1y43B 173 5.47e+01 1j6oA 268 5.58e+01 c.1.9.12 77088 1zanL 214 5.60e+01 1nnwA 252 5.68e+01 d.159.1.5 80674 1qksA 567 5.68e+01 1qksA a.3.1.2,b.70.2.1 15951,27710 1e3oC 160 5.72e+01 1au7A a.4.1.1,a.35.1.1 59197,59198 2a3qA 170 5.75e+01 1zowA 313 5.78e+01 1dmhA 311 5.79e+01 1dmhA b.3.6.1 22633 1o2dA 371 5.79e+01 e.22.1.2 86591 1xfrA 128 5.81e+01 1rzfL 213 5.81e+01 b.1.1.1,b.1.1.2 98152,98153 1neu 124 5.83e+01 1neu b.1.1.1 19704 1t4wA 196 5.83e+01 b.2.5.2 106427 1zb9A 143 5.87e+01 1y8qA 346 5.96e+01 1a0p 290 6.01e+01 1a0p a.60.9.1,d.163.1.1 18105,42165 1y0yA 353 6.04e+01 1jbeA 128 6.05e+01 3chy c.23.1.1 62845 2lisA 136 6.07e+01 1lis a.19.1.1 16405 1w9yA 319 6.14e+01 1qusA 322 6.14e+01 1ltm d.2.1.6 36991 1nezG 128 6.18e+01 b.1.1.1 85592 1uzxA 169 6.19e+01 d.20.1.2 100238 2bsjA 133 6.19e+01 1u14A 172 6.25e+01 c.51.4.3 107579 1of5A 221 6.30e+01 d.17.4.2 86933 1wxcB 134 6.34e+01 1uxzA 131 6.36e+01 b.18.1.10 100170 1i31A 314 6.39e+01 1bw8A b.2.7.1 22481 1ejfA 125 6.39e+01 1ejfA b.15.1.2 23683 1ed8A 449 6.48e+01 1b8jA c.76.1.1 34988 2bhoA 130 6.48e+01 1y8aA 332 6.49e+01 1r6lA 239 6.70e+01 d.14.1.4,d.101.1.1 97153,97154 1puc 105 6.73e+01 1puc d.97.1.1 40675 1ujpA 271 6.76e+01 c.1.2.4 99462 1bsmA 201 6.83e+01 1avmA a.2.11.1,d.44.1.1 15780,38743 1ig5A 75 6.88e+01 4icb a.39.1.1 62363 1gu7A 364 6.92e+01 b.35.1.2,c.2.1.1 83321,83322 1kn6A 90 6.98e+01 d.58.3.3 72770 1vbiA 344 7.09e+01 1wmhA 89 7.10e+01 2fulA 178 7.10e+01 1e5pA 151 7.10e+01 1bj7 b.60.1.1 59272 1vhyA 257 7.11e+01 b.122.1.2,c.116.1.5 100714,100715 1auiB 169 7.11e+01 1auiB a.39.1.5 17325 2esrA 177 7.12e+01 1uj6A 227 7.12e+01 c.124.1.4,d.58.40.1 107898,107899 1m6sA 347 7.14e+01 c.67.1.1 78701 1fjlA 81 7.15e+01 2hddA a.4.1.1 16017 2bkdN 134 7.16e+01 1v32A 101 7.17e+01 a.42.1.1 100277 3fib 249 7.18e+01 3fib d.171.1.1 42455 1ummA 172 7.20e+01 a.3.1.1 107958 1zwyA 185 7.21e+01 1h5uA 842 7.22e+01 1a8i c.87.1.4 60655 1v7lA 163 7.26e+01 1kshB 152 7.28e+01 b.1.18.8 72915 1mkaA 171 7.33e+01 1mkaA d.38.1.2 38543 1akhA 61 7.36e+01 1akhA a.4.1.1 15980 1hqkA 154 7.44e+01 c.16.1.1 65902 1p3dA 475 7.47e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1knwA 425 7.53e+01 b.49.2.3,c.1.6.1 90969,90970 1pht 85 7.54e+01 1ckaA b.34.2.1 24483 1a2yA 107 7.57e+01 8fabA b.1.1.1 19926 1smxA 96 7.58e+01 b.40.4.5 105772 2cpgA 45 7.67e+01 2cpgA a.43.1.3 17455 2ftrA 108 7.70e+01 1oruA 195 7.74e+01 b.58.1.2 93464 1g1kA 143 7.78e+01 1aohA b.2.2.2 22404 1r69 69 7.80e+01 1r69 a.35.1.2 17028 2c8sA 172 7.80e+01 1wy1A 172 7.84e+01 1nxuA 333 7.85e+01 c.122.1.1 86389 1wisA 124 7.88e+01 1wdyA 285 7.88e+01 1r7lA 110 7.88e+01 d.277.1.1 104837 2awgA 118 7.90e+01 2bi7A 384 7.94e+01 1dqeA 137 7.98e+01 1dqeA a.39.2.1 17388 1k0iA 394 8.00e+01 c.3.1.2,d.16.1.2 67942,67943 1mqkL 120 8.04e+01 b.1.1.1 85054 1gtzA 156 8.06e+01 c.23.13.1 70539 2f96A 224 8.15e+01 1brt 277 8.18e+01 1brt c.69.1.12 34699 1o6aA 96 8.18e+01 b.139.1.1 92562 1oxxK 353 8.18e+01 b.40.6.3,c.37.1.12 93715,93716 2aieP 203 8.23e+01 1q2yA 140 8.30e+01 d.108.1.1 95655 2fd5A 180 8.33e+01 1ckaA 57 8.36e+01 1ckaA b.34.2.1 24459 1rreA 200 8.40e+01 d.14.1.10 97791 2fxqA 264 8.42e+01 1hqsA 423 8.52e+01 1iso c.77.1.1 61154 1q1aA 289 8.54e+01 c.31.1.5 95561 1wk2A 121 8.55e+01 2cwpA 112 8.56e+01 1ngzA 213 8.58e+01 b.1.1.1,b.1.1.2 80500,80501 1r3eA 309 8.68e+01 b.122.1.1,d.265.1.2 96907,96908 1q0xH 221 8.75e+01 b.1.1.1,b.1.1.2 95517,95518 2cwsA 237 8.77e+01 1ka2A 499 8.83e+01 d.92.1.5 77305 2ajuL 216 8.92e+01