# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2cyeA 133 2.45e-18 1s5uA 138 1.42e-17 d.38.1.1 98573 1z54A 132 7.83e-17 2aliA 158 7.88e-15 1yliA 153 1.96e-14 1vpmA 169 2.38e-13 2gf6A 135 7.76e-13 1lo7A 141 1.30e-12 d.38.1.1 74144 2essA 248 1.84e-11 2gvhA 288 2.48e-11 2h4uA 145 6.96e-09 1zkiA 133 1.36e-08 1wluA 136 3.05e-08 1j1yA 136 3.46e-08 d.38.1.5 90776 2fs2A 151 1.88e-07 1o0iA 138 1.02e-06 d.38.1.5 86532 2b3nA 159 1.44e-06 1ixlA 131 2.16e-06 d.38.1.5 90717 1t82A 155 1.73e-05 d.38.1.5 106639 2cwzA 141 2.60e-05 1q4uA 151 2.76e-05 d.38.1.5 95828 1vh5A 148 3.47e-05 d.38.1.5 100642 1z6bA 154 6.14e-05 1iq6A 134 7.90e-05 d.38.1.4 76755 1c8uA 285 1.02e-04 1c8uA d.38.1.3,d.38.1.3 38547,38548 1sh8A 154 3.02e-04 d.38.1.5 105549 1yocA 147 7.71e-04 1tbuA 118 2.38e-02 2bi0A 337 2.84e-02 2bdvA 231 3.04e-01 1zxkA 98 6.13e-01 2bc4A 211 6.43e-01 1te5A 257 1.01e+00 d.153.1.1 106795 1yycA 174 1.12e+00 1mkaA 171 1.12e+00 1mkaA d.38.1.2 38543 2bm3A 166 1.33e+00 1txqA 93 2.40e+00 1w9hA 427 2.47e+00 3fib 249 2.84e+00 3fib d.171.1.1 42455 1jeoA 180 3.01e+00 c.80.1.3 66611 2as0A 396 3.18e+00 2eifA 136 3.23e+00 1bkb b.34.5.2,b.40.4.5 24607,25339 1gsoA 431 3.63e+00 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1m3sA 186 3.74e+00 c.80.1.3 78573 1wxcB 134 4.34e+00 1pn2A 280 4.40e+00 d.38.1.4,d.38.1.4 94930,94931 1qxyA 252 5.57e+00 d.127.1.1 96565 1iicA 422 5.87e+00 1nmtA d.108.1.2,d.108.1.2 62422,62423 1fm0D 81 6.05e+00 1fmaD d.15.3.1 37642 2aalA 131 6.29e+00 1gotB 340 6.38e+00 1tbgA b.69.4.1 27648 1lshA 1056 6.39e+00 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 2bcjB 340 6.43e+00 2f4lA 297 7.48e+00 1ga6A 372 7.75e+00 1ga1A c.41.1.2 32556 1sx5A 244 8.28e+00 c.52.1.2 99023 3pmgA 561 8.70e+00 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1jyaA 130 9.85e+00 d.198.1.1 67453 1t4wA 196 1.02e+01 b.2.5.2 106427 1f39A 101 1.07e+01 1umuA b.87.1.1 28386 1k32A 1045 1.09e+01 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1xgsA 295 1.12e+01 1bn5 a.4.5.25,d.127.1.1 16216,41153 2fi9A 128 1.14e+01 1mbyA 88 1.15e+01 d.223.1.1 78931 1or0B 528 1.21e+01 1j1bA 420 1.22e+01 d.144.1.7 90758 1zxfA 155 1.23e+01 2f4nA 273 1.24e+01 1f3mA 80 1.34e+01 1f3mA j.66.1.1 46358 1vcaA 202 1.39e+01 1vcaA b.1.1.3,b.1.1.4 21649,21685 2ae5B 528 1.48e+01 1gz8A 299 1.57e+01 d.144.1.7 83405 1vjzA 341 1.62e+01 c.1.8.3 100838 1g87A 614 1.63e+01 a.102.1.2,b.2.2.2 83275,83276 1kt6A 183 1.68e+01 b.60.1.1 84466 1rl4A 188 1.70e+01 d.167.1.1 97636 1ylxA 103 1.74e+01 1jhfA 202 1.84e+01 a.4.5.2,b.87.1.1 63057,63058 1vavA 222 1.96e+01 b.29.1.18 108472 1j09A 468 2.08e+01 a.97.1.1,c.26.1.1 77025,77026 1lla 628 2.08e+01 1lla a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 1b65A 375 2.08e+01 1b65A d.154.1.1 42020 1iujA 106 2.08e+01 d.58.4.5 90701 1kzfA 230 2.09e+01 d.108.1.3 73354 1l0wA 580 2.12e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1dpjA 329 2.17e+01 1smrA b.50.1.2 26828 1vdmA 153 2.25e+01 2f96A 224 2.25e+01 1tc5A 194 2.29e+01 c.110.1.1 106752 2bg1A 494 2.35e+01 1qg7A 67 2.38e+01 1a15A d.9.1.1 37449 1b3aA 67 2.40e+01 1b3aA d.9.1.1 37410 1g7sA 594 2.52e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 1zboA 210 2.53e+01 1n67A 359 2.56e+01 b.2.3.4,b.2.3.4 85354,85355 2g1lA 104 2.57e+01 1u69A 163 2.89e+01 d.32.1.7 107699 1g7nA 131 2.90e+01 b.60.1.2 83274 1j9lA 247 2.93e+01 c.106.1.1 62762 1tyjA 170 2.98e+01 1zhxA 438 3.05e+01 1q3iA 214 3.08e+01 d.220.1.1 104524 1ed8A 449 3.16e+01 1b8jA c.76.1.1 34988 1dnlA 199 3.20e+01 1ci0A b.45.1.1 25753 1dqeA 137 3.27e+01 1dqeA a.39.2.1 17388 2gtqA 867 3.28e+01 1nkgA 508 3.30e+01 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 1aym3 238 3.34e+01 1aym3 1yg9A 330 3.35e+01 1g79A 218 3.35e+01 1ci0A b.45.1.1 25752 1qftA 175 3.39e+01 1qftA b.60.1.1 27151 1esxA 96 3.39e+01 1esxA j.11.1.1 59501 1xc3A 302 3.41e+01 1ww7A 160 3.51e+01 1mdc 133 3.61e+01 1hmt b.60.1.2 27198 1o6vA 466 3.73e+01 b.1.18.15,c.10.2.1 81099,81100 2aboA 136 3.74e+01 2bwqA 129 3.74e+01 1xeoA 168 3.77e+01 1wcdJ 441 3.80e+01 1xfrA 128 3.86e+01 1pa1A 310 3.90e+01 c.45.1.2 94404 1vrmA 325 3.90e+01 1g5hA 454 3.92e+01 1g5hA c.51.1.1,d.104.1.1 60270,60271 2f71A 298 3.93e+01 1hn0A 1021 3.98e+01 a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2 83616,83617,83618,83619 1pcfA 66 3.99e+01 1pcfA d.18.1.1 38142 2b06A 155 4.03e+01 1j6oA 268 4.04e+01 c.1.9.12 77088 1m1lA 236 4.08e+01 d.260.1.1 91166 2bsfA 176 4.09e+01 1xeuA 263 4.10e+01 1vprA 374 4.13e+01 2bsjA 133 4.18e+01 1wmmA 145 4.20e+01 1nzjA 298 4.22e+01 c.26.1.1 92377 1nszA 347 4.23e+01 b.30.5.4 80724 1hjrA 158 4.31e+01 1hjrA c.55.3.6 33727 1v04A 355 4.41e+01 b.68.6.2 100240 1yopA 83 4.42e+01 1b8aA 438 4.48e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1yemA 179 4.49e+01 1xi1A 575 4.53e+01 1w66A 232 4.62e+01 1xl7A 612 4.69e+01 1zvnA 99 4.72e+01 1l5aA 436 4.72e+01 c.43.1.2,c.43.1.2 75923,75924 1hq0A 295 4.76e+01 1hzgA d.194.1.1 61122 1njhA 119 4.83e+01 b.128.1.1 85787 1yqgA 263 4.83e+01 1m3yA 413 4.98e+01 b.121.2.3,b.121.2.3 78579,78580 1npsA 88 5.00e+01 1prs b.11.1.1 23622 1z7aA 308 5.08e+01 1vyfA 135 5.14e+01 b.60.1.2 108902 1qx4A 274 5.16e+01 b.43.4.2,c.25.1.1 104624,104625 1oohA 126 5.21e+01 a.39.2.1 93383 2f6eA 127 5.25e+01 1noyA 388 5.32e+01 1clqA c.55.3.5 33713 7taa 478 5.38e+01 7taa b.71.1.1,c.1.8.1 27778,28765 2h3jA 75 5.46e+01 1f35A 162 5.46e+01 1f35A b.94.1.1 59628 1nxuA 333 5.58e+01 c.122.1.1 86389 1zdzA 302 5.59e+01 1ifc 132 5.59e+01 b.60.1.2 27173 1o8vA 134 5.62e+01 b.60.1.2 86680 1qusA 322 5.63e+01 1ltm d.2.1.6 36991 1oh0A 131 5.71e+01 d.17.4.3 87004 1q8iA 783 5.71e+01 c.55.3.5,e.8.1.1 96208,96209 1kopA 223 5.84e+01 2cba b.74.1.1 27966 1m4iA 181 5.89e+01 d.108.1.1 74457 1wk2A 121 5.99e+01 1fm4A 159 6.02e+01 1bv1 d.129.3.1 76186 2fb7A 95 6.03e+01 1of5A 221 6.06e+01 d.17.4.2 86933 1tmxA 293 6.06e+01 1gk9B 557 6.08e+01 2cw9A 194 6.13e+01 1q8rA 120 6.18e+01 d.79.6.1 96225 2a1vA 144 6.26e+01 1rz1A 161 6.27e+01 b.45.1.2 98124 1gy6A 127 6.29e+01 d.17.4.2 70736 2axoA 270 6.36e+01 1xyiA 66 6.41e+01 1ym5A 300 6.47e+01 1owfB 94 6.51e+01 a.55.1.1 87488 1w9yA 319 6.51e+01 1mp1A 111 6.52e+01 a.188.1.1 91382 1t6cA 315 6.55e+01 c.55.1.8,c.55.1.8 106558,106559 1zyoA 191 6.55e+01 1zw8A 64 6.56e+01 1mw9X 592 6.58e+01 e.10.1.1 91480 1sc3B 88 6.58e+01 1hf2A 210 6.59e+01 1hf2A b.80.3.1,c.102.1.1 60992,60993 1vr4A 103 6.61e+01 1mspA 126 6.63e+01 1mspA b.1.11.2 22333 1yqfA 203 6.66e+01 2a11A 242 6.67e+01 2c8mA 262 6.72e+01 1vzyA 291 6.78e+01 1r77A 103 6.79e+01 2bt9A 90 6.83e+01 2f4pA 147 6.89e+01 1gqeA 365 6.90e+01 e.38.1.1 70351 1on2A 142 6.90e+01 a.4.5.24,a.76.1.1 87103,87104 1n0wB 35 6.91e+01 j.97.1.1 79773 1cz4A 185 6.91e+01 1cz4A b.52.2.3,d.31.1.1 26934,38468 1bxoA 323 6.98e+01 2er7E b.50.1.2 26805 1bdo 80 7.01e+01 1bdo b.84.1.1 28214 1jsdA 319 7.07e+01 b.19.1.2 63258 1u04A 771 7.07e+01 b.34.14.1,c.55.3.10 107539,107540 1i2sA 282 7.08e+01 e.3.1.1 71104 1s5jA 847 7.14e+01 1k77A 260 7.30e+01 c.1.15.5 72096 1k78A 149 7.36e+01 a.4.1.5,a.4.1.5 68255,68256 2glfA 450 7.38e+01 1f5mA 180 7.45e+01 1f5mB d.110.2.1 40895 1v93A 296 7.45e+01 c.1.23.1 100532 1vbiA 344 7.49e+01 1syyA 346 7.52e+01 a.25.1.2 106126 1pprM 312 7.57e+01 1pprM a.131.1.1,a.131.1.1 19502,19503 1k7hA 476 7.66e+01 c.76.1.1 72101 1ko6A 187 7.75e+01 b.119.1.1 77471 1ogaD 215 7.78e+01 b.1.1.1,b.1.1.2 86990,86991 1un3A 123 7.82e+01 d.5.1.1 99646 1lkdA 297 7.90e+01 d.32.1.3,d.32.1.3 78059,78060 1tuoA 464 7.97e+01 1su8A 636 8.06e+01 e.26.1.2 98999 1rjdA 334 8.18e+01 c.66.1.37 97558 1q7lA 198 8.23e+01 c.56.5.4 96044 2ccvA 101 8.44e+01 1djxA 624 8.56e+01 1djxB a.39.1.7,b.7.1.1,c.1.18.1 17342,23159,29587 1rj8A 164 8.84e+01 b.22.1.1 97547 1xpmA 396 8.90e+01 1h6tA 291 8.91e+01 b.1.18.15,c.10.2.1 65686,65687 1xpkC 388 8.92e+01