# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2cyeA 133 6.74e-21 1s5uA 138 2.24e-19 d.38.1.1 98573 1z54A 132 5.05e-19 1yliA 153 7.50e-17 2aliA 158 7.69e-17 2gf6A 135 7.78e-16 1vpmA 169 1.44e-15 1lo7A 141 1.54e-14 d.38.1.1 74144 2essA 248 1.80e-13 2gvhA 288 3.05e-13 2h4uA 145 1.16e-10 1zkiA 133 1.78e-10 1wluA 136 1.86e-10 1j1yA 136 2.66e-10 d.38.1.5 90776 2fs2A 151 9.54e-10 1ixlA 131 1.69e-08 d.38.1.5 90717 1o0iA 138 1.99e-08 d.38.1.5 86532 2b3nA 159 4.18e-07 1vh5A 148 6.13e-07 d.38.1.5 100642 1q4uA 151 8.16e-07 d.38.1.5 95828 1z6bA 154 8.16e-07 1c8uA 285 1.35e-06 1c8uA d.38.1.3,d.38.1.3 38547,38548 1t82A 155 1.88e-06 d.38.1.5 106639 2cwzA 141 2.28e-06 1iq6A 134 1.49e-05 d.38.1.4 76755 1yocA 147 8.40e-05 1sh8A 154 9.01e-05 d.38.1.5 105549 1tbuA 118 7.49e-04 2bi0A 337 5.83e-03 1mkaA 171 2.89e-02 1mkaA d.38.1.2 38543 2bdvA 231 1.03e-01 2bm3A 166 1.91e-01 2bc4A 211 3.27e-01 1zxkA 98 3.45e-01 1yycA 174 3.97e-01 1te5A 257 5.79e-01 d.153.1.1 106795 1pn2A 280 6.35e-01 d.38.1.4,d.38.1.4 94930,94931 1m3sA 186 7.05e-01 c.80.1.3 78573 1f39A 101 7.81e-01 1umuA b.87.1.1 28386 2as0A 396 9.73e-01 1w9hA 427 9.77e-01 1iicA 422 1.84e+00 1nmtA d.108.1.2,d.108.1.2 62422,62423 1j09A 468 1.84e+00 a.97.1.1,c.26.1.1 77025,77026 1wxcB 134 2.22e+00 2f4lA 297 3.83e+00 1dqeA 137 4.41e+00 1dqeA a.39.2.1 17388 1tyjA 170 4.51e+00 1f3mA 80 4.69e+00 1f3mA j.66.1.1 46358 1j1bA 420 4.73e+00 d.144.1.7 90758 1y8qA 346 5.02e+00 2eifA 136 5.22e+00 1bkb b.34.5.2,b.40.4.5 24607,25339 1jyaA 130 5.27e+00 d.198.1.1 67453 1hn0A 1021 5.55e+00 a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2 83616,83617,83618,83619 1jeoA 180 5.68e+00 c.80.1.3 66611 1xgsA 295 5.86e+00 1bn5 a.4.5.25,d.127.1.1 16216,41153 1dnlA 199 6.43e+00 1ci0A b.45.1.1 25753 1kt6A 183 6.55e+00 b.60.1.1 84466 1ww7A 160 7.00e+00 1mbyA 88 7.22e+00 d.223.1.1 78931 1yqfA 203 7.25e+00 2f96A 224 7.51e+00 1n0wB 35 7.69e+00 j.97.1.1 79773 2aalA 131 7.87e+00 1ylxA 103 8.19e+00 1gotB 340 8.25e+00 1tbgA b.69.4.1 27648 1l5aA 436 8.29e+00 c.43.1.2,c.43.1.2 75923,75924 1t6cA 315 8.41e+00 c.55.1.8,c.55.1.8 106558,106559 1g87A 614 8.59e+00 a.102.1.2,b.2.2.2 83275,83276 1l0wA 580 8.80e+00 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1t4wA 196 8.82e+00 b.2.5.2 106427 1nzjA 298 8.88e+00 c.26.1.1 92377 1te2A 226 9.43e+00 c.108.1.6 106792 1ncwH 222 1.04e+01 b.1.1.1,b.1.1.2 85555,85556 1xpkC 388 1.07e+01 1xpmA 396 1.07e+01 1n4xH 120 1.08e+01 b.1.1.1 85324 1pcfA 66 1.11e+01 1pcfA d.18.1.1 38142 1oaqH 121 1.12e+01 b.1.1.1 92707 1fm0D 81 1.14e+01 1fmaD d.15.3.1 37642 1g79A 218 1.14e+01 1ci0A b.45.1.1 25752 1xfrA 128 1.16e+01 2axoA 270 1.16e+01 1wcdJ 441 1.17e+01 1xc3A 302 1.18e+01 1oh0A 131 1.21e+01 d.17.4.3 87004 1vcaA 202 1.28e+01 1vcaA b.1.1.3,b.1.1.4 21649,21685 1xi1A 575 1.29e+01 1vjzA 341 1.30e+01 c.1.8.3 100838 2bdeA 470 1.31e+01 1xl7A 612 1.37e+01 1rl4A 188 1.49e+01 d.167.1.1 97636 1txqA 93 1.54e+01 2as9A 210 1.56e+01 1vavA 222 1.57e+01 b.29.1.18 108472 1kzfA 230 1.58e+01 d.108.1.3 73354 1qxyA 252 1.64e+01 d.127.1.1 96565 2gtqA 867 1.68e+01 1g38A 393 1.70e+01 2admA c.66.1.27 60235 1cz4A 185 1.73e+01 1cz4A b.52.2.3,d.31.1.1 26934,38468 1ox0A 430 1.74e+01 c.95.1.1,c.95.1.1 87495,87496 2f4nA 273 1.75e+01 2bgiA 272 1.75e+01 3fib 249 1.75e+01 3fib d.171.1.1 42455 2bcjB 340 1.78e+01 1w6nA 134 1.80e+01 1i1jA 108 1.82e+01 1i1jA b.34.2.1 61531 1nlbH 218 1.89e+01 b.1.1.1,b.1.1.2 80621,80622 1b8aA 438 1.91e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1esxA 96 1.92e+01 1esxA j.11.1.1 59501 2g1lA 104 1.95e+01 1oo0A 147 1.98e+01 d.232.1.1 87182 1mdc 133 2.01e+01 1hmt b.60.1.2 27198 1iqzA 81 2.08e+01 d.58.1.4 66281 1q8rA 120 2.09e+01 d.79.6.1 96225 1o8vA 134 2.12e+01 b.60.1.2 86680 1tuoA 464 2.15e+01 1w6sA 599 2.16e+01 1gz8A 299 2.17e+01 d.144.1.7 83405 1jmxB 349 2.25e+01 b.69.2.2 66906 1xyiA 66 2.27e+01 1w66A 232 2.28e+01 1syyA 346 2.30e+01 a.25.1.2 106126 2f71A 298 2.31e+01 1vg8A 207 2.32e+01 c.37.1.8 108606 1j05B 121 2.33e+01 b.1.1.1 90736 1q1rA 431 2.39e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1ed8A 449 2.40e+01 1b8jA c.76.1.1 34988 2a8jA 420 2.44e+01 1un3A 123 2.47e+01 d.5.1.1 99646 1hqkA 154 2.47e+01 c.16.1.1 65902 1pa1A 310 2.50e+01 c.45.1.2 94404 1b3aA 67 2.51e+01 1b3aA d.9.1.1 37410 1wdeA 294 2.55e+01 1bb9 115 2.56e+01 1bb9 b.34.2.1 24554 3cox 507 2.58e+01 1b8sA c.3.1.2,d.16.1.1 30332,37863 1yqgA 263 2.58e+01 1ijyA 130 2.59e+01 1ijxA a.141.1.1 62517 1njhA 119 2.60e+01 b.128.1.1 85787 1wkbA 810 2.64e+01 1fm4A 159 2.64e+01 1bv1 d.129.3.1 76186 1hq0A 295 2.67e+01 1hzgA d.194.1.1 61122 1iujA 106 2.69e+01 d.58.4.5 90701 2aboA 136 2.72e+01 1djxA 624 2.75e+01 1djxB a.39.1.7,b.7.1.1,c.1.18.1 17342,23159,29587 1ug3A 339 2.76e+01 1c7sA 858 2.78e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 2fi9A 128 2.79e+01 1xwvA 129 2.82e+01 1yemA 179 2.82e+01 1xniA 118 2.83e+01 2cu3A 64 2.83e+01 1zxfA 155 2.85e+01 1m4iA 181 2.86e+01 d.108.1.1 74457 1jhfA 202 2.87e+01 a.4.5.2,b.87.1.1 63057,63058 1pprM 312 2.88e+01 1pprM a.131.1.1,a.131.1.1 19502,19503 1gl4A 285 2.88e+01 d.22.1.2,g.3.11.5 65286,65287 2azpA 318 2.92e+01 1q7lA 198 2.98e+01 c.56.5.4 96044 1o6vA 466 2.99e+01 b.1.18.15,c.10.2.1 81099,81100 1s98A 107 3.06e+01 b.124.1.1 105377 1sfdA 105 3.06e+01 b.6.1.1 105480 1qazA 351 3.07e+01 1qazA a.102.3.1 18848 1edqA 540 3.08e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1tqyB 415 3.10e+01 c.95.1.1,c.95.1.1 107247,107248 1n0wA 243 3.11e+01 c.37.1.11 79772 1v93A 296 3.14e+01 c.1.23.1 100532 1tuaA 191 3.14e+01 d.51.1.1,d.51.1.1 107321,107322 1s68A 249 3.19e+01 d.142.2.4 98591 1k78A 149 3.21e+01 a.4.1.5,a.4.1.5 68255,68256 1ga6A 372 3.26e+01 1ga1A c.41.1.2 32556 1u04A 771 3.31e+01 b.34.14.1,c.55.3.10 107539,107540 1lshA 1056 3.37e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1zvnA 99 3.40e+01 1m3yA 413 3.47e+01 b.121.2.3,b.121.2.3 78579,78580 1i31A 314 3.51e+01 1bw8A b.2.7.1 22481 1id2A 106 3.56e+01 1aac b.6.1.1 62288 1wmhA 89 3.59e+01 2ccvA 101 3.59e+01 1g5hA 454 3.59e+01 1g5hA c.51.1.1,d.104.1.1 60270,60271 1g7nA 131 3.61e+01 b.60.1.2 83274 1iynA 295 3.61e+01 a.93.1.1 90722 1f35A 162 3.62e+01 1f35A b.94.1.1 59628 1ve1A 304 3.63e+01 1k32A 1045 3.70e+01 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1noa 113 3.71e+01 2mcm b.1.7.1 22208 1xkpC 143 3.73e+01 1tc5A 194 3.78e+01 c.110.1.1 106752 1ze3D 125 3.81e+01 1wx1A 335 3.84e+01 1nnwA 252 3.88e+01 d.159.1.5 80674 1xhnA 184 3.94e+01 1r9wA 145 4.07e+01 d.89.1.2 97264 1a78A 134 4.11e+01 1c1lA b.29.1.3 24212 1vzyA 291 4.16e+01 1umgA 362 4.16e+01 d.280.1.1 107956 2df7A 458 4.16e+01 1ztuA 341 4.19e+01 2fpeA 62 4.22e+01 1qznA 173 4.23e+01 b.2.2.2 104669 1z7lA 276 4.24e+01 1x8qA 184 4.27e+01 1nxuA 333 4.28e+01 c.122.1.1 86389 1l1sA 113 4.30e+01 c.114.1.1 73484 1pfo 500 4.31e+01 1pfo f.9.1.1 43826 1sra 151 4.32e+01 1sra a.39.1.3 17190 2hgsA 474 4.33e+01 2hgsA c.30.1.4,d.142.1.6 31722,75997 1qy1A 174 4.37e+01 b.60.1.1 96568 1s5jA 847 4.37e+01 2f60K 64 4.43e+01 1qksA 567 4.49e+01 1qksA a.3.1.2,b.70.2.1 15951,27710 1xx6A 191 4.52e+01 2a38A 194 4.54e+01 1tlyA 278 4.57e+01 f.4.6.1 107143 1xh3A 276 4.58e+01 1le6A 123 4.62e+01 a.133.1.2 73862 1sur 215 4.63e+01 1sur c.26.2.2 31620 1yfsA 465 4.63e+01 1on2A 142 4.66e+01 a.4.5.24,a.76.1.1 87103,87104 1wdyA 285 4.66e+01 1gy6A 127 4.70e+01 d.17.4.2 70736 2h3jA 75 4.74e+01 1fm0E 150 4.76e+01 1fmaE d.41.5.1 38629 1j5wA 298 4.84e+01 d.104.1.1 71589 1p4uA 153 4.85e+01 b.1.10.2 87780 1bxoA 323 4.85e+01 2er7E b.50.1.2 26805 1zv9A 172 4.86e+01 1vdmA 153 4.90e+01 1aohA 147 4.92e+01 1aohA b.2.2.2 22401 1zowA 313 4.93e+01 1zboA 210 4.95e+01 1m1lA 236 4.97e+01 d.260.1.1 91166 2fimA 276 4.97e+01 2g8oA 264 4.98e+01 1zhxA 438 5.05e+01 1qqqA 264 5.07e+01 1bkpA d.117.1.1 40931 1uscA 178 5.10e+01 b.45.1.2 99860 1rz1A 161 5.11e+01 b.45.1.2 98124 1v04A 355 5.13e+01 b.68.6.2 100240 1nnxA 109 5.25e+01 b.40.10.1 92013 1w99A 558 5.25e+01 1bs0A 384 5.27e+01 1bs0A c.67.1.4 34490 2g8mA 264 5.28e+01 1qusA 322 5.35e+01 1ltm d.2.1.6 36991 1fqtA 112 5.35e+01 1fqtA b.33.1.1 24441 1kxoA 184 5.42e+01 b.60.1.1 84475 1ka8A 100 5.43e+01 a.4.5.20 72241 1ccwB 483 5.44e+01 1cb7B c.1.19.2 29646 1mvuB 121 5.46e+01 b.1.1.1 91475 2gfaA 119 5.48e+01 1wmmA 145 5.51e+01 1f89A 291 5.56e+01 d.160.1.1 64988 1ns5A 155 5.57e+01 c.116.1.3 80705 1ikoP 178 5.58e+01 b.6.1.5 71243 2mcm 112 5.60e+01 2mcm b.1.7.1 22207 1bwwA 109 5.67e+01 8fabA b.1.1.1 20518 1zndA 174 5.67e+01 1gqeA 365 5.70e+01 e.38.1.1 70351 1jmtA 104 5.72e+01 d.58.7.3 63180 1ec7A 446 5.75e+01 1bqg c.1.11.2,d.54.1.1 29218,38862 1exrA 148 5.76e+01 1cll a.39.1.5 17299 1fgyA 127 5.76e+01 1faoA b.55.1.1 26976 1zz1A 369 5.77e+01 2cw9A 194 5.79e+01 1rcqA 357 5.80e+01 b.49.2.2,c.1.6.1 104882,104883 1z52A 470 5.80e+01 1oruA 195 5.81e+01 b.58.1.2 93464 1ois 223 5.86e+01 1a36A e.15.1.1 43267 1a2yA 107 5.88e+01 8fabA b.1.1.1 19926 1gnxA 479 5.89e+01 c.1.8.4 76241 1yewA 382 5.89e+01 1jae 471 5.91e+01 1smd b.71.1.1,c.1.8.1 27773,28760 1vh4A 435 5.99e+01 b.80.6.1 100640 1yq2A 1024 6.02e+01 2fdiA 211 6.02e+01 1zupA 315 6.06e+01 1zxmA 400 6.06e+01 1dszA 86 6.06e+01 2nllB g.39.1.2 45129 1mkmA 249 6.11e+01 a.4.5.33,d.110.2.2 79242,79243 2f7tA 227 6.11e+01 1k77A 260 6.17e+01 c.1.15.5 72096 1mqkL 120 6.18e+01 b.1.1.1 85054 1vr5A 547 6.20e+01 1pmnA 364 6.22e+01 d.144.1.7 94907 1hnjA 317 6.24e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 2fwmX 250 6.26e+01 1h6uA 308 6.32e+01 b.1.18.15,c.10.2.1 65688,65689 1h2eA 207 6.36e+01 c.60.1.1 70857 1uj6A 227 6.37e+01 c.124.1.4,d.58.40.1 107898,107899 1ut9A 609 6.40e+01 a.102.1.2,b.1.18.2 99912,99913 1of5A 221 6.41e+01 d.17.4.2 86933 2bcfA 276 6.43e+01 1i1rB 181 6.46e+01 1i1rB a.26.1.1 61548 1d4oA 184 6.52e+01 1d4oA c.31.1.4 31748 3pcgM 238 6.56e+01 3pchM b.3.6.1 22742 2cygA 312 6.57e+01 1xubA 298 6.61e+01 1gsoA 431 6.63e+01 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1c30B 382 6.63e+01 c.8.3.1,c.23.16.1 30736,31413 1jkoC 52 6.65e+01 a.4.1.2 66809 1zw8A 64 6.66e+01 1mp1A 111 6.68e+01 a.188.1.1 91382 1kr4A 125 6.68e+01 d.58.5.2 72889 1lrzA 426 6.68e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1wk2A 121 6.71e+01 1a7tA 232 6.72e+01 1a7tA d.157.1.1 42041 1o2dA 371 6.73e+01 e.22.1.2 86591 1sc3B 88 6.76e+01 1wucA 250 6.77e+01 1deuA 277 6.81e+01 1theB d.3.1.1 37085 1oeyJ 107 6.82e+01 d.15.2.2 92804 1gk9B 557 6.85e+01 2h03A 291 6.85e+01 1q3iA 214 6.91e+01 d.220.1.1 104524 2brcA 214 6.92e+01 1ci9A 392 7.01e+01 e.3.1.1 64767 1i2sA 282 7.14e+01 e.3.1.1 71104 2d2eA 250 7.15e+01 1u7kA 131 7.19e+01 1hr0W 71 7.20e+01 1ah9 b.40.4.5 25329 1ymiA 334 7.25e+01 1qg7A 67 7.33e+01 1a15A d.9.1.1 37449 2giyA 191 7.34e+01 1a6m 151 7.34e+01 1a6m a.1.1.2 15018 1xeoA 168 7.34e+01 1vjqA 79 7.35e+01 k.43.1.1 100830 1kshB 152 7.42e+01 b.1.18.8 72915 1js3A 486 7.44e+01 c.67.1.6 67215 1a9xB 379 7.49e+01 1c3oB c.8.3.1,c.23.16.1 30732,31409 1tuhA 156 7.49e+01 d.17.4.11 107345 1erjA 393 7.50e+01 1erjA b.69.4.1 27660 2a90A 240 7.54e+01 1t8kA 77 7.55e+01 a.28.1.1 106666 2ghcX 261 7.57e+01 1sx5A 244 7.60e+01 c.52.1.2 99023 1llp 343 7.63e+01 1arv a.93.1.1 18578 1eg5A 384 7.67e+01 1ecxA c.67.1.3 34429 1j5sA 463 7.68e+01 c.1.9.8 71580 1dpjA 329 7.81e+01 1smrA b.50.1.2 26828 1lkkA 105 7.83e+01 1lckA d.93.1.1 40412 1mpp 361 7.84e+01 2rmpA b.50.1.2 26856 1t3tA 1303 7.89e+01 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 1oafA 261 7.90e+01 a.93.1.1 86734 1e25A 282 7.93e+01 1e25A e.3.1.1 42731 1j6qA 136 7.94e+01 b.40.9.1 77091 1m93C 41 8.05e+01 1okcA 297 8.17e+01 f.42.1.1 93248 2bsjA 133 8.18e+01 1u69A 163 8.31e+01 d.32.1.7 107699 1js1X 324 8.32e+01 c.78.1.1,c.78.1.1 71834,71835 2blfA 373 8.33e+01 1j6oA 268 8.38e+01 c.1.9.12 77088 1hw7A 255 8.42e+01 1i7fA d.193.1.1 61297 2bsfA 176 8.52e+01 1jb7B 260 8.53e+01 1otcB b.40.4.3 62839 1u6zA 513 8.55e+01 2bt9A 90 8.57e+01 1xfsA 178 8.57e+01 d.129.3.5 109589 1qftA 175 8.57e+01 1qftA b.60.1.1 27151 1vqoX 92 8.64e+01 1oq1A 223 8.66e+01 b.29.1.17 93408 1ohpA 125 8.68e+01 1nszA 347 8.72e+01 b.30.5.4 80724 1xf1A 926 8.72e+01 1m3qA 317 8.75e+01 a.96.1.3,d.129.1.2 91184,91185 1s8iA 121 8.78e+01 a.133.1.2 98735 1psrA 100 8.80e+01 1psrA a.39.1.2 17180 2dexX 671 8.82e+01 1b65A 375 8.89e+01 1b65A d.154.1.1 42020 2d7nA 93 8.91e+01