# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2cyeA 133 3.59e-17 2av9A 147 1.23e-16 1s5uA 138 7.80e-16 d.38.1.1 98573 1z54A 132 9.41e-16 1njkA 156 2.87e-15 d.38.1.1 85818 2aliA 158 1.05e-14 2gf6A 135 2.31e-13 1yliA 153 2.35e-13 1vpmA 169 9.30e-13 1bvqA 141 7.63e-12 1bvqA d.38.1.1 38542 1lo7A 141 8.24e-12 d.38.1.1 74144 2essA 248 5.95e-11 2gvhA 288 1.74e-09 2h4uA 145 3.29e-09 1wluA 136 5.34e-08 1j1yA 136 9.01e-08 d.38.1.5 90776 1zkiA 133 1.26e-07 1u1zA 168 1.50e-07 d.38.1.6 107602 2fs2A 151 2.06e-07 1psuA 140 5.73e-07 d.38.1.5 88285 1o0iA 138 1.72e-06 d.38.1.5 86532 2b6eA 146 2.59e-06 1ixlA 131 2.94e-06 d.38.1.5 90717 1z6bA 154 1.55e-05 1q4uA 151 1.87e-05 d.38.1.5 95828 2b3nA 159 2.81e-05 2cwzA 141 3.28e-05 1vh5A 148 4.46e-05 d.38.1.5 100642 1c8uA 285 8.37e-05 1c8uA d.38.1.3,d.38.1.3 38547,38548 1t82A 155 2.44e-04 d.38.1.5 106639 1sh8A 154 2.61e-04 d.38.1.5 105549 1yocA 147 3.25e-04 1iq6A 134 6.70e-04 d.38.1.4 76755 2bi0A 337 5.07e-02 1tbuA 118 8.38e-02 1mkaA 171 7.87e-01 1mkaA d.38.1.2 38543 2b59A 187 1.03e+00 2bm3A 166 1.10e+00 2bc4A 211 1.32e+00 1txqA 93 1.71e+00 2bdvA 231 1.84e+00 1kzfA 230 3.09e+00 d.108.1.3 73354 1pn2A 280 3.11e+00 d.38.1.4,d.38.1.4 94930,94931 1g79A 218 4.13e+00 1ci0A b.45.1.1 25752 1te5A 257 4.69e+00 d.153.1.1 106795 1yycA 174 4.86e+00 1k32A 1045 5.32e+00 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1gln 468 5.51e+00 1gln a.97.1.1,c.26.1.1 18752,31588 1dnlA 199 6.28e+00 1ci0A b.45.1.1 25753 1mbyA 88 7.54e+00 d.223.1.1 78931 1tf4A 605 8.37e+00 1tf4A a.102.1.2,b.2.2.2 18827,22393 1zxkA 98 8.65e+00 1jhfA 202 8.77e+00 a.4.5.2,b.87.1.1 63057,63058 3fib 249 9.76e+00 3fib d.171.1.1 42455 2eifA 136 1.10e+01 1bkb b.34.5.2,b.40.4.5 24607,25339 1oglA 283 1.14e+01 a.204.1.1 92922 1gz8A 299 1.18e+01 d.144.1.7 83405 1jyaA 130 1.18e+01 d.198.1.1 67453 1pkp 150 1.21e+01 1pkp d.14.1.1,d.50.1.2 37551,38787 1xi1A 575 1.25e+01 2fibA 269 1.26e+01 3fib d.171.1.1 42457 2f4lA 297 1.28e+01 1esxA 96 1.32e+01 1esxA j.11.1.1 59501 1j1bA 420 1.32e+01 d.144.1.7 90758 1mq8A 291 1.34e+01 b.1.1.3,b.1.1.4 79405,79406 1tyjA 170 1.37e+01 2cw9A 194 1.38e+01 1ww7A 160 1.43e+01 1iicA 422 1.52e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 1zt1A 277 1.53e+01 1y6hA 177 1.56e+01 1y8qA 346 1.58e+01 1xc3A 302 1.64e+01 1j09A 468 1.67e+01 a.97.1.1,c.26.1.1 77025,77026 2cu3A 64 1.69e+01 1xeuA 263 1.72e+01 1hn0A 1021 1.74e+01 a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2 83616,83617,83618,83619 1noa 113 1.77e+01 2mcm b.1.7.1 22208 1m3sA 186 1.80e+01 c.80.1.3 78573 2as0A 396 1.81e+01 2brcA 214 1.96e+01 1w3fA 315 2.04e+01 1q8rA 120 2.09e+01 d.79.6.1 96225 1zxfA 155 2.11e+01 1g87A 614 2.13e+01 a.102.1.2,b.2.2.2 83275,83276 1g72A 573 2.14e+01 4aahA b.70.1.1 27680 1zhxA 438 2.14e+01 2bcjB 340 2.15e+01 1nb5I 98 2.17e+01 d.17.1.2 80381 1w66A 232 2.17e+01 1jeoA 180 2.17e+01 c.80.1.3 66611 1ylxA 103 2.19e+01 1f39A 101 2.20e+01 1umuA b.87.1.1 28386 1j5wA 298 2.21e+01 d.104.1.1 71589 1kt6A 183 2.31e+01 b.60.1.1 84466 1zt7A 276 2.33e+01 1yewA 382 2.41e+01 3pmgA 561 2.51e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1dqeA 137 2.59e+01 1dqeA a.39.2.1 17388 1hbq 183 2.65e+01 1aqb b.60.1.1 27078 1tvzA 388 2.67e+01 c.95.1.2,c.95.1.2 107367,107368 1gqeA 365 2.74e+01 e.38.1.1 70351 1zo2A 129 2.77e+01 1hr0W 71 2.78e+01 1ah9 b.40.4.5 25329 1vjzA 341 2.79e+01 c.1.8.3 100838 1aym3 238 2.79e+01 1aym3 1hdmA 201 2.86e+01 1iakA b.1.1.2,d.19.1.1 21583,38157 1xjvA 294 2.87e+01 1vprA 374 2.87e+01 1xpkC 388 2.89e+01 1xpmA 396 2.90e+01 1zzcA 198 2.90e+01 1ah6 220 2.92e+01 1yer d.122.1.1 41094 1n0wB 35 2.97e+01 j.97.1.1 79773 1wznA 252 3.16e+01 1n67A 359 3.16e+01 b.2.3.4,b.2.3.4 85354,85355 2mcm 112 3.20e+01 2mcm b.1.7.1 22207 1wcdJ 441 3.21e+01 1qqcA 773 3.27e+01 1tgoA c.55.3.5,e.8.1.1 33724,43013 1gotB 340 3.36e+01 1tbgA b.69.4.1 27648 1w9hA 427 3.36e+01 1nzjA 298 3.45e+01 c.26.1.1 92377 1hcl 298 3.48e+01 1hcl d.144.1.7 41593 1opy 131 3.51e+01 1opy d.17.4.3 38113 1ga6A 372 3.64e+01 1ga1A c.41.1.2 32556 2h3jA 75 3.65e+01 1div 149 3.71e+01 1div d.99.1.1,d.100.1.1 40692,40693 1dmmA 131 3.75e+01 1opy d.17.4.3 38114 1j05B 121 3.85e+01 b.1.1.1 90736 1vcaA 202 3.86e+01 1vcaA b.1.1.3,b.1.1.4 21649,21685 1a6wH 120 3.90e+01 1mfa b.1.1.1 20253 1vrmA 325 3.94e+01 1wxcB 134 4.03e+01 1l0wA 580 4.06e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 2d0oA 610 4.11e+01 1r9wA 145 4.12e+01 d.89.1.2 97264 1ttuA 477 4.12e+01 b.1.18.1,b.2.5.8,b.42.7.1 107305,107306,107307 1vdmA 153 4.13e+01 2fi9A 128 4.17e+01 1umvX 122 4.17e+01 a.133.1.2 99630 1mdc 133 4.17e+01 1hmt b.60.1.2 27198 1aqb 183 4.31e+01 1aqb b.60.1.1 27084 1riqA 465 4.37e+01 a.203.1.1,d.104.1.1 97516,97517 1zlbA 122 4.37e+01 1oaqH 121 4.41e+01 b.1.1.1 92707 1iqzA 81 4.44e+01 d.58.1.4 66281 1ktjA 129 4.67e+01 b.1.18.7 72974 1s68A 249 4.72e+01 d.142.2.4 98591 1xfjA 261 4.78e+01 d.194.1.2 109585 1ec7A 446 4.78e+01 1bqg c.1.11.2,d.54.1.1 29218,38862 1eg5A 384 4.85e+01 1ecxA c.67.1.3 34429 1vavA 222 4.86e+01 b.29.1.18 108472 1le6A 123 4.86e+01 a.133.1.2 73862 2aboA 136 4.95e+01 1j6oA 268 4.97e+01 c.1.9.12 77088 2df7A 458 4.98e+01 1qg7A 67 5.00e+01 1a15A d.9.1.1 37449 2f96A 224 5.19e+01 1wdeA 294 5.25e+01 1te2A 226 5.25e+01 c.108.1.6 106792 1js3A 486 5.26e+01 c.67.1.6 67215 1sa3A 262 5.29e+01 c.52.1.23 105400 1f5mA 180 5.31e+01 1f5mB d.110.2.1 40895 1xfrA 128 5.37e+01 1djxB 624 5.45e+01 1djxB a.39.1.7,b.7.1.1,c.1.18.1 17343,23160,29588 1w6sA 599 5.46e+01 1tqyB 415 5.48e+01 c.95.1.1,c.95.1.1 107247,107248 1cwvA 492 5.54e+01 1cwvA b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3 22373,22374,22375,22376,42442 1fzoA 274 5.64e+01 1agdA b.1.1.2,d.19.1.1 60155,60156 1p3wA 404 5.66e+01 c.67.1.3 87752 1xxsA 122 5.68e+01 1ytaA 180 5.73e+01 2fpnA 216 5.78e+01 2b06A 155 5.86e+01 1tc5A 194 5.92e+01 c.110.1.1 106752 1dpjA 329 5.94e+01 1smrA b.50.1.2 26828 1ci9A 392 5.96e+01 e.3.1.1 64767 1hqkA 154 5.98e+01 c.16.1.1 65902 2aalA 131 5.99e+01 1m3yA 413 6.00e+01 b.121.2.3,b.121.2.3 78579,78580 1oh0A 131 6.04e+01 d.17.4.3 87004 2a8jA 420 6.10e+01 1fm0D 81 6.10e+01 1fmaD d.15.3.1 37642 1erjA 393 6.12e+01 1erjA b.69.4.1 27660 1atiA 505 6.13e+01 1atiA c.51.1.1,d.104.1.1 33196,40745 1t6cA 315 6.13e+01 c.55.1.8,c.55.1.8 106558,106559 1z9fA 153 6.14e+01 1zboA 210 6.15e+01 2fpeA 62 6.34e+01 1nnwA 252 6.41e+01 d.159.1.5 80674 1exrA 148 6.44e+01 1cll a.39.1.5 17299 1sra 151 6.50e+01 1sra a.39.1.3 17190 1i1jA 108 6.50e+01 1i1jA b.34.2.1 61531 1wmmA 145 6.52e+01 1z7aA 308 6.54e+01 1g2aA 168 6.54e+01 d.167.1.1 65109 1nbwA 607 6.55e+01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1okcA 297 6.59e+01 f.42.1.1 93248 1l0iA 78 6.59e+01 a.28.1.1 77643 2a8lA 420 6.64e+01 1lshA 1056 6.70e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1txkA 498 6.71e+01 b.1.18.2,b.30.5.9 107425,107426 1wk2A 121 6.73e+01 1wguA 136 6.78e+01 2c8mA 262 6.88e+01 1vz6A 393 6.89e+01 d.154.1.2 108949 1gd0A 122 6.91e+01 1dptA d.80.1.3 39834 2f71A 298 6.99e+01 1pcfA 66 7.01e+01 1pcfA d.18.1.1 38142 2aynA 404 7.07e+01 1ug3A 339 7.09e+01 1ni5A 433 7.10e+01 c.26.2.5,d.229.1.1 80533,80534 1zw8A 64 7.11e+01 1o6vA 466 7.23e+01 b.1.18.15,c.10.2.1 81099,81100 1rl4A 188 7.23e+01 d.167.1.1 97636 2as9A 210 7.33e+01 1v93A 296 7.34e+01 c.1.23.1 100532 1ka8A 100 7.35e+01 a.4.5.20 72241 1lid 131 7.44e+01 1hmt b.60.1.2 27184 1pvc2 271 7.51e+01 1aym2 1vzyA 291 7.57e+01 1qusA 322 7.58e+01 1ltm d.2.1.6 36991 1uxzA 131 7.63e+01 b.18.1.10 100170 1rz1A 161 7.63e+01 b.45.1.2 98124 1t4wA 196 7.70e+01 b.2.5.2 106427 1ckaA 57 7.71e+01 1ckaA b.34.2.1 24459 1sltA 134 7.74e+01 1c1lA b.29.1.3 24186 2g1lA 104 7.78e+01 1h6uA 308 7.87e+01 b.1.18.15,c.10.2.1 65688,65689 2bnmA 198 7.98e+01 1zyoA 191 8.03e+01 1p1cA 199 8.06e+01 c.66.1.16 87669 2a6zA 222 8.15e+01 1nnxA 109 8.16e+01 b.40.10.1 92013 2gtqA 867 8.19e+01 1sqzA 121 8.20e+01 a.133.1.2 98975 1tj9A 121 8.20e+01 a.133.1.2 107015 1tk4A 121 8.20e+01 a.133.1.2 107073 1zwpA 121 8.20e+01 2g58A 121 8.20e+01 1u7kA 131 8.28e+01 1i2sA 282 8.32e+01 e.3.1.1 71104 3cox 507 8.47e+01 1b8sA c.3.1.2,d.16.1.1 30332,37863 1rwhA 757 8.48e+01 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1ebdC 41 8.51e+01 1ebdC a.9.1.1 16355 2hgsA 474 8.51e+01 2hgsA c.30.1.4,d.142.1.6 31722,75997 1cmbA 104 8.54e+01 1cmbA a.43.1.5 17460 1mw9X 592 8.56e+01 e.10.1.1 91480 1w6nA 134 8.60e+01 1v3yA 192 8.63e+01 2a6pA 208 8.68e+01 1bkpA 278 8.69e+01 1bkpA d.117.1.1 41029 1fo0A 116 8.70e+01 1tvdA b.1.1.1 20610 1h2eA 207 8.72e+01 c.60.1.1 70857 1zl8A 53 8.72e+01 1xx6A 191 8.80e+01 2pil 159 8.84e+01 2pil d.24.1.1 38376 1or0B 528 8.87e+01 1tqyA 424 8.87e+01 c.95.1.1,c.95.1.1 107245,107246 1jzuA 157 8.90e+01 b.60.1.1 84271 2ccvA 101 8.90e+01 1k78A 149 8.91e+01 a.4.1.5,a.4.1.5 68255,68256 1tuaA 191 8.92e+01 d.51.1.1,d.51.1.1 107321,107322 1bs0A 384 8.95e+01 1bs0A c.67.1.4 34490