# List of top-scoring protein chains for t2k-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1s72B 338 6.66e-01 b.43.3.2 105320 1f45B 197 7.99e-01 1f45B a.26.1.1 59642 1ll2A 333 8.74e-01 c.68.1.14 74005 1jj2B 337 9.91e-01 1ffkB b.43.3.2 63086 1htjF 210 1.03e+00 1htjF a.91.1.1 61254 1ffkB 338 1.16e+00 1ffkB b.43.3.2 25719 1w33A 181 1.86e+00 1xteA 154 1.99e+00 1vqoB 338 2.09e+00 1w7jA 795 2.14e+00 2br9A 234 3.17e+00 1b5eA 246 3.52e+00 1b5eA d.117.1.1 41056 1oe9A 795 4.43e+00 b.34.3.1,c.37.1.9 92792,92793 2ahqA 76 4.62e+00 1jnyA 435 5.49e+00 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1w5fA 353 5.49e+00 1q8fA 313 6.72e+00 c.70.1.1 96203 1gw5B 591 7.46e+00 a.118.1.10 70630 1io7A 368 7.67e+00 1f4tA a.104.1.1 18971 1f4kA 122 8.47e+00 1bm9A a.4.5.7 59646 1j4aA 333 9.59e+00 c.2.1.4,c.23.12.1 71502,71503 1c02A 166 9.62e+00 1qspA a.24.10.2 16633 1jbgA 109 9.76e+00 a.6.1.3 66480 1pnbB 75 9.97e+00 1pnbB 1f4tA 368 1.00e+01 1f4tA a.104.1.1 18973 1xtnA 120 1.04e+01 2bvfA 459 1.06e+01 1tiyA 164 1.07e+01 c.97.1.2 107012 1avoB 140 1.09e+01 1avoB 1gg1A 350 1.10e+01 1qr7A c.1.10.4 29187 1qspA 165 1.15e+01 1qspA a.24.10.2 16639 1qoyA 318 1.17e+01 1qoyA h.4.4.1 45788 1aba 87 1.20e+01 1aba c.47.1.1 32760 1gk4D 84 1.39e+01 h.1.20.1 70206 1nx8A 273 1.39e+01 b.82.2.8 86374 2g3kA 94 1.40e+01 1qr7A 350 1.52e+01 1qr7A c.1.10.4 29191 1gk4A 84 1.53e+01 h.1.20.1 70203 1ll0A 339 1.61e+01 c.68.1.14 73995 1gk4C 84 1.66e+01 h.1.20.1 70205 1g5gB 481 1.75e+01 f.12.1.1,h.3.2.1 65157,65158 1ik7A 108 1.84e+01 a.77.1.2 71241 1aazA 87 1.90e+01 1aba c.47.1.1 32761 1m56D 51 1.98e+01 f.23.8.1 74475 1k92A 455 1.98e+01 c.26.2.1,d.210.1.1 68325,68326 1huxA 270 1.99e+01 1huxA c.55.1.5 61278 1wjgA 137 2.04e+01 2etsA 128 2.09e+01 1qbqA 333 2.19e+01 1ft1A a.118.6.1 19187 1k6zA 141 2.20e+01 d.198.1.1 68247 1cktA 71 2.22e+01 1cktA a.21.1.1 16417 1fs7A 485 2.32e+01 1qdbA a.138.1.3 19691 1rj1A 151 2.34e+01 a.29.6.1 97526 1t3wA 148 2.40e+01 1bjwA 382 2.60e+01 1bjwA c.67.1.1 34349 1wkqA 164 2.64e+01 c.97.1.2 109393 1sfjA 238 2.70e+01 1b5pA 385 2.75e+01 c.67.1.1 90403 1liaA 164 2.75e+01 1cpcA a.1.1.3 15661 1jcrA 377 2.97e+01 a.118.6.1 66506 1g5gA 481 2.99e+01 f.12.1.1,h.3.2.1 65155,65156 1yt3A 375 2.99e+01 1w2wA 211 3.04e+01 c.124.1.5 109130 1d0yA 761 3.05e+01 1lvk b.34.3.1,c.37.1.9 24581,32178 1aab 83 3.06e+01 1cktA a.21.1.1 16420 2aq8A 269 3.07e+01 1kmdA 117 3.08e+01 d.189.1.1 72744 2dldA 337 3.18e+01 1dxy c.2.1.4,c.23.12.1 30099,31359 1l2qA 458 3.25e+01 c.1.25.1 73510 1lmb3 92 3.34e+01 1lmb3 1d8dA 377 3.40e+01 1ft1A a.118.6.1 19185 1dowA 205 3.44e+01 1dovA a.24.9.1 16626 1su0B 159 3.46e+01 d.224.1.2 106015 1zs3A 182 3.53e+01 2a8kA 108 3.75e+01 1dk5A 322 3.77e+01 1dk5A a.65.1.1 18192 1nthA 458 3.79e+01 c.1.25.1 80730 1s5lX 50 3.87e+01 1mnmA 100 3.91e+01 1mnmA d.88.1.1 40232 1s72M 194 3.93e+01 d.12.1.2 105332 1q8bA 105 4.00e+01 d.58.4.6 96201 1e6iA 121 4.07e+01 1b91A a.29.2.1 16969 1vqoM 195 4.08e+01 1ej2A 181 4.24e+01 1f9aA c.26.1.3 59414 1sflA 238 4.28e+01 2gsfA 373 4.32e+01 1jyaA 130 4.33e+01 d.198.1.1 67453 1b8dA 164 4.34e+01 1cpcA a.1.1.3 15665 1w2qA 127 4.36e+01 1ywmA 200 4.40e+01 1ft1A 377 4.65e+01 1ft1A a.118.6.1 19186 1v71A 323 4.67e+01 2ba2A 85 4.76e+01 1h6kX 97 4.78e+01 d.58.7.1 60684 1jsxA 207 4.81e+01 c.66.1.20 71846 1px5A 349 4.82e+01 a.160.1.2,d.218.1.6 95277,95278 2b3hA 329 4.92e+01 2cdqA 510 5.06e+01 1qhlA 227 5.07e+01 1qhlA c.37.1.12 32382 1vf6C 72 5.15e+01 a.194.1.1 100602 1jcqA 382 5.19e+01 a.118.6.1 66504 1xizA 159 5.28e+01 1mh3A 421 5.41e+01 a.4.1.1,c.94.1.1 79112,79113 1f5nA 592 5.49e+01 1dg3A a.114.1.1,c.37.1.8 19077,32152 1ld8A 382 5.76e+01 a.118.6.1 73838 1rw1A 114 5.80e+01 1tn6A 382 5.81e+01 1dpe 507 5.82e+01 1dpe c.94.1.1 35799 2cj4A 150 5.83e+01 2hrvA 142 5.83e+01 2hrvA b.47.1.4 26429 2ab5A 269 5.84e+01 2ex0A 399 5.90e+01 1z4hA 66 5.90e+01 1cxzB 86 6.09e+01 1cxzB a.2.6.1 15705 1bm9A 122 6.12e+01 1bm9A a.4.5.7 16116 2pna 104 6.13e+01 1qadA d.93.1.1 40501 1wkbA 810 6.20e+01 1au1A 166 6.24e+01 1ifa a.26.1.3 16889 1kf6B 243 6.32e+01 a.1.2.1,d.15.4.2 72397,72398 1ej5A 107 6.33e+01 1ej5A a.68.1.1 18268 1flcB 175 6.34e+01 1flcB h.3.1.1 45716 1wn0A 145 6.36e+01 2akaA 776 6.42e+01 1dkiA 371 6.47e+01 1dkiA d.3.1.1 37090 1hybA 181 6.53e+01 1f9aA c.26.1.3 61399 1owqA 361 6.75e+01 c.1.8.5,d.26.3.1 104041,104042 1n8fA 350 6.90e+01 c.1.10.4 85397 1jy2O 56 7.03e+01 h.1.8.1 67441 1fvnA 37 7.03e+01 1fvnA j.6.1.1 46096 1de4C 640 7.06e+01 1cx8B a.48.2.1,c.8.4.1,c.56.5.5 17779,30760,33848 1uc7A 125 7.17e+01 c.47.1.1 99163 1s3cA 141 7.60e+01 5gcnA 166 7.66e+01 1yghA d.108.1.1 40807 1b9mA 265 7.68e+01 1b9mA a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1ry6A 360 7.73e+01 c.37.1.9 98090 1tllA 688 7.73e+01 b.43.4.1,c.23.5.2,c.25.1.4 107128,107129,107130 1zx0A 236 7.85e+01 1irqA 71 7.86e+01 a.43.1.4 66297 1chmA 401 7.96e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 1wcuA 153 7.97e+01 2ohxA 374 8.06e+01 2ohxA b.35.1.2,c.2.1.1 24669,29685 2ifo 46 8.10e+01 2ifo h.1.4.1 45567 1gcb 454 8.17e+01 3gcb d.3.1.1 37034 1xsvA 113 8.24e+01 1j9bA 141 8.25e+01 c.47.1.12 66459 1l3aA 228 8.25e+01 d.18.1.2 73531 1a6aB 187 8.26e+01 1iakB b.1.1.2,d.19.1.1 21616,38190 2b1eA 564 8.38e+01 1qy6A 274 8.39e+01 b.47.1.1 96574 1jwgA 147 8.41e+01 a.118.9.2 71911 1ifm 46 8.49e+01 1ql1A h.1.4.1 45557 1tf0B 53 8.49e+01 a.8.1.2 106825 1heuA 374 8.54e+01 2ohxA b.35.1.2,c.2.1.1 60979,60980 1eia 207 8.63e+01 1eia a.28.3.1,a.73.1.1 16951,18331 2fhzB 108 8.67e+01 1faeA 629 8.69e+01 1fce a.102.1.2 18837 1axgA 374 8.71e+01 2ohxA b.35.1.2,c.2.1.1 24691,29707 1onrA 316 8.73e+01 1onrA c.1.10.1 29169 1qdbA 473 8.74e+01 1qdbA a.138.1.3 19688 1iugA 352 8.82e+01 c.67.1.3 90699 1i2oA 316 8.82e+01 1onrA c.1.10.1 61574 1w9gA 104 8.89e+01 2bm8A 236 8.98e+01