# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1f45B 197 8.53e-01 1f45B a.26.1.1 59642 3gcb 470 8.56e-01 3gcb d.3.1.1 37032 1b3uA 588 8.58e-01 1b3uA a.118.1.2 19135 2fbnA 198 1.12e+00 2grrB 170 1.19e+00 1oxjA 173 1.32e+00 a.60.1.2,a.118.1.13 87517,87518 1w33A 181 1.42e+00 2dfkA 402 1.65e+00 2gyqA 175 1.97e+00 2a72A 146 2.00e+00 1x1nA 524 2.10e+00 1ow4A 129 2.11e+00 a.39.2.1 93628 1ecmA 109 2.17e+00 1ecmA a.130.1.1 19492 1z5hA 780 2.18e+00 1yyqA 374 2.44e+00 1zgyA 272 2.83e+00 1m32A 366 2.83e+00 c.67.1.3 78508 1rtwA 220 3.04e+00 a.132.1.3 97823 1huxA 270 3.23e+00 1huxA c.55.1.5 61278 2akaB 299 3.46e+00 1ylmA 144 3.67e+00 1vkeA 133 3.83e+00 a.152.1.2 108650 1i5nA 146 3.98e+00 1i5nA a.24.10.3 61805 1ofcX 304 4.46e+00 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 2ahqA 76 4.76e+00 2azjA 289 4.91e+00 1h3qA 140 4.97e+00 d.110.4.3 76652 1sz9A 144 5.31e+00 a.118.9.4 106139 1ry6A 360 5.69e+00 c.37.1.9 98090 1e7lA 157 5.71e+00 1en7A a.140.4.1,d.4.1.5 64728,64729 1rxqA 178 5.74e+00 a.213.1.1 105118 1iw0A 215 5.97e+00 a.132.1.1 83720 2b67A 204 6.23e+00 1vkmA 297 6.45e+00 c.138.1.1 108670 2al6A 375 6.90e+00 1wzdA 215 7.21e+00 1rw6A 210 7.59e+00 a.47.4.1 105113 2b2hA 399 8.03e+00 1aisB 200 8.65e+00 1aisB a.74.1.2,a.74.1.2 18384,18385 1ybdA 239 8.82e+00 1b9uA 34 9.02e+00 1b9uA j.35.1.1 46260 2gnoA 305 9.15e+00 1t3wA 148 9.33e+00 1gntA 553 9.35e+00 e.26.1.1 70290 1yxcA 292 9.37e+00 2gdqA 382 9.42e+00 1mkiA 330 9.51e+00 e.3.1.2 84994 1m70A 190 1.04e+01 a.3.1.4,a.3.1.4 91200,91201 1rcwA 231 1.07e+01 a.132.1.4 97299 1hx1B 114 1.07e+01 1hx1B a.7.7.1 61350 1dowA 205 1.08e+01 1dovA a.24.9.1 16626 3grs 478 1.09e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1sumB 235 1.11e+01 a.7.12.1 106025 2fx0A 201 1.13e+01 1j1iA 296 1.14e+01 c.69.1.10 83977 2ap3A 199 1.15e+01 1n40A 396 1.18e+01 a.104.1.1 79977 1q5nA 454 1.18e+01 a.127.1.1 95901 2etdA 171 1.19e+01 1uw4B 248 1.20e+01 a.118.1.14 100072 1f60A 458 1.23e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1orsC 132 1.25e+01 f.14.1.1 87353 1t06A 235 1.27e+01 a.118.1.17 106194 1g60A 260 1.31e+01 c.66.1.11 70151 1zb1A 392 1.34e+01 1kpsB 171 1.39e+01 a.118.12.1 68787 1po5A 476 1.41e+01 a.104.1.1 94963 1zbqA 327 1.43e+01 1ll2A 333 1.44e+01 c.68.1.14 74005 2fs3A 282 1.47e+01 1wdcC 156 1.49e+01 1wdcC a.39.1.5 17317 1t56A 216 1.49e+01 a.4.1.9,a.121.1.1 106428,106429 2beqA 38 1.50e+01 2db0A 253 1.51e+01 1b5pA 385 1.51e+01 c.67.1.1 90403 1xx6A 191 1.52e+01 1zs3A 182 1.55e+01 2c6cA 707 1.56e+01 1ej2A 181 1.64e+01 1f9aA c.26.1.3 59414 1nc5A 373 1.64e+01 a.102.1.6 85548 1nu7D 282 1.69e+01 a.8.6.1,a.8.6.1 92191,92192 1jfbA 404 1.69e+01 a.104.1.1 66624 1u00A 227 1.75e+01 1ka2A 499 1.78e+01 d.92.1.5 77305 1x46A 150 1.79e+01 2b1eA 564 1.80e+01 1m8jA 181 1.86e+01 c.26.1.3 84875 1ug3A 339 1.88e+01 1oyzA 280 1.90e+01 a.118.1.16 93775 1r1hA 696 1.97e+01 d.92.1.4 104756 1mo9A 523 2.05e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1q8fA 313 2.05e+01 c.70.1.1 96203 1s9pA 227 2.14e+01 a.123.1.1 105384 1kn1B 161 2.14e+01 a.1.1.3 77456 1pprM 312 2.15e+01 1pprM a.131.1.1,a.131.1.1 19502,19503 2bptA 861 2.16e+01 1tafA 68 2.19e+01 1tafA a.22.1.3 16481 1lehA 364 2.19e+01 1bw9A c.2.1.7,c.58.1.1 30268,33916 2cw9A 194 2.20e+01 1uq5A 263 2.21e+01 d.165.1.1 99778 1cs0A 1073 2.21e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 2f2gA 221 2.22e+01 1i3dA 146 2.23e+01 a.1.1.2 61587 1l3lA 234 2.26e+01 a.4.6.2,d.110.5.1 73541,73542 1vf1A 229 2.31e+01 1umdA 367 2.33e+01 c.36.1.11 99599 1a9xA 1058 2.34e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1nrlA 316 2.37e+01 a.123.1.1 92091 1e85A 127 2.38e+01 1bbhA a.24.3.2 16549 1wy2A 351 2.48e+01 1hz4A 373 2.49e+01 a.118.8.2 65960 1lqtA 456 2.52e+01 c.3.1.1,c.4.1.1 74198,74199 1oaoC 729 2.52e+01 e.26.1.3 86746 1hu3A 260 2.57e+01 1hu3A a.118.1.14 19137 1k8kA 418 2.57e+01 c.55.1.1,c.55.1.1 68305,68306 1ash 150 2.68e+01 1ash a.1.1.2 15622 1bvoA 175 2.70e+01 1a3qA b.2.5.3 22457 1myt 146 2.77e+01 1a6m a.1.1.2 15207 1sa3A 262 2.78e+01 c.52.1.23 105400 1s3cA 141 2.79e+01 1rp4A 389 2.89e+01 a.227.1.1 105027 2ge3A 170 2.91e+01 1wmiA 90 2.95e+01 1w5fA 353 3.00e+01 1wusA 180 3.01e+01 1gkpA 458 3.01e+01 b.92.1.3,c.1.9.6 70231,70232 2chnA 716 3.03e+01 1ji6A 589 3.07e+01 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1y7yA 74 3.14e+01 1t94A 459 3.15e+01 d.240.1.1,e.8.1.7 106701,106702 2ew2A 316 3.19e+01 1vf6C 72 3.22e+01 a.194.1.1 100602 1ie9A 259 3.24e+01 1db1A a.123.1.1 62318 1kcfA 258 3.24e+01 a.140.2.1,c.55.3.7 68434,68435 1n46A 258 3.26e+01 a.123.1.1 85315 1u7gA 385 3.28e+01 f.44.1.1 107723 1zejA 293 3.30e+01 1hyp 80 3.42e+01 1hyp a.52.1.1 17806 1dc1A 323 3.43e+01 1dc1A c.52.1.11 33321 1zcdA 388 3.44e+01 1siqA 392 3.46e+01 a.29.3.1,e.6.1.1 105585,105586 1uekA 275 3.48e+01 d.14.1.5,d.58.26.5 88483,88484 1o08A 221 3.49e+01 c.108.1.6 86525 1eg3A 261 3.51e+01 1eg3A a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 1b25A 619 3.53e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1qgtA 149 3.55e+01 1qgtA a.62.1.1 18135 2choA 716 3.57e+01 1heiA 451 3.60e+01 1heiA c.37.1.14,c.37.1.14 32463,32464 1iomA 377 3.65e+01 a.103.1.1 83698 1y74A 57 3.67e+01 1fjlA 81 3.68e+01 2hddA a.4.1.1 16017 1yrcA 414 3.74e+01 1dp4A 435 3.77e+01 1dp4A c.93.1.1 35710 1yuzA 202 3.80e+01 1rr7A 129 3.84e+01 a.4.1.14 105075 1jpzA 473 3.87e+01 a.104.1.1 67069 1e5rA 290 3.90e+01 1e5rA b.82.2.4 59276 1fkmA 396 3.94e+01 1fkmA a.69.2.1,a.69.2.1 18315,18316 1paqA 189 4.00e+01 a.118.1.14 94413 1ykuA 136 4.01e+01 1zu4A 320 4.08e+01 1unlD 208 4.08e+01 1wmwA 330 4.13e+01 1y7lA 316 4.14e+01 1m0kA 262 4.18e+01 f.13.1.1 78344 1em9A 154 4.19e+01 1d1dA a.73.1.1 18333 1u7lA 392 4.20e+01 1wudA 89 4.20e+01 1wlmA 151 4.23e+01 1yovA 537 4.23e+01 1k47A 337 4.28e+01 d.14.1.5,d.58.26.4 72040,72041 1syyA 346 4.29e+01 a.25.1.2 106126 1x3kA 152 4.30e+01 1mg7A 417 4.31e+01 d.14.1.6,d.58.26.6 84954,84955 2gb7A 305 4.37e+01 2bkrA 212 4.37e+01 1jqnA 883 4.39e+01 c.1.12.3 77159 1oohA 126 4.49e+01 a.39.2.1 93383 2bb6A 414 4.57e+01 2bk9A 153 4.59e+01 1v7bA 185 4.59e+01 2be4A 272 4.60e+01 1xffA 240 4.71e+01 d.153.1.1 109580 1r8eA 278 4.76e+01 a.6.1.3,d.60.1.1 104843,104844 1jysA 242 4.76e+01 c.56.2.1 77216 1z67A 135 4.83e+01 2absA 383 4.84e+01 1ocsA 162 4.90e+01 d.189.1.1 92776 1xfrA 128 4.91e+01 1j1jA 240 5.00e+01 a.118.16.1 90762 1tu9A 134 5.02e+01 a.1.1.2 107320 2au3A 407 5.02e+01 1np3A 338 5.08e+01 a.100.1.2,c.2.1.6 85946,85947 1ub0A 258 5.09e+01 c.72.1.2 88394 1io7A 368 5.10e+01 1f4tA a.104.1.1 18971 1g4wR 383 5.15e+01 1g4uS a.24.11.1,c.45.1.2 16644,32692 1x79B 112 5.15e+01 1zhcA 76 5.21e+01 1elkA 157 5.21e+01 1dvpA a.118.9.2 19217 1h3nA 878 5.21e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1iv8A 720 5.31e+01 b.71.1.1,c.1.8.1 76842,76843 1wy1A 172 5.31e+01 1yi8A 351 5.32e+01 1x52A 124 5.33e+01 1pz1A 333 5.33e+01 c.1.7.1 95390 1dmhA 311 5.38e+01 1dmhA b.3.6.1 22633 1x9mA 698 5.39e+01 1vqoM 195 5.41e+01 1vfgA 390 5.42e+01 a.173.1.1,d.218.1.4 108570,108571 1uc2A 481 5.42e+01 d.261.1.1 99161 2fnaA 357 5.46e+01 2bhwA 232 5.51e+01 2ffeA 311 5.52e+01 1r6fA 310 5.53e+01 e.46.1.1 97149 1xsvA 113 5.61e+01 1mtyB 384 5.62e+01 1mtyB a.25.1.2 16740 1hw1A 239 5.65e+01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1f5nA 592 5.70e+01 1dg3A a.114.1.1,c.37.1.8 19077,32152 1z77A 200 5.78e+01 1squA 155 5.79e+01 d.252.1.1 98971 1b8dA 164 5.80e+01 1cpcA a.1.1.3 15665 1ovlA 271 5.81e+01 a.123.1.1 87455 2bfxA 284 5.83e+01 1v4aA 440 5.88e+01 a.24.16.4,d.218.1.9 108350,108351 1zp4A 304 5.90e+01 2akzA 439 5.94e+01 1fs1B 141 5.96e+01 1vcbB a.157.1.1,d.42.1.1 19252,38664 2g7lA 243 5.97e+01 1dq3A 454 6.02e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1ihgA 370 6.06e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 2awiA 317 6.09e+01 1c1kA 217 6.10e+01 1c1kA a.120.1.1 19239 1csh 435 6.10e+01 1csh a.103.1.1 18880 1h6kA 757 6.14e+01 a.118.1.14,a.118.1.14,a.118.1.14 60675,60676,60677 1zzpA 130 6.19e+01 1c7gA 456 6.23e+01 c.67.1.2 90415 1px5A 349 6.30e+01 a.160.1.2,d.218.1.6 95277,95278 1kblA 873 6.32e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1q6hA 224 6.37e+01 d.26.1.1 95975 1in6A 334 6.43e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1twdA 256 6.43e+01 c.1.30.1 107397 1in4A 334 6.44e+01 1hqcA a.4.5.11,c.37.1.20 62597,62598 1yrbA 262 6.45e+01 1lvfA 110 6.48e+01 a.47.2.1 74280 1rxwA 336 6.49e+01 a.60.7.1,c.120.1.2 98059,98060 2bvfA 459 6.50e+01 2gmyA 153 6.54e+01 1jnyA 435 6.56e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1l8rA 101 6.62e+01 a.6.1.4 73700 1wkqA 164 6.65e+01 c.97.1.2 109393 1kqfC 217 6.71e+01 f.21.1.1 72874 1su8A 636 6.74e+01 e.26.1.2 98999 1vf7A 369 6.78e+01 f.46.1.1 108557 1rvgA 305 6.82e+01 c.1.10.2 97920 1b79A 119 6.84e+01 1b79A a.81.1.1 18451 1yt3A 375 6.93e+01 1je8A 82 6.93e+01 a.4.6.2 77108 2ftxA 90 6.95e+01 1q68B 29 6.95e+01 j.108.1.1 95963 1d9cA 121 6.96e+01 1d9cA a.26.1.3 16901 1vljA 407 7.10e+01 e.22.1.2 108832 2ab0A 205 7.10e+01 1v9nA 360 7.15e+01 1kvkA 395 7.20e+01 d.14.1.5,d.58.26.3 73060,73061 2b8iA 77 7.26e+01 1h2sB 60 7.36e+01 f.13.1.1 76579 1ctqA 166 7.37e+01 1ctqA c.37.1.8 31965 2etsA 128 7.41e+01 1ec7A 446 7.45e+01 1bqg c.1.11.2,d.54.1.1 29218,38862 1r1tA 122 7.51e+01 a.4.5.5 104769 1txdA 385 7.56e+01 a.87.1.1,b.55.1.1 107422,107423 1a32 88 7.66e+01 1a32 a.16.1.2 16384 2cdqA 510 7.67e+01 1m4rA 151 7.69e+01 a.26.1.3 84799 1vh6A 145 7.70e+01 a.24.19.1 100644 1qhlA 227 7.73e+01 1qhlA c.37.1.12 32382 1yj7A 171 7.74e+01 1wrvA 308 7.76e+01 1oe4A 247 7.77e+01 c.18.1.3 86895 1ulyA 192 7.83e+01 1ywmA 200 7.84e+01 1ei7A 158 7.88e+01 1rmvA a.24.5.1 16584 1k94A 165 7.92e+01 a.39.1.8 68333 1khyA 148 7.92e+01 a.174.1.1 77410 1qd1A 325 7.97e+01 1qd1A d.58.34.1,d.58.34.1 39493,39494 2bl0C 142 7.97e+01 1s4bP 674 8.02e+01 d.92.1.5 105252 2evwX 166 8.03e+01 2cz2A 223 8.07e+01 1o5kA 306 8.09e+01 c.1.10.1 92504 1efnB 152 8.11e+01 1efnB d.102.1.1 40699 1dqeA 137 8.14e+01 1dqeA a.39.2.1 17388 2e2aA 105 8.18e+01 a.7.2.1 88499 1r0vA 305 8.31e+01 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 1zavA 180 8.32e+01 1colA 204 8.32e+01 1a87 f.1.1.1 43378 1xteA 154 8.32e+01 1sflA 238 8.36e+01 1winA 143 8.40e+01 1rqjA 299 8.41e+01 a.128.1.1 97744 2anxA 146 8.43e+01 1u5tB 169 8.58e+01 a.4.5.54,a.4.5.54 107686,107687 1qv9A 283 8.59e+01 c.127.1.1 96356 1qyiA 384 8.67e+01 c.108.1.13 96595 2a7mA 250 8.67e+01 1a99A 344 8.71e+01 1pot c.94.1.1 35812 1aba 87 8.74e+01 1aba c.47.1.1 32760 1q6uA 245 8.80e+01 d.26.1.1 95998 1wddA 477 8.86e+01 1gqiA 708 8.89e+01 c.1.8.10,d.92.2.2 76279,76280 2bnlA 136 8.91e+01 1l8nA 679 8.91e+01 c.1.8.10,d.92.2.2 84564,84565 1si2A 149 8.95e+01 b.34.14.1 105569 1yf2A 425 8.99e+01