# List of top-scoring protein chains for T0361.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2iugA 120 1.67e+00 1jj2B 337 2.09e+00 1ffkB b.43.3.2 63086 1vqoB 338 2.09e+00 1ffkB 337 2.14e+00 1ffkB b.43.3.2 25719 2bvfA 459 2.27e+00 1yl3E 338 2.39e+00 2hrvA 142 5.84e+00 2hrvA b.47.1.4 26429 1ehyA 294 7.44e+00 1ehyA c.69.1.11 34693 1av6A 295 1.10e+01 3mag c.66.1.25 34218 4dcg 307 1.12e+01 3mag c.66.1.25 34208 3mct 297 1.12e+01 3mag c.66.1.25 34215 1jteA 307 1.12e+01 c.66.1.25 71860 1eqa 297 1.12e+01 3mag c.66.1.25 34216 1eamA 307 1.12e+01 3mag c.66.1.25 34212 3mag 307 1.13e+01 3mag c.66.1.25 34205 1dq3A 454 1.20e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1v39 322 1.21e+01 3mag c.66.1.25 34206 1vp3 348 1.23e+01 3mag c.66.1.25 34209 2ga9A 297 1.31e+01 1vpt 348 1.44e+01 3mag c.66.1.25 34207 1fs7A 485 1.50e+01 1qdbA a.138.1.3 19691 1fs9A 507 1.54e+01 1qdbA a.138.1.3 19693 1v4aA 440 1.56e+01 a.24.16.4,d.218.1.9 108350,108351 1n4xH 120 1.61e+01 b.1.1.1 85324 1cl7H 135 1.71e+01 1gc1H b.1.1.1,b.1.1.2 20419,21389 1j4aA 333 2.01e+01 c.2.1.4,c.23.12.1 71502,71503 1ft2A 315 2.06e+01 1ft1A a.118.6.1 19190 1nl4A 312 2.15e+01 a.118.6.1 80617 1l3aA 227 2.16e+01 d.18.1.2 73531 1ni1A 315 2.16e+01 a.118.6.1 91888 1j49A 333 2.21e+01 c.2.1.4,c.23.12.1 71498,71499 1io8A 368 2.29e+01 1f4tA a.104.1.1 62618 1qbqA 333 2.34e+01 1ft1A a.118.6.1 19187 1io7A 368 2.34e+01 1f4tA a.104.1.1 18971 1jcrA 377 2.39e+01 a.118.6.1 66506 1o5mA 377 2.52e+01 a.118.6.1 92507 1o1tA 380 2.53e+01 a.118.6.1 86551 1xf5L 80 2.70e+01 1xctL 80 2.70e+01 1w33A 181 2.74e+01 1eepA 404 2.82e+01 1ak5 c.1.5.1 28636 1rtg 210 3.19e+01 1gen b.66.1.1 27537 1gen 218 3.25e+01 1gen b.66.1.1 27536 1t3kA 152 3.31e+01 c.46.1.1 106357 1tn6A 382 3.64e+01 2cv8A 180 3.77e+01 1svzA 247 3.79e+01 2cknA 95 3.87e+01 1nx8A 273 3.93e+01 b.82.2.8 86374 2cycA 375 4.13e+01 1msk 331 4.13e+01 1msk d.173.1.1 42495 1hqkA 154 4.20e+01 c.16.1.1 65902 2dddA 225 4.41e+01 1wyyA 149 4.44e+01 1dusA 194 4.45e+01 1dusA c.66.1.4 34182 1yy3A 346 4.51e+01 2pna 104 4.52e+01 1qadA d.93.1.1 40501 1aba 87 4.76e+01 1aba c.47.1.1 32760 1aazA 87 4.91e+01 1aba c.47.1.1 32761 1qdbA 473 5.11e+01 1qdbA a.138.1.3 19688 2bjnA 160 5.31e+01 1q8fA 313 5.46e+01 c.70.1.1 96203 1mg5A 255 5.49e+01 c.2.1.2 91264 1fu5A 111 5.55e+01 1qadA d.93.1.1 40505 1id4A 256 5.71e+01 1lay b.57.1.1 62291 2aw4J 142 6.01e+01 2c7bA 311 6.22e+01 2pdd 43 6.24e+01 1ebdC a.9.1.1 16358 1ebdC 41 6.25e+01 1ebdC a.9.1.1 16355 1cmvA 256 6.42e+01 1lay b.57.1.1 27015 1x65A 89 6.43e+01 1iedA 256 6.52e+01 1lay b.57.1.1 62321 1yb2A 275 6.56e+01 1ark 60 6.66e+01 1bb9 b.34.2.1 24473 1lay 256 7.09e+01 1lay b.57.1.1 27014 1nkkA 256 7.16e+01 b.57.1.1 80567 1b9uA 34 7.23e+01 1b9uA j.35.1.1 46260 1cjmA 295 7.28e+01 1aquA c.37.1.5 31950 1njtA 256 7.35e+01 b.57.1.1 80555 1rh5A 436 7.42e+01 f.41.1.1 97464 1lf9B 674 7.42e+01 a.102.1.5,b.30.5.5 77924,77925 1jq6A 256 7.43e+01 b.57.1.1 63226 1rhzA 436 7.50e+01 f.41.1.1 97495 1wpoA 256 7.50e+01 1lay b.57.1.1 27012 1lf6A 684 7.56e+01 a.102.1.5,b.30.5.5 77918,77919 1ekeA 230 7.68e+01 1ekeA c.55.3.1 33572 2f2fC 186 7.75e+01 2wpoA 256 7.84e+01 1lay b.57.1.1 27017 2rslA 140 7.91e+01 2rslA c.53.1.1 33345 1iecA 256 7.97e+01 1lay b.57.1.1 62319 1wncA 112 8.06e+01 h.3.3.1 109428 1w85I 49 8.15e+01 1gdtA 183 8.55e+01 2rslA a.4.1.2,c.53.1.1 16021,33348 1ymhE 65 8.56e+01 1uulA 202 8.68e+01 1iefA 256 8.75e+01 1lay b.57.1.1 62324 1tbuA 118 8.77e+01 1iegA 256 8.90e+01 1lay b.57.1.1 62326 1w4gA 47 8.93e+01