# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1f45B 197 1.92e+00 1f45B a.26.1.1 59642 2aelA 374 5.49e+00 1dq3A 454 5.94e+00 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1omwA 689 6.89e+00 a.91.1.1,b.55.1.1,d.144.1.7 87086,87087,87088 1wmiA 90 7.47e+00 1w33A 181 8.96e+00 1t0fA 276 9.39e+00 1v4eA 299 9.61e+00 a.128.1.1 100296 1f1zA 273 9.86e+00 1f1zA a.4.5.27,c.52.1.16 16081,33334 1yyqA 374 9.92e+00 2eu9A 355 1.04e+01 2ahqA 76 1.06e+01 2dfkA 402 1.06e+01 1kiyA 374 1.09e+01 a.128.1.5 72555 1rtwA 220 1.16e+01 a.132.1.3 97823 2aq8A 269 1.52e+01 1t3wA 148 1.55e+01 1ciy 590 1.56e+01 1ciy b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 2b7aA 293 1.68e+01 1de4C 640 1.70e+01 1cx8B a.48.2.1,c.8.4.1,c.56.5.5 17779,30760,33848 1rqjA 299 1.80e+01 a.128.1.1 97744 2fbnA 198 1.86e+01 1ll2A 333 2.07e+01 c.68.1.14 74005 1rxqA 178 2.09e+01 a.213.1.1 105118 1y1xA 191 2.10e+01 1e7lA 157 2.29e+01 1en7A a.140.4.1,d.4.1.5 64728,64729 2gyqA 175 2.33e+01 1au1A 166 2.43e+01 1ifa a.26.1.3 16889 1nc5A 373 2.54e+01 a.102.1.6 85548 1w7jA 795 2.60e+01 1e2uA 553 2.66e+01 1e1dA e.26.1.1 43362 1gntA 553 2.68e+01 e.26.1.1 70290 1r3sA 367 2.72e+01 c.1.22.1 96963 1x92A 199 2.74e+01 1oohA 126 2.87e+01 a.39.2.1 93383 1z57A 339 2.89e+01 1h3qA 140 2.90e+01 d.110.4.3 76652 1cpcA 162 3.02e+01 1cpcA a.1.1.3 15643 1oxjA 173 3.03e+01 a.60.1.2,a.118.1.13 87517,87518 2beqA 38 3.12e+01 1wudA 89 3.24e+01 1zl8A 53 3.28e+01 2db0A 253 3.31e+01 1oe9A 795 3.37e+01 b.34.3.1,c.37.1.9 92792,92793 1wdgA 94 3.38e+01 h.3.3.1 109248 1w5fA 353 3.64e+01 1rw6A 210 3.67e+01 a.47.4.1 105113 1wtyA 119 3.75e+01 2grrB 170 3.78e+01 1eg3A 261 3.81e+01 1eg3A a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 1h3nA 878 3.84e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1eny 268 4.23e+01 1eny c.2.1.2 29910 1b9uA 34 4.39e+01 1b9uA j.35.1.1 46260 2rslA 140 4.40e+01 2rslA c.53.1.1 33345 2bvfA 459 4.46e+01 2f94F 350 4.48e+01 1zgyA 272 4.48e+01 1bjwA 382 4.54e+01 1bjwA c.67.1.1 34349 1keyA 235 4.54e+01 a.118.16.1 72389 1yq7A 374 4.65e+01 3grs 478 4.67e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1b5pA 385 4.67e+01 c.67.1.1 90403 1huxA 270 4.68e+01 1huxA c.55.1.5 61278 1orsC 132 4.69e+01 f.14.1.1 87353 1vm8A 534 4.74e+01 1jykA 254 4.77e+01 c.68.1.13 67458 1jx6A 342 4.84e+01 c.93.1.1 67406 1ry6A 360 4.94e+01 c.37.1.9 98090 1uroA 367 5.01e+01 1uroA c.1.22.1 29675 1kz7A 353 5.10e+01 a.87.1.1,b.55.1.1 73333,73334 1kn1B 161 5.47e+01 a.1.1.3 77456 1pz1A 333 5.52e+01 c.1.7.1 95390 1oo0A 147 5.55e+01 d.232.1.1 87182 1q5nA 454 5.57e+01 a.127.1.1 95901 1dkiA 371 5.61e+01 1dkiA d.3.1.1 37090 1zs3A 182 5.65e+01 1fiy 883 5.71e+01 1fiy c.1.12.3 29307 1sur 215 5.75e+01 1sur c.26.2.2 31620 1uc2A 481 5.77e+01 d.261.1.1 99161 1yv5A 374 5.92e+01 1my6A 199 5.97e+01 a.2.11.1,d.44.1.1 85232,85233 1x79B 112 6.04e+01 1wpoA 256 6.32e+01 1lay b.57.1.1 27012 1aisB 200 6.32e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1o6dA 163 6.33e+01 c.116.1.3 92567 1d9cA 121 6.36e+01 1d9cA a.26.1.3 16901 1k1xA 659 6.44e+01 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1fs1B 141 6.49e+01 1vcbB a.157.1.1,d.42.1.1 19252,38664 1g60A 260 6.68e+01 c.66.1.11 70151 3gcb 470 6.84e+01 3gcb d.3.1.1 37032 1x3kA 152 6.85e+01 1mo9A 523 6.88e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1dik 874 6.99e+01 1dik c.1.12.2,c.8.1.1,d.142.1.5 29304,30702,41572 1rlzA 369 7.00e+01 c.31.1.1 104989 1gcb 454 7.08e+01 3gcb d.3.1.1 37034 1x1nA 524 7.17e+01 1cp2A 269 7.19e+01 1cp2A c.37.1.10 32269 1n28A 124 7.29e+01 a.133.1.2 91550 1vkmA 297 7.32e+01 c.138.1.1 108670 1cktA 71 7.44e+01 1cktA a.21.1.1 16417 2b3hA 329 7.45e+01 2g9zA 348 7.51e+01 1dar 691 7.65e+01 1dar b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1 25707,32142,37547,39300 1e5rA 290 7.74e+01 1e5rA b.82.2.4 59276 2akaB 299 7.98e+01 1px5A 349 8.00e+01 a.160.1.2,d.218.1.6 95277,95278 1ylmA 144 8.24e+01 1myt 146 8.26e+01 1a6m a.1.1.2 15207 1pv9A 348 8.27e+01 c.55.2.1,d.127.1.1 95157,95158 1m5wA 243 8.38e+01 c.1.24.1 84836 1b8dA 164 8.42e+01 1cpcA a.1.1.3 15665 1ass 159 8.46e+01 1a6dA c.8.5.2 30818 2b67A 204 8.46e+01 1nm8A 616 8.48e+01 c.43.1.3,c.43.1.3 85872,85873 1mkiA 330 8.62e+01 e.3.1.2 84994 1kvoA 124 8.63e+01 1poa a.133.1.2 19564 1hn2A 159 8.65e+01 b.60.1.1 65890 1gt1A 159 8.70e+01 b.60.1.1 90515 1jh6A 189 8.94e+01 d.61.1.1 66707