# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1htjF 210 3.19e-01 1htjF a.91.1.1 61254 1w33A 181 3.23e-01 1io7A 368 2.21e+00 1f4tA a.104.1.1 18971 1vqoB 338 2.27e+00 1b5eA 246 3.03e+00 1b5eA d.117.1.1 41056 1ej2A 181 3.24e+00 1f9aA c.26.1.3 59414 1m8jA 181 3.53e+00 c.26.1.3 84875 1bm9A 122 4.22e+00 1bm9A a.4.5.7 16116 1f45B 197 4.79e+00 1f45B a.26.1.1 59642 1dusA 194 4.81e+00 1dusA c.66.1.4 34182 1s72B 338 5.37e+00 b.43.3.2 105320 1jj2B 337 5.50e+00 1ffkB b.43.3.2 63086 1r0vA 305 5.66e+00 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 2bvfA 459 6.06e+00 2iugA 120 6.21e+00 1mnnA 340 6.53e+00 b.2.5.7 79324 1or7A 194 6.91e+00 a.4.13.2,a.177.1.1 87332,87333 1ho8A 480 8.45e+00 1ho8A a.118.1.9 61107 1k2eA 156 9.24e+00 d.113.1.1 72010 1z8fA 228 1.00e+01 1u5tB 169 1.07e+01 a.4.5.54,a.4.5.54 107686,107687 2g3kA 94 1.22e+01 1w7jA 795 1.23e+01 1v4eA 299 1.31e+01 a.128.1.1 100296 1s4qA 228 1.45e+01 c.37.1.1 98507 2ar1A 172 1.50e+01 1ug8A 87 1.52e+01 d.68.7.1 107825 1ksoA 101 1.56e+01 a.39.1.2 72926 1q8fA 313 1.58e+01 c.70.1.1 96203 2br9A 234 1.58e+01 1c02A 166 1.62e+01 1qspA a.24.10.2 16633 1paqA 189 1.64e+01 a.118.1.14 94413 1y74A 57 1.73e+01 1qmqA 414 1.75e+01 1phd a.104.1.1 18907 2azqA 311 1.75e+01 1szqA 483 1.81e+01 e.44.1.1 99045 2aawA 222 1.84e+01 1oktA 211 1.85e+01 a.45.1.1,c.47.1.5 93272,93273 1oe9A 795 1.89e+01 b.34.3.1,c.37.1.9 92792,92793 2etsA 128 1.95e+01 2fx0A 201 1.97e+01 1zrzA 364 2.26e+01 1czfA 362 2.31e+01 1czfA b.80.1.3 28031 1gw5A 621 2.33e+01 a.118.1.10 70629 1oz2A 331 2.45e+01 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1kjvB 100 2.61e+01 b.1.1.2 77423 1ro2A 216 2.70e+01 d.264.1.2 97665 1iyjB 817 2.72e+01 a.170.1.1,a.171.1.1,b.40.4.3,b.40.4.3,b.40.4.3 76948,76949,76950,76951,76952 1uxaA 194 2.72e+01 b.21.1.1 108091 1gz2A 142 2.80e+01 d.169.1.1 83392 2rslA 140 2.92e+01 2rslA c.53.1.1 33345 1z9lA 128 2.92e+01 1r8eA 278 3.17e+01 a.6.1.3,d.60.1.1 104843,104844 1re9A 414 3.25e+01 1xp8A 366 3.40e+01 1sw5B 275 3.43e+01 c.94.1.1 106070 1m45A 148 3.53e+01 a.39.1.5 78598 2ahqA 76 3.59e+01 1ro0A 216 3.62e+01 d.264.1.2 97664 1ymmB 198 3.66e+01 1ll2A 333 3.68e+01 c.68.1.14 74005 1fvuA 133 3.77e+01 1ixxB d.169.1.1 42345 1owqA 361 3.85e+01 c.1.8.5,d.26.3.1 104041,104042 1ygmA 118 3.89e+01 1i1iP 681 4.10e+01 1i1iP d.92.1.5 40297 1st0A 337 4.13e+01 d.13.1.3,d.246.1.1 98979,98980 2fauA 341 4.26e+01 2grrB 170 4.26e+01 1rw1A 114 4.33e+01 1mwqA 101 4.38e+01 d.58.4.7 91481 1lvfA 110 4.38e+01 a.47.2.1 74280 2cj4A 150 4.64e+01 1au1A 166 4.67e+01 1ifa a.26.1.3 16889 1w2wA 211 4.71e+01 c.124.1.5 109130 1zglB 192 4.95e+01 1zbsA 291 4.97e+01 1l1oC 181 5.16e+01 b.40.4.3 73480 1rj1A 151 5.21e+01 a.29.6.1 97526 1qhdA 398 5.48e+01 1qhdA a.115.1.2,b.19.1.1 63324,63325 1oyzA 280 5.61e+01 a.118.1.16 93775 1xizA 159 5.63e+01 1sw5A 275 5.65e+01 c.94.1.1 106069 1wr2A 238 5.67e+01 1zatA 250 5.94e+01 1iae 200 6.13e+01 1iae d.92.1.8 40311 1y0gA 191 6.24e+01 1j6qA 136 6.25e+01 b.40.9.1 77091 1wudA 89 6.30e+01 2be4A 272 6.37e+01 1d8hA 311 6.59e+01 1d8iA d.63.1.1 39544 1dpe 507 6.64e+01 1dpe c.94.1.1 35799 1fs7A 485 6.91e+01 1qdbA a.138.1.3 19691 1repC 251 6.96e+01 1repC a.4.5.10,a.4.5.10 16125,16126 1uspA 139 7.27e+01 d.227.1.1 99879 1pbyA 489 7.75e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 2db0A 253 7.75e+01 1yrgA 385 7.83e+01 1yrgA c.10.1.2 30854 1x65A 89 7.87e+01 2bkrA 212 7.90e+01 1wvcA 259 8.02e+01 1regX 122 8.05e+01 1regX d.58.27.1 39406 1d8dA 377 8.09e+01 1ft1A a.118.6.1 19185 1iab 200 8.17e+01 1iae d.92.1.8 40312 1jf8A 131 8.19e+01 c.44.1.1 66621 1o17A 345 8.22e+01 a.46.2.1,c.27.1.1 80765,80766 1cc1L 498 8.26e+01 1h2rL e.18.1.1 43301 1ry6A 360 8.29e+01 c.37.1.9 98090 1zs3A 182 8.55e+01 1xiwA 105 8.57e+01 2bw3A 534 8.71e+01 1xhcA 367 8.74e+01 1kp8A 547 8.77e+01 a.129.1.1,c.8.5.1,d.56.1.1 84414,84415,84416 1xsvA 113 8.94e+01 1wkqA 164 8.94e+01 c.97.1.2 109393