# List of top-scoring protein chains for t2k-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dvoA 152 9.07e-13 1dvoA a.136.1.1 19623 1dpuA 99 2.11e+00 1dpuA a.4.5.16 16150 1x8bA 289 2.86e+00 1hw1A 239 2.87e+00 1e2xA a.4.5.6,a.78.1.1 16111,18441 1z5hA 780 3.62e+00 2ffsA 157 4.51e+00 1zvdA 380 5.11e+00 1z1dA 103 6.64e+00 1qsgA 265 7.05e+00 1eny c.2.1.2 29935 1yr2A 741 7.79e+00 1c14A 262 8.21e+00 1eny c.2.1.2 29927 2av5A 120 8.21e+00 2fswA 107 8.47e+00 1e2xA 243 9.49e+00 1e2xA a.4.5.6,a.78.1.1 16113,18443 1pmzA 86 9.56e+00 a.39.1.10 104195 1jksA 294 9.78e+00 d.144.1.7 71710 1qg6A 261 1.13e+01 1eny c.2.1.2 29919 1txdA 385 1.24e+01 a.87.1.1,b.55.1.1 107422,107423 1wrvA 308 1.30e+01 2arsA 262 1.33e+01 1an7A 136 1.38e+01 1seiA d.140.1.1 41465 1v3wA 173 1.39e+01 b.81.1.5 100291 1awcA 110 1.43e+01 1awcA a.4.5.21 16167 1jqjC 343 1.55e+01 a.80.1.1,c.37.1.20 67097,67098 1j2jB 45 1.63e+01 a.7.8.1 84017 1psdA 409 1.66e+01 1psdA c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1njhA 119 1.71e+01 b.128.1.1 85787 1pme 380 1.76e+01 1hcl d.144.1.7 41653 2cybA 323 1.82e+01 1v71A 323 1.87e+01 1ucrA 78 1.90e+01 a.4.5.45 99188 1r3eA 309 1.90e+01 b.122.1.1,d.265.1.2 96907,96908 2b5gA 171 1.93e+01 3erk 364 2.02e+01 1hcl d.144.1.7 41654 1zelA 298 2.14e+01 1dklA 410 2.29e+01 1dklA c.60.1.2 33996 1wa5C 960 2.29e+01 2aucA 126 2.32e+01 1isaA 192 2.32e+01 1avmA a.2.11.1,d.44.1.1 15731,38724 1mj3A 260 2.36e+01 c.14.1.3 79183 1sc6A 404 2.36e+01 1dkmA 410 2.38e+01 1dklA c.60.1.2 34000 1tca 317 2.43e+01 1tca c.69.1.17 34726 1duxC 94 2.45e+01 1awcA a.4.5.21 16170 1xppA 115 2.52e+01 1vlrA 350 2.70e+01 d.13.1.3,d.246.1.1 108860,108861 1dkgA 197 2.72e+01 1dkgA b.73.1.1,h.1.9.1 27812,45626 1k9uA 78 2.73e+01 a.39.1.10 84348 1v4xB 146 2.77e+01 a.1.1.2 108364 1fosE 60 2.78e+01 h.1.3.1 45535 1bc8C 93 2.78e+01 1awcA a.4.5.21 16168 2c8mA 262 2.79e+01 2ae2A 260 2.86e+01 1bdb c.2.1.2 29945 1ov9A 50 2.94e+01 a.155.1.1 93591 1owcA 427 2.97e+01 a.103.1.1 104039 1mzbA 136 2.98e+01 a.4.5.42 91497 1kzyC 259 3.12e+01 c.15.1.4,c.15.1.4 73383,73384 1lghB 45 3.15e+01 1lghB f.3.1.1 43734 1dkqA 410 3.28e+01 1dklA c.60.1.2 33998 1xmaA 145 3.31e+01 2bycA 137 3.31e+01 2a8kA 108 3.32e+01 2be4A 272 3.34e+01 1iscA 192 3.36e+01 1avmA a.2.11.1,d.44.1.1 15733,38726 2apoA 357 3.46e+01 1fjgI 128 3.47e+01 1fjfI d.14.1.1 37559 1vp7A 100 3.52e+01 1xx4A 261 3.66e+01 2dubE 261 3.68e+01 1nzyA c.14.1.3 30916 1hqvA 191 3.86e+01 1hqvA a.39.1.8 61160 1f53A 84 4.04e+01 1f53A b.11.1.4 23632 1tvoA 368 4.04e+01 1vehA 92 4.05e+01 1b65A 375 4.07e+01 1b65A d.154.1.1 42020 1rtxA 123 4.11e+01 a.1.1.1 97827 1k3pA 426 4.41e+01 a.103.1.1 77237 1ffkC 246 4.43e+01 1ffkC c.22.1.1 31037 1miwA 404 4.50e+01 a.173.1.1,d.218.1.4 79162,79163 1usyA 275 4.63e+01 1ztcA 221 4.73e+01 1u8xX 472 4.75e+01 c.2.1.5,d.162.1.2 107741,107742 1klnA 605 4.87e+01 1xwl c.55.3.5,e.8.1.1 33693,42986 1gvjA 146 4.94e+01 a.4.5.21 90525 1opc 110 4.99e+01 1opc a.4.6.1 16231 1qu1A 155 5.06e+01 1qu1A h.3.1.1 45670 1al6 437 5.06e+01 1csh a.103.1.1 18885 1kmvA 186 5.07e+01 c.71.1.1 72757 1s72C 246 5.18e+01 c.22.1.1 105321 1jj2C 246 5.19e+01 1ffkC c.22.1.1 63087 2fhzB 108 5.20e+01 1thx 115 5.21e+01 1thx c.47.1.1 32732 2tysA 268 5.23e+01 2tysA c.1.2.4 28572 2ga1A 106 5.34e+01 2awpA 198 5.41e+01 1cv2A 296 5.81e+01 1bn6A c.69.1.8 34680 1xygD 359 5.84e+01 1tz9A 367 5.85e+01 c.1.15.6 107466 1vdxA 184 5.94e+01 1twfF 155 5.97e+01 2fu4A 83 5.98e+01 1vgjA 184 6.05e+01 6gsvA 217 6.06e+01 1b8xA a.45.1.1,c.47.1.5 17633,32925 1dkgB 197 6.12e+01 1dkgA b.73.1.1,h.1.9.1 27813,45627 1o5zA 442 6.15e+01 c.59.1.2,c.72.2.2 92530,92531 1aoa 275 6.21e+01 1aoa a.40.1.1,a.40.1.1 17396,17397 1vpbA 451 6.31e+01 1vqoC 246 6.33e+01 1a02F 56 6.38e+01 1a02F h.1.3.1 45534 1odd 118 6.48e+01 1opc a.4.6.1 16232 1v9wA 130 6.54e+01 c.47.1.16 108453 2bjqA 345 6.59e+01 1snyA 267 6.64e+01 c.2.1.2 105833 1i76A 163 6.65e+01 1hfc d.92.1.11 61877 1qjbA 245 6.77e+01 1qjaA a.118.7.1 19202 1qapA 296 6.85e+01 1qpoA c.1.17.1,d.41.2.1 29559,38595 1hbxG 157 6.86e+01 1awcA a.4.5.21 60934 1rm6C 161 6.94e+01 1ryp1 222 7.01e+01 1ryp1 1g2qA 187 7.11e+01 c.61.1.1 65117 1ujnA 348 7.39e+01 e.22.1.1 99460 1dszB 85 7.42e+01 2nllB g.39.1.2 45108 1jo0A 98 7.53e+01 d.68.4.1 77140 1p4fA 293 7.57e+01 d.144.1.7 104063 1fuiA 591 7.59e+01 1fuiA b.43.2.1,c.85.1.1 25674,35444 1amz 435 7.61e+01 1csh a.103.1.1 18884 1g0uL 241 7.70e+01 d.153.1.4 41894 1c8pA 102 8.06e+01 1c8pA b.1.2.1 22040 1tdpA 111 8.20e+01 a.29.8.1 106781 1mj5A 302 8.24e+01 c.69.1.8 91285 1hf8A 289 8.27e+01 1hg5A a.7.8.2,a.118.9.3 90354,90355 1spiA 358 8.32e+01 1frpA e.7.1.1 42939 2bl0B 145 8.36e+01 1wnfA 328 8.37e+01 1kf6D 119 8.40e+01 f.21.2.2 72400 1o4sA 389 8.43e+01 c.67.1.1 86620 1vg5A 73 8.44e+01 1l9lA 74 8.50e+01 a.64.1.1 77827 2chgA 226 8.70e+01 1usmA 80 8.77e+01 d.74.1.1 99876 1ykhB 132 8.84e+01 2wsyA 268 8.86e+01 2tysA c.1.2.4 28588 1pmaP 211 8.89e+01 1pmaP d.153.1.4 41863 1ef8A 261 8.99e+01 1ef8A c.14.1.3 30921