# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dvoA 152 4.65e-15 1dvoA a.136.1.1 19623 1ireB 228 3.85e-01 b.34.4.4 76770 1ugpB 226 3.90e-01 b.34.4.4 107832 1uujA 88 4.94e-01 a.221.1.1 108046 1pmzA 86 2.52e+00 a.39.1.10 104195 1k9uA 78 3.92e+00 a.39.1.10 84348 1e2xA 243 4.32e+00 1e2xA a.4.5.6,a.78.1.1 16113,18443 1yyvA 131 4.54e+00 1u35C 120 6.20e+00 2b0aA 186 6.64e+00 1yewA 382 6.65e+00 1hw1A 239 7.05e+00 1e2xA a.4.5.6,a.78.1.1 16111,18441 1zvdA 380 7.39e+00 2ctoA 93 9.38e+00 1whrA 124 1.12e+01 1z1dA 103 1.23e+01 2cs2A 134 1.44e+01 1fewA 184 1.51e+01 1fewA a.7.4.1 16334 1rec 201 1.51e+01 1rec a.39.1.5 17326 1g5gA 481 1.51e+01 f.12.1.1,h.3.2.1 65155,65156 2agmA 167 1.56e+01 1dpuA 99 1.63e+01 1dpuA a.4.5.16 16150 1an7A 136 1.65e+01 1seiA d.140.1.1 41465 1sbxA 106 1.69e+01 a.6.1.4 105414 1g5gB 481 1.72e+01 f.12.1.1,h.3.2.1 65157,65158 1x8bA 289 1.81e+01 1mkaA 171 1.88e+01 1mkaA d.38.1.2 38543 2cqeA 98 1.91e+01 1twfF 155 1.96e+01 2bjqA 345 2.00e+01 1v63A 101 2.03e+01 a.21.1.1 108391 2be4A 272 2.06e+01 1av1A 201 2.07e+01 1av1A h.5.1.1 45796 1y6nL 145 2.08e+01 2ilk 160 2.10e+01 2ilk a.26.1.3 16885 1jvr 137 2.32e+01 1jvr a.61.1.2 18132 1i50F 155 2.33e+01 a.143.1.2 61760 1v5iB 76 2.34e+01 1d6tA 117 2.35e+01 1a6f d.14.1.2 37565 2ae6A 166 2.41e+01 1uw0A 117 2.46e+01 g.39.1.12 108063 1z8sA 146 2.52e+01 1jqjC 343 2.52e+01 a.80.1.1,c.37.1.20 67097,67098 2d2mB 142 2.53e+01 2ethA 154 2.54e+01 1t3wA 148 2.55e+01 1ilk 151 2.57e+01 2ilk a.26.1.3 16886 1mzbA 136 2.63e+01 a.4.5.42 91497 1q4gA 553 2.64e+01 a.93.1.2,g.3.11.1 95789,95790 1wi5A 119 3.09e+01 2bnmA 198 3.20e+01 2a9uA 144 3.26e+01 1rm6C 161 3.27e+01 1c14A 262 3.30e+01 1eny c.2.1.2 29927 1c8pA 102 3.34e+01 1c8pA b.1.2.1 22040 1qg6A 261 3.42e+01 1eny c.2.1.2 29919 1odd 118 3.45e+01 1opc a.4.6.1 16232 1qsdA 106 3.46e+01 1qsdA a.7.5.1 16335 1w9yA 319 3.54e+01 1qsgA 265 3.59e+01 1eny c.2.1.2 29935 2bycA 137 3.64e+01 1w33A 181 3.69e+01 1s9kD 53 3.76e+01 1fjgI 128 3.85e+01 1fjfI d.14.1.1 37559 2astA 159 3.86e+01 1ugjA 141 3.88e+01 b.41.1.3 107826 1glv 303 3.94e+01 1gsa c.30.1.3,d.142.1.1 31721,41480 1qb2A 109 4.21e+01 1qb2A a.36.1.1 17125 2dfkA 402 4.30e+01 1z5hA 780 4.45e+01 1m5yA 408 4.85e+01 a.167.1.1,d.26.1.1,d.26.1.1 78664,78665,78666 1xttA 216 4.91e+01 1q52A 314 4.96e+01 c.14.1.3 95846 1opc 110 4.97e+01 1opc a.4.6.1 16231 2c8mA 262 5.00e+01 1nkl 78 5.10e+01 1nkl a.64.1.1 18140 1iakB 185 5.27e+01 1iakB b.1.1.2,d.19.1.1 21626,38200 1lepA 99 5.30e+01 1lepA b.35.1.1 24649 2av5A 120 5.35e+01 2fswA 107 5.51e+01 1k4mA 213 5.57e+01 c.26.1.3 77258 1xppA 115 5.57e+01 1yllA 200 5.58e+01 1ejaB 59 5.81e+01 1ejaB g.3.15.1 59416 1ykhB 132 6.00e+01 2arsA 262 6.01e+01 1jwyB 315 6.04e+01 c.37.1.8 67401 1u67A 600 6.13e+01 a.93.1.2,g.3.11.1 107697,107698 1ywxA 102 6.33e+01 1a02F 56 6.36e+01 1a02F h.1.3.1 45534 1txdA 385 6.42e+01 a.87.1.1,b.55.1.1 107422,107423 1elvA 333 6.44e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 1h7eA 245 6.57e+01 c.68.1.13 60717 1rq6A 62 6.61e+01 1k4iA 233 6.65e+01 d.115.1.2 72056 1nrvA 105 6.74e+01 d.93.1.1 86126 1n62A 166 6.92e+01 a.56.1.1,d.15.4.2 80090,80091 1aipC 196 7.00e+01 1tfe a.5.2.2,d.43.1.1 58930,58931 1wrvA 308 7.17e+01 1x2iA 75 7.32e+01 1exzA 141 7.33e+01 1exzA a.26.1.2 16877 1jroB 777 7.43e+01 d.41.1.1,d.133.1.1 67141,67142 1qc7A 101 7.49e+01 1qc7A a.118.14.1 18456 1cqeA 580 7.58e+01 1cqeA a.93.1.2,g.3.11.1 18703,44246 1jx2B 315 7.63e+01 c.37.1.8 67404 1ihgA 370 7.63e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 1u5tB 169 7.82e+01 a.4.5.54,a.4.5.54 107686,107687 1iscA 192 7.92e+01 1avmA a.2.11.1,d.44.1.1 15733,38726 1kkdA 102 7.94e+01 f.15.1.1 68668 1ocrC 261 7.97e+01 1ocrC f.25.1.1 43540 2a6sA 84 8.03e+01 1isaA 192 8.05e+01 1avmA a.2.11.1,d.44.1.1 15731,38724 1tfe 145 8.24e+01 1tfe d.43.1.1 38680 1hiwA 133 8.31e+01 1hiwA a.61.1.1 18122 2b5gA 171 8.64e+01 1xkpC 143 8.66e+01 1kwjA 68 8.69e+01 a.138.1.1 68877 1i4yA 114 8.75e+01 2mhr a.24.4.1 61738 1fp2A 352 8.78e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1lgpA 116 8.79e+01 b.26.1.2 73890 1hn6A 110 8.79e+01 g.61.1.1 76721 1wm3A 72 8.82e+01 1u00A 227 8.88e+01 1fosE 60 8.90e+01 h.1.3.1 45535 1b0pA 1231 8.97e+01 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 31831,31832,33104,34157,39003