# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dvoA 152 1.38e-15 1dvoA a.136.1.1 19623 1ugpB 226 5.76e-01 b.34.4.4 107832 1mzbA 136 1.82e+00 a.4.5.42 91497 1k9uA 78 2.38e+00 a.39.1.10 84348 1yyqA 374 3.00e+00 1z8sA 146 3.49e+00 1pmzA 86 3.73e+00 a.39.1.10 104195 1v5iB 76 3.92e+00 2ctoA 93 4.62e+00 1x3kA 152 5.14e+00 2ck3G 272 6.06e+00 1paqA 189 6.22e+00 a.118.1.14 94413 1hqsA 423 6.24e+00 1iso c.77.1.1 61154 1h8eG 272 6.49e+00 1e79G c.49.2.1 60756 1n3kA 130 6.75e+00 a.77.1.4 79965 1on2A 142 6.89e+00 a.4.5.24,a.76.1.1 87103,87104 2d2yA 145 7.07e+00 1zzmA 259 7.41e+00 1v63A 101 7.85e+00 a.21.1.1 108391 1uujA 88 8.25e+00 a.221.1.1 108046 2c8mA 262 8.58e+00 2agmA 167 9.02e+00 2cxxA 190 9.04e+00 2b0aA 186 9.19e+00 1q77A 138 9.25e+00 c.26.2.4 96023 1wwuA 99 9.78e+00 1r7jA 95 1.01e+01 a.4.5.49 104836 1s4bP 674 1.08e+01 d.92.1.5 105252 1vlpA 441 1.13e+01 d.41.2.2,d.41.2.3 108840,108841 2cs2A 134 1.27e+01 1vqoX 92 1.36e+01 1txdA 385 1.36e+01 a.87.1.1,b.55.1.1 107422,107423 1sglA 209 1.44e+01 d.124.1.1 105536 1x8bA 289 1.50e+01 1jpaA 312 1.54e+01 d.144.1.7 67011 1yewA 382 1.60e+01 1umnA 165 1.62e+01 a.25.1.1 99607 1woqA 267 1.62e+01 c.55.1.10,c.55.1.10 109462,109463 1k4mA 213 1.63e+01 c.26.1.3 77258 2a9uA 144 1.73e+01 1qsdA 106 1.74e+01 1qsdA a.7.5.1 16335 1odfA 290 1.84e+01 c.37.1.6 92782 1iybA 208 1.92e+01 d.124.1.1 90720 1opjA 293 2.06e+01 d.144.1.7 87230 2acvA 463 2.17e+01 1v3wA 173 2.36e+01 b.81.1.5 100291 2axyA 73 2.66e+01 1fjgI 128 2.71e+01 1fjfI d.14.1.1 37559 1qsgA 265 2.74e+01 1eny c.2.1.2 29935 1o5zA 442 2.80e+01 c.59.1.2,c.72.2.2 92530,92531 2gviA 204 2.86e+01 1z5hA 780 2.87e+01 1vd3A 217 2.89e+01 1vc3B 97 2.89e+01 2beiA 170 2.94e+01 1xttA 216 2.94e+01 1wzaA 488 2.95e+01 1sknP 92 3.05e+01 1sknP a.37.1.1 17127 2apoA 357 3.11e+01 1z1dA 103 3.23e+01 1p4cA 380 3.24e+01 c.1.4.1 94100 1uj8A 77 3.31e+01 2ch9A 131 3.41e+01 1w4tA 299 3.45e+01 2ahrA 259 3.64e+01 2b5gA 171 3.66e+01 1iqqA 200 3.71e+01 d.124.1.1 66274 1njrA 284 3.72e+01 c.50.1.2 103858 1m2tB 263 3.78e+01 b.42.2.1,b.42.2.1 84762,84763 1p4oA 322 3.85e+01 d.144.1.7 87775 2bycA 137 3.89e+01 1r62A 160 3.97e+01 d.122.1.3 104816 2fu4A 83 4.04e+01 1ekgA 127 4.10e+01 1dlxA d.82.2.1 40021 1qntA 176 4.14e+01 1sfe a.4.2.1,c.55.7.1 16074,33749 1f94A 63 4.16e+01 1f94A g.7.1.1 44435 1sgmA 191 4.16e+01 a.4.1.9,a.121.1.1 105537,105538 1usyA 275 4.16e+01 1u2pA 163 4.23e+01 1q9rB 222 4.31e+01 b.1.1.1,b.1.1.2 96307,96308 1se7A 83 4.64e+01 2exnA 136 4.67e+01 1n0uA 842 4.86e+01 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 79757,79758,79759,79760,79761 2a72A 146 4.91e+01 1u2zA 433 5.00e+01 c.66.1.31 107626 1wrvA 308 5.01e+01 1tfe 145 5.03e+01 1tfe d.43.1.1 38680 1d8hA 311 5.04e+01 1d8iA d.63.1.1 39544 1eceA 358 5.13e+01 1eceA c.1.8.3 28813 1u4bA 580 5.28e+01 c.55.3.5,e.8.1.1 107664,107665 2ffcA 353 5.30e+01 1yr2A 741 5.42e+01 1lnwA 147 5.43e+01 a.4.5.28 78104 2a77H 222 5.44e+01 1bg4 302 5.46e+01 1taxA c.1.8.3 28806 1nlbH 218 5.48e+01 b.1.1.1,b.1.1.2 80621,80622 1ezeA 38 5.56e+01 1ezeA j.39.1.1 46302 2au3A 407 5.84e+01 1ul4A 94 5.97e+01 g.72.1.1 99538 1nekD 115 6.03e+01 f.21.2.2 80432 2fbiA 142 6.09e+01 2cqeA 98 6.11e+01 1z7aA 308 6.13e+01 1eh8A 207 6.18e+01 1sfe a.4.2.1,c.55.7.1 16077,33752 1aj2 282 6.20e+01 1aj2 c.1.21.1 29665 1sz2A 332 6.29e+01 1ihgA 370 6.42e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 1whrA 124 6.42e+01 2cybA 323 6.51e+01 1p65A 73 6.51e+01 d.254.1.1 94156 1iscA 192 6.57e+01 1avmA a.2.11.1,d.44.1.1 15733,38726 1xzzA 246 6.67e+01 1w33A 181 6.82e+01 1jgsA 138 6.86e+01 a.4.5.28 66683 1x9uA 116 6.86e+01 1v4xB 146 6.87e+01 a.1.1.2 108364 2fnoA 248 6.95e+01 1nlwB 76 7.05e+01 a.38.1.1 80634 1vqo3 92 7.08e+01 1qczA 169 7.13e+01 1qczA c.23.8.1 31276 1uheA 97 7.21e+01 1xknA 355 7.23e+01 1q52A 314 7.24e+01 c.14.1.3 95846 1vp7A 100 7.28e+01 2b5nA 323 7.30e+01 1xpjA 126 7.43e+01 1czaN 917 7.46e+01 1qhaA c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1qc7A 101 7.49e+01 1qc7A a.118.14.1 18456 1hh5A 68 7.53e+01 1new a.138.1.1 61041 2ddfA 257 7.57e+01 1ptmA 329 7.66e+01 c.77.1.3 95104 1zy9A 564 7.75e+01 2ffsA 157 7.78e+01 1tujA 123 7.84e+01 1zvdA 380 8.01e+01 1sdiA 213 8.05e+01 a.198.1.1 105437 1g2qA 187 8.06e+01 c.61.1.1 65117 1b0nA 111 8.08e+01 1b0nA a.34.1.1,a.35.1.3 17001,17064 2bl0A 63 8.17e+01 1m7sA 484 8.24e+01 e.5.1.1 74574 1yllA 200 8.28e+01 1r3eA 309 8.29e+01 b.122.1.1,d.265.1.2 96907,96908 1myn 44 8.29e+01 1gpt g.3.7.4 44172 1gx3A 284 8.37e+01 d.3.1.5 70678 1q1oA 98 8.42e+01 d.15.2.2 95596 1kugA 203 8.46e+01 d.92.1.9 73008 1zwwA 256 8.46e+01 1s4kA 120 8.49e+01 a.35.1.6 105254 256bA 106 8.51e+01 256bA a.24.3.1 16539 1rf8B 100 8.54e+01 a.210.1.1 97371 1ydlA 79 8.73e+01 2gukA 120 8.84e+01 1zybA 232 8.88e+01 1mslA 109 8.93e+01 1mslA f.16.1.1 43660 1fjgQ 105 8.93e+01 1fjfQ b.40.4.5 25352 1jvr 137 8.98e+01 1jvr a.61.1.2 18132