# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dvoA 152 2.05e-14 1dvoA a.136.1.1 19623 1ireB 228 1.20e-01 b.34.4.4 76770 1ugpB 226 1.20e-01 b.34.4.4 107832 1yyvA 131 2.04e+00 2d2mB 142 2.60e+00 1vc3B 97 3.11e+00 1iakB 185 3.26e+00 1iakB b.1.1.2,d.19.1.1 21626,38200 1pmzA 86 3.40e+00 a.39.1.10 104195 1k9uA 78 4.10e+00 a.39.1.10 84348 1uujA 88 4.19e+00 a.221.1.1 108046 2agmA 167 4.37e+00 1s4bP 674 5.05e+00 d.92.1.5 105252 1w33A 181 5.59e+00 2cxxA 190 5.91e+00 1z8sA 146 5.96e+00 2ctoA 93 6.08e+00 1v5iB 76 6.26e+00 2c8mA 262 6.35e+00 1hqsA 423 6.99e+00 1iso c.77.1.1 61154 1mzbA 136 7.61e+00 a.4.5.42 91497 1zzmA 259 8.51e+00 1q77A 138 1.35e+01 c.26.2.4 96023 1n3kA 130 1.46e+01 a.77.1.4 79965 1jvr 137 1.61e+01 1jvr a.61.1.2 18132 1z1dA 103 1.74e+01 2apoA 357 1.75e+01 2arsA 262 1.75e+01 1dixA 208 1.87e+01 1bk7A d.124.1.1 41122 1iybA 208 2.00e+01 d.124.1.1 90720 1t3wA 148 2.04e+01 1dpuA 99 2.07e+01 1dpuA a.4.5.16 16150 1sglA 209 2.32e+01 d.124.1.1 105536 1fjgI 128 2.45e+01 1fjfI d.14.1.1 37559 2c2hA 192 2.58e+01 1xriA 151 2.69e+01 1yyqA 374 2.70e+01 1pgjA 478 2.78e+01 2pgd a.100.1.1,c.2.1.6 18783,30195 1uheA 97 2.79e+01 1x3kA 152 2.80e+01 1r62A 160 2.91e+01 d.122.1.3 104816 1j1uA 306 2.94e+01 c.26.1.1 83980 2aelA 374 2.98e+01 1ld8A 382 3.03e+01 a.118.6.1 73838 1d8dA 377 3.05e+01 1ft1A a.118.6.1 19185 1v63A 101 3.10e+01 a.21.1.1 108391 1txdA 385 3.33e+01 a.87.1.1,b.55.1.1 107422,107423 1f5nA 592 3.40e+01 1dg3A a.114.1.1,c.37.1.8 19077,32152 2beiA 170 3.41e+01 1vlpA 441 3.46e+01 d.41.2.2,d.41.2.3 108840,108841 1whrA 124 3.49e+01 1hw1A 239 3.54e+01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1u00A 227 3.60e+01 1wzaA 488 3.65e+01 1ji0A 240 3.66e+01 c.37.1.12 71665 1oj7A 408 3.91e+01 e.22.1.2 103971 1p4oA 322 3.97e+01 d.144.1.7 87775 1u35C 120 4.11e+01 1vqoX 92 4.13e+01 1opjA 293 4.32e+01 d.144.1.7 87230 1o5zA 442 4.34e+01 c.59.1.2,c.72.2.2 92530,92531 1kiyA 374 4.39e+01 a.128.1.5 72555 1jpaA 312 4.44e+01 d.144.1.7 67011 1odfA 290 4.46e+01 c.37.1.6 92782 1qsgA 265 4.46e+01 1eny c.2.1.2 29935 1z3eA 132 4.48e+01 2d2yA 145 4.61e+01 1on2A 142 4.68e+01 a.4.5.24,a.76.1.1 87103,87104 1x9uA 116 4.70e+01 1w4tA 299 4.77e+01 2a9uA 144 4.79e+01 1zvnA 99 4.79e+01 1ab8A 220 4.82e+01 1azsA d.58.29.1 39414 2go7A 207 4.82e+01 1xbtA 193 4.99e+01 1pbjA 125 4.99e+01 d.37.1.1,d.37.1.1 94414,94415 1azsB 212 5.01e+01 1azsA d.58.29.1 39423 1ti5A 46 5.03e+01 1woqA 267 5.20e+01 c.55.1.10,c.55.1.10 109462,109463 1fxrA 64 5.27e+01 1fxd d.58.1.4 38993 1wi5A 119 5.43e+01 1ekgA 127 5.51e+01 1dlxA d.82.2.1 40021 2fu4A 83 5.57e+01 1uw0A 117 5.68e+01 g.39.1.12 108063 1p65A 73 5.69e+01 d.254.1.1 94156 1qz4A 213 5.69e+01 a.198.1.1 96613 1z7aA 308 5.96e+01 2ch9A 131 5.97e+01 2b5gA 171 5.99e+01 1tfe 145 6.01e+01 1tfe d.43.1.1 38680 1yewA 382 6.07e+01 1mslA 109 6.09e+01 1mslA f.16.1.1 43660 2ahrA 259 6.14e+01 1tn6A 382 6.15e+01 1ir3A 306 6.18e+01 1fmk d.144.1.7 41702 1v4xB 146 6.22e+01 a.1.1.2 108364 1p4cA 380 6.23e+01 c.1.4.1 94100 1w4rA 195 6.39e+01 1lyvA 306 6.40e+01 c.45.1.2 74348 1vd3A 217 6.44e+01 1th1C 179 6.55e+01 1iqqA 200 6.60e+01 d.124.1.1 66274 1s72X 92 6.62e+01 d.29.1.1 105343 2bycA 137 6.68e+01 1jj2W 91 6.70e+01 1ffkU d.29.1.1 63108 2ck3G 272 6.70e+01 1sdiA 213 6.76e+01 a.198.1.1 105437 2gviA 204 6.84e+01 2fnoA 248 6.90e+01 1riqA 465 6.97e+01 a.203.1.1,d.104.1.1 97516,97517 2a72A 146 7.00e+01 1zgmA 248 7.02e+01 1cqkA 101 7.04e+01 1cqkA b.1.1.2 21547 1ytw 306 7.13e+01 1ytw c.45.1.2 32689 2ch0A 133 7.18e+01 1xzzA 246 7.37e+01 1o5kA 306 7.44e+01 c.1.10.1 92504 1e79G 272 7.46e+01 1e79G c.49.2.1 33158 1ucaA 190 7.47e+01 d.124.1.1 88462 1hgxA 183 7.57e+01 1tc1A c.61.1.1 34027 1r5zA 323 7.62e+01 f.40.1.1 97135 2exnA 136 7.66e+01 1h8eG 272 7.77e+01 1e79G c.49.2.1 60756 1ng6A 148 7.81e+01 a.182.1.1 85670 1r7jA 95 7.83e+01 a.4.5.49 104836 1zxiF 288 7.93e+01 1n62C 288 8.03e+01 d.87.2.1,d.145.1.3 80094,80095 1qntA 176 8.11e+01 1sfe a.4.2.1,c.55.7.1 16074,33749 2ethA 154 8.19e+01 1x8bA 289 8.22e+01 1dbhA 354 8.28e+01 1awe a.87.1.1,b.55.1.1 18514,26967 1m2tB 263 8.28e+01 b.42.2.1,b.42.2.1 84762,84763 1wrvA 308 8.30e+01 1rec 201 8.48e+01 1rec a.39.1.5 17326 1ydlA 79 8.50e+01 1wwbX 103 8.55e+01 1wwcA b.1.1.4 21777 1qj2C 285 8.58e+01 1qj2C 1ezeA 38 8.71e+01 1ezeA j.39.1.1 46302 2fclA 169 8.77e+01 1sgmA 191 8.78e+01 a.4.1.9,a.121.1.1 105537,105538 1m5yA 408 8.89e+01 a.167.1.1,d.26.1.1,d.26.1.1 78664,78665,78666