# TARGET T0359 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0359.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 1947 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 S 0.007 0.002 0.002 0.005 0.104 0.880 2 M 0.028 0.009 0.006 0.004 0.205 0.748 3 S 0.035 0.002 0.010 0.002 0.291 0.660 4 E 0.154 0.009 0.016 0.001 0.288 0.533 5 T 0.580 0.005 0.003 0.001 0.072 0.339 6 F 0.884 0.001 0.001 0.001 0.023 0.090 7 D 0.986 0.001 0.001 0.001 0.002 0.011 8 V 0.993 0.001 0.001 0.001 0.001 0.006 9 E 0.992 0.001 0.001 0.001 0.002 0.006 10 L 0.980 0.001 0.001 0.001 0.003 0.016 11 T 0.918 0.001 0.001 0.001 0.020 0.060 12 K 0.789 0.010 0.001 0.001 0.061 0.138 13 N 0.334 0.016 0.007 0.001 0.471 0.171 14 V 0.075 0.005 0.080 0.003 0.722 0.116 15 Q 0.066 0.005 0.100 0.003 0.706 0.120 16 G 0.162 0.008 0.046 0.001 0.604 0.179 17 L 0.308 0.010 0.007 0.001 0.259 0.414 18 G 0.768 0.010 0.002 0.001 0.061 0.158 19 I 0.921 0.004 0.001 0.001 0.017 0.056 20 T 0.969 0.002 0.001 0.001 0.007 0.021 21 I 0.959 0.003 0.001 0.001 0.010 0.026 22 A 0.870 0.005 0.001 0.002 0.037 0.085 23 G 0.620 0.005 0.003 0.003 0.131 0.238 24 Y 0.349 0.012 0.009 0.006 0.308 0.316 25 I 0.281 0.046 0.024 0.015 0.294 0.340 26 G 0.153 0.023 0.033 0.018 0.486 0.287 27 D 0.051 0.014 0.092 0.035 0.597 0.212 28 K 0.061 0.017 0.117 0.034 0.503 0.269 29 K 0.067 0.023 0.081 0.025 0.591 0.212 30 L 0.055 0.028 0.058 0.029 0.526 0.304 31 E 0.075 0.027 0.022 0.007 0.557 0.311 32 P 0.071 0.008 0.025 0.005 0.591 0.299 33 S 0.117 0.006 0.018 0.003 0.497 0.360 34 G 0.668 0.016 0.004 0.002 0.137 0.174 35 I 0.926 0.003 0.001 0.001 0.015 0.056 36 F 0.985 0.001 0.001 0.001 0.003 0.010 37 V 0.980 0.002 0.001 0.002 0.004 0.012 38 K 0.948 0.001 0.001 0.002 0.013 0.036 39 S 0.887 0.001 0.002 0.003 0.024 0.083 40 I 0.626 0.017 0.003 0.005 0.058 0.291 41 T 0.428 0.014 0.006 0.007 0.367 0.178 42 K 0.154 0.008 0.025 0.057 0.592 0.164 43 S 0.059 0.008 0.037 0.098 0.614 0.184 44 S 0.159 0.052 0.055 0.145 0.474 0.115 45 A 0.101 0.028 0.140 0.318 0.204 0.210 46 V 0.077 0.022 0.181 0.366 0.223 0.132 47 E 0.072 0.008 0.207 0.292 0.285 0.135 48 H 0.075 0.018 0.138 0.259 0.308 0.202 49 D 0.048 0.019 0.070 0.202 0.420 0.241 50 G 0.032 0.008 0.046 0.081 0.409 0.424 51 R 0.156 0.025 0.038 0.013 0.222 0.547 52 I 0.252 0.196 0.027 0.010 0.110 0.405 53 Q 0.153 0.056 0.018 0.005 0.749 0.019 54 I 0.030 0.003 0.009 0.005 0.943 0.011 55 G 0.008 0.001 0.008 0.005 0.966 0.012 56 D 0.660 0.038 0.003 0.003 0.290 0.007 57 Q 0.949 0.009 0.001 0.002 0.010 0.029 58 I 0.987 0.002 0.001 0.003 0.003 0.005 59 I 0.987 0.001 0.001 0.004 0.003 0.006 60 A 0.981 0.001 0.001 0.005 0.007 0.006 61 V 0.886 0.004 0.002 0.011 0.084 0.012 62 D 0.284 0.004 0.003 0.020 0.621 0.067 63 G 0.108 0.003 0.005 0.013 0.762 0.109 64 T 0.678 0.058 0.006 0.005 0.161 0.093 65 N 0.571 0.064 0.008 0.011 0.085 0.261 66 L 0.124 0.011 0.360 0.029 0.455 0.022 67 Q 0.055 0.001 0.155 0.014 0.738 0.037 68 G 0.014 0.002 0.118 0.017 0.799 0.050 69 F 0.103 0.078 0.007 0.008 0.607 0.197 70 T 0.048 0.039 0.001 0.009 0.037 0.867 71 N 0.001 0.001 0.020 0.945 0.014 0.019 72 Q 0.001 0.001 0.007 0.988 0.003 0.001 73 Q 0.001 0.001 0.004 0.994 0.001 0.001 74 A 0.001 0.001 0.001 0.998 0.001 0.001 75 V 0.001 0.001 0.001 0.998 0.001 0.001 76 E 0.001 0.001 0.001 0.996 0.002 0.001 77 V 0.001 0.001 0.002 0.994 0.003 0.001 78 L 0.001 0.001 0.003 0.991 0.004 0.001 79 R 0.002 0.001 0.005 0.977 0.015 0.002 80 H 0.002 0.001 0.006 0.918 0.046 0.027 81 T 0.005 0.009 0.013 0.496 0.142 0.334 82 G 0.004 0.001 0.003 0.002 0.187 0.803 83 Q 0.026 0.001 0.003 0.001 0.206 0.763 84 T 0.556 0.007 0.002 0.001 0.104 0.331 85 V 0.920 0.001 0.001 0.001 0.014 0.064 86 L 0.993 0.001 0.001 0.001 0.001 0.005 87 L 0.997 0.001 0.001 0.001 0.001 0.003 88 T 0.995 0.001 0.001 0.001 0.001 0.003 89 L 0.984 0.001 0.001 0.001 0.003 0.012 90 M 0.877 0.002 0.001 0.001 0.018 0.102 91 R 0.575 0.005 0.002 0.003 0.121 0.294 92 R 0.163 0.011 0.011 0.014 0.286 0.514 93 G 0.057 0.006 0.027 0.021 0.401 0.488 94 E 0.080 0.019 0.032 0.023 0.298 0.547 95 T 0.062 0.016 0.018 0.026 0.140 0.738 96 S 0.025 0.016 0.005 0.018 0.060 0.876 97 V 0.001 0.001 0.001 0.001 0.007 0.991