# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fe5A 94 9.28e-15 2fneA 117 1.83e-14 1g9oA 91 5.49e-14 1pdr b.36.1.1 60400 2fcfA 103 5.98e-14 1tp5A 119 1.34e-13 1qavA 90 8.10e-13 1qauA b.36.1.1 24777 1n7fA 97 1.77e-12 b.36.1.1 91692 2f0aA 98 2.37e-12 1n7eA 97 2.76e-12 b.36.1.1 91691 1q3oA 109 2.86e-12 b.36.1.1 95700 1ihjA 98 3.40e-12 1pdr b.36.1.1 62382 2h2bA 107 7.90e-12 1kwaA 88 1.04e-11 1kwaA b.36.1.1 24772 1mfgA 95 1.46e-11 b.36.1.1 79043 2h3lA 103 1.69e-11 1wf7A 103 3.14e-11 1nf3C 128 3.90e-11 b.36.1.1 85596 1qauA 112 4.28e-11 1qauA b.36.1.1 24779 2f5yA 91 5.72e-11 1r6jA 82 5.67e-10 b.36.1.1 97151 1fc6A 388 4.30e-06 1fc6A b.36.1.3,c.14.1.2 64738,64739 1lcyA 325 4.07e-05 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 1.08e-04 1y8tA 324 1.79e-03 1zn8A 180 3.16e-02 1qb7A 236 3.75e-02 1qb7A c.61.1.1 34087 1fxlA 167 4.61e-01 1b7fA d.58.7.1,d.58.7.1 39183,39184 1yg9A 330 5.76e-01 1x3mA 415 7.18e-01 1g2qA 187 8.71e-01 c.61.1.1 65117 1cliA 345 1.61e+00 1cliA d.79.4.1,d.139.1.1 39816,41459 1l1qA 186 1.96e+00 c.61.1.1 77653 2bh8A 101 2.08e+00 1bx4A 345 2.31e+00 1bx4A c.72.1.1 34935 2bw3A 534 2.69e+00 1fdr 248 2.96e+00 1fdr b.43.4.2,c.25.1.1 25653,31543 1xx6A 191 3.18e+00 1q52A 314 3.34e+00 c.14.1.3 95846 2iu4A 336 3.40e+00 2fvgA 340 4.41e+00 1o63A 219 4.77e+00 c.94.1.1 92540 1y0bA 197 5.56e+00 2az4A 429 6.77e+00 1qqqA 264 6.88e+00 1bkpA d.117.1.1 40931 2g8oA 264 6.93e+00 2g8mA 264 7.21e+00 2bhoA 130 7.59e+00 1t6t1 118 7.79e+00 1o6dA 163 8.16e+00 c.116.1.3 92567 1mkmA 249 8.51e+00 a.4.5.33,d.110.2.2 79242,79243 1g57A 217 8.76e+00 1g57A d.115.1.2 60253 2gwnA 452 9.41e+00 2bsjA 133 9.66e+00 1jalA 363 9.91e+00 c.37.1.8,d.15.10.2 84138,84139 1r31A 428 1.01e+01 d.58.20.1,d.179.1.1 96897,96898 1fr3A 67 1.04e+01 1fr3A b.40.6.1 25436 1vcaA 202 1.04e+01 1vcaA b.1.1.3,b.1.1.4 21649,21685 2f69A 261 1.15e+01 1se8A 301 1.22e+01 b.40.4.3 105448 1u9yA 284 1.26e+01 1fjrA 195 1.32e+01 1fjrA b.102.1.1 59855 1zm8A 259 1.35e+01 1gpr 162 1.39e+01 1gpr b.84.3.1 28267 1i6pA 220 1.52e+01 1ddzA c.53.2.1 61848 1dmgA 225 1.54e+01 1dmgA c.22.1.1 31036 2d4pA 141 1.57e+01 1lh0A 213 1.59e+01 c.61.1.1 73896 1dg6A 191 1.64e+01 1d4vB b.22.1.1 23883 2gm5A 139 1.68e+01 1nbwA 607 1.70e+01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 2bikB 313 1.72e+01 1tzfA 259 1.73e+01 c.68.1.13 107476 1vchA 175 1.77e+01 1gjjA 168 1.80e+01 a.140.1.1,a.140.1.1 83291,83292 1r62A 160 1.81e+01 d.122.1.3 104816 1fsgA 233 1.84e+01 1qk3A c.61.1.1 34029 1vj0A 380 1.86e+01 b.35.1.2,c.2.1.1 100786,100787 1h72C 296 1.91e+01 d.14.1.5,d.58.26.1 60712,60713 1vkmA 297 1.92e+01 c.138.1.1 108670 1n6aA 259 1.95e+01 b.76.2.1,b.85.7.1 80121,80122 2b4aA 138 2.00e+01 1o57A 291 2.15e+01 a.4.5.40,c.61.1.1 92483,92484 1qzzA 374 2.21e+01 a.4.5.29,c.66.1.12 96719,96720 1i1wA 303 2.24e+01 c.1.8.3 76732 2bsyA 278 2.32e+01 1w78A 422 2.33e+01 1p42A 270 2.33e+01 d.14.1.7,d.14.1.7 87754,87755 1uh5A 329 2.34e+01 c.2.1.2 107840 1rf6A 427 2.42e+01 d.68.2.2 97366 1y791 680 2.43e+01 1ti6A 875 2.50e+01 b.52.2.2,c.81.1.1 106974,106975 1uc2A 481 2.54e+01 d.261.1.1 99161 1yqfA 203 2.62e+01 1ypvA 313 2.63e+01 2c5qA 240 2.66e+01 1vhxA 150 2.66e+01 c.55.3.8 100712 1l0bA 229 2.73e+01 c.15.1.3,c.15.1.3 73391,73392 1vdmA 153 2.74e+01 2fdiA 211 2.77e+01 2ghpA 292 2.79e+01 1hw7A 255 2.90e+01 1i7fA d.193.1.1 61297 1q1rA 431 2.99e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1uheA 97 3.00e+01 1p0zA 131 3.04e+01 d.110.6.1 93882 1xdnA 277 3.13e+01 2rslA 140 3.13e+01 2rslA c.53.1.1 33345 1rwzA 245 3.22e+01 d.131.1.2,d.131.1.2 98005,98006 2fxqA 264 3.23e+01 1kw4A 89 3.23e+01 a.60.1.2 73077 1xv5A 401 3.25e+01 1a62 130 3.33e+01 1a62 a.140.3.1,b.40.4.5 64708,64709 1zxxA 319 3.35e+01 1ueoA 63 3.38e+01 j.107.1.1 99269 2bw4A 340 3.39e+01 1cq3A 233 3.45e+01 1cq3A b.27.1.1 23923 1jmuB 666 3.46e+01 2b8tA 223 3.48e+01 1bb9 115 3.49e+01 1bb9 b.34.2.1 24554 1zq9A 285 3.58e+01 1koe 172 3.63e+01 1koe d.169.1.5 42448 1hgxA 183 3.80e+01 1tc1A c.61.1.1 34027 1a8y 367 3.80e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1to2I 64 3.89e+01 1iukA 140 3.90e+01 c.2.1.8 83712 1ecfA 504 3.90e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1vheA 373 4.03e+01 b.49.3.1,c.56.5.4 100669,100670 1h65A 270 4.03e+01 c.37.1.8 65640 2anuA 255 4.08e+01 1js8A 394 4.09e+01 a.86.1.1,b.112.1.1 67219,67220 1xtqA 177 4.10e+01 1p7tA 731 4.15e+01 c.1.13.1 94319 2fa1A 160 4.16e+01 1oq1A 223 4.18e+01 b.29.1.17 93408 1eceA 358 4.24e+01 1eceA c.1.8.3 28813 1rurH 218 4.24e+01 b.1.1.1,b.1.1.2 97879,97880 1uylA 236 4.28e+01 d.122.1.1 108147 2f1rA 171 4.47e+01 1u0mA 382 4.49e+01 c.95.1.2,c.95.1.2 107557,107558 1jpaA 312 4.65e+01 d.144.1.7 67011 1xewX 182 4.66e+01 1wtaA 275 4.68e+01 1vkpA 383 4.70e+01 d.126.1.6 108686 1zh5A 195 4.77e+01 1lvoA 302 4.80e+01 b.47.1.4 74284 1t6eX 381 4.81e+01 b.50.1.2 106564 1h70A 255 4.88e+01 1h70A d.126.1.3 60711 1wd5A 208 4.90e+01 1ppo 216 4.93e+01 1cs8A d.3.1.1 37020 1vc3B 97 4.99e+01 1yloA 348 5.07e+01 1ta3B 303 5.18e+01 c.1.8.3 106732 1y7lA 316 5.29e+01 1i52A 236 5.32e+01 1i52A c.68.1.13 61767 1h3gA 601 5.34e+01 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 2cq2A 114 5.40e+01 2aeeA 211 5.46e+01 1yb3A 175 5.54e+01 1p99A 295 5.58e+01 c.94.1.1 94384 1bg4 302 5.63e+01 1taxA c.1.8.3 28806 2d9bA 109 5.72e+01 2brfA 110 5.77e+01 1fp2A 352 5.78e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1deuA 277 5.83e+01 1theB d.3.1.1 37085 1hh1A 143 5.84e+01 1gefA c.52.1.18 61036 1xebA 150 5.90e+01 1xs1A 193 5.91e+01 1x65A 89 5.92e+01 1ym5A 300 5.94e+01 1fit 147 5.97e+01 1fit d.13.1.1 37499 1vybA 238 5.97e+01 d.151.1.1 108897 1vpqA 273 6.00e+01 1ycoA 279 6.09e+01 1earA 147 6.25e+01 b.107.1.1,d.58.38.1 64875,64876 1yz7A 188 6.27e+01 2f6rA 281 6.33e+01 1ppjB 439 6.42e+01 d.185.1.1,d.185.1.1 104254,104255 1u4nA 310 6.51e+01 1tyv 542 6.52e+01 1tyv b.80.1.6 28038 1mj5A 302 6.59e+01 c.69.1.8 91285 1bu6O 501 6.60e+01 1glcG c.55.1.4,c.55.1.4 33499,33500 1g0sA 209 6.62e+01 1g0sA d.113.1.1 60187 1ako 268 6.73e+01 1ako d.151.1.1 41779 2d9iA 96 6.83e+01 2a2pA 129 6.84e+01 2cyjA 118 6.90e+01 1yrrA 382 6.98e+01 1o3yA 166 6.99e+01 c.37.1.8 86618 1h05A 146 7.00e+01 c.23.13.1 76433 1unkA 87 7.01e+01 1cei a.28.2.1 16935 2cdqA 510 7.02e+01 1yy6A 155 7.08e+01 2fojA 155 7.08e+01 1yqgA 263 7.08e+01 1cl1A 395 7.10e+01 1cl2A c.67.1.3 34395 1z4eA 153 7.19e+01 1evhA 112 7.22e+01 1evhA b.55.1.4 26997 1yfqA 342 7.23e+01 1qy5A 269 7.29e+01 d.122.1.1 96573 2ahqA 76 7.43e+01 1rtu 114 7.45e+01 9rnt d.1.1.4 36139 1oi2A 366 7.65e+01 c.119.1.2 103802 1pqhA 143 7.70e+01 b.52.2.1 95017 1rutX 188 7.83e+01 1ugmA 125 8.02e+01 d.15.1.3 107827 1voqa 90 8.07e+01 1gg4A 452 8.07e+01 1gg4A c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1y8oB 128 8.11e+01 1o59A 355 8.18e+01 b.18.1.22,b.18.1.22 92495,92496 2fe7A 166 8.19e+01 1fy7A 278 8.19e+01 1fy7A d.108.1.1 40817 1zp4A 304 8.19e+01 1ny4A 82 8.27e+01 b.40.4.5 92316 1zybA 232 8.35e+01 1ybdA 239 8.35e+01 1v0aA 178 8.43e+01 1zkkA 167 8.49e+01 1sfdA 105 8.56e+01 b.6.1.1 105480 1vraB 215 8.58e+01 1y96A 86 8.74e+01 2etxA 209 8.76e+01 1y9wA 140 8.82e+01 1vr0A 247 8.82e+01 1llnA 262 8.83e+01 d.165.1.1 84625 1lk2B 99 8.85e+01 b.1.1.2 91058 1ni4A 365 8.86e+01 c.36.1.11 85728 1qfgA 725 8.90e+01 1by5A f.4.3.3 43803 1p2fA 220 8.97e+01 a.4.6.1,c.23.1.1 87720,87721 1wexA 104 8.98e+01