# List of top-scoring protein chains for t06-100-30-o_notor2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fneA 117 6.09e-13 2fe5A 94 1.46e-12 1tp5A 119 1.03e-11 2fcfA 103 1.38e-11 1g9oA 91 1.42e-11 1pdr b.36.1.1 60400 1qavA 90 5.88e-11 1qauA b.36.1.1 24777 1n7eA 97 1.27e-10 b.36.1.1 91691 1ihjA 98 1.69e-10 1pdr b.36.1.1 62382 1n7fA 97 2.20e-10 b.36.1.1 91692 1q3oA 109 5.04e-10 b.36.1.1 95700 2h2bA 107 5.29e-10 1qauA 112 1.12e-09 1qauA b.36.1.1 24779 1kwaA 88 1.48e-09 1kwaA b.36.1.1 24772 2h3lA 103 1.56e-09 1mfgA 95 1.68e-09 b.36.1.1 79043 2f0aA 98 1.85e-09 2f5yA 91 1.94e-09 1nf3C 128 2.18e-09 b.36.1.1 85596 1wf7A 103 6.56e-09 1r6jA 82 5.17e-08 b.36.1.1 97151 1fc6A 388 2.36e-05 1fc6A b.36.1.3,c.14.1.2 64738,64739 1lcyA 325 9.50e-05 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 1.84e-04 1y8tA 324 5.37e-03 1zn8A 180 3.18e-02 1qb7A 236 1.36e-01 1qb7A c.61.1.1 34087 1yg9A 330 3.70e-01 1cliA 345 6.95e-01 1cliA d.79.4.1,d.139.1.1 39816,41459 1l1qA 186 7.62e-01 c.61.1.1 77653 1fdr 248 8.29e-01 1fdr b.43.4.2,c.25.1.1 25653,31543 1xx6A 191 9.07e-01 1w78A 422 9.10e-01 1y0bA 197 1.05e+00 2az4A 429 1.26e+00 2g8oA 264 1.53e+00 2g8mA 264 1.58e+00 2anuA 255 1.62e+00 1ecfA 504 1.75e+00 1ecfB c.61.1.1,d.153.1.1 34053,41820 2brfA 110 2.08e+00 1t3qB 788 2.15e+00 d.41.1.1,d.133.1.1 106369,106370 1r62A 160 2.38e+00 d.122.1.3 104816 1qqqA 264 2.58e+00 1bkpA d.117.1.1 40931 1ex7A 186 3.12e+00 1gky c.37.1.1 59537 1x6vA 630 3.14e+00 1gky 187 3.15e+00 1gky c.37.1.1 31839 1mkmA 249 3.55e+00 a.4.5.33,d.110.2.2 79242,79243 2hc1A 291 3.80e+00 2h03A 291 3.80e+00 2fvgA 340 3.96e+00 1u9yA 284 4.15e+00 1fxlA 167 4.18e+00 1b7fA d.58.7.1,d.58.7.1 39183,39184 1wrvA 308 4.23e+00 2bhoA 130 4.37e+00 1a62 130 4.54e+00 1a62 a.140.3.1,b.40.4.5 64708,64709 1dmgA 225 4.59e+00 1dmgA c.22.1.1 31036 2bh8A 101 4.82e+00 1o63A 219 4.87e+00 c.94.1.1 92540 1lh0A 213 4.92e+00 c.61.1.1 73896 1x3mA 415 4.95e+00 1q52A 314 5.30e+00 c.14.1.3 95846 1g7sA 594 5.41e+00 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 1w94A 156 5.48e+00 1h72C 296 5.60e+00 d.14.1.5,d.58.26.1 60712,60713 1a9xA 1058 5.81e+00 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1cs0A 1073 5.83e+00 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1mjhA 162 6.03e+00 1mjhA c.26.2.4 31639 1jhfA 202 6.19e+00 a.4.5.2,b.87.1.1 63057,63058 1xewX 182 6.21e+00 1p99A 295 6.59e+00 c.94.1.1 94384 1h3gA 601 6.90e+00 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1zhvA 134 6.91e+00 1pg4A 652 6.97e+00 e.23.1.1 88067 2b4aA 138 7.00e+00 1ypvA 313 7.10e+00 1o6dA 163 7.11e+00 c.116.1.3 92567 1p7tA 731 7.13e+00 c.1.13.1 94319 2cc0A 195 7.18e+00 1dxrH 258 7.48e+00 6prcH b.41.1.1,f.23.10.1 25456,43433 1bu6O 501 7.72e+00 1glcG c.55.1.4,c.55.1.4 33499,33500 1xnzA 264 7.78e+00 2cw8A 537 7.90e+00 2ggcA 263 7.98e+00 2bsjA 133 8.02e+00 1yemA 179 8.04e+00 1bx4A 345 8.20e+00 1bx4A c.72.1.1 34935 1x8vA 455 8.31e+00 1n0qA 93 8.46e+00 k.37.1.1 79754 1t6t1 118 9.03e+00 1xdnA 277 9.03e+00 2b8tA 223 9.48e+00 1a8l 226 9.69e+00 1a8l c.47.1.2,c.47.1.2 32777,32778 1reqB 637 9.93e+00 1reqB c.1.19.1,c.23.6.1 29621,31248 1vj0A 380 1.03e+01 b.35.1.2,c.2.1.1 100786,100787 1kk1A 410 1.04e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1z90A 469 1.04e+01 1wxxA 382 1.04e+01 1ccwA 137 1.06e+01 1be1 c.23.6.1 31238 1y0yA 353 1.09e+01 1h70A 255 1.09e+01 1h70A d.126.1.3 60711 1g8sA 230 1.11e+01 c.66.1.3 90507 1n6aA 259 1.13e+01 b.76.2.1,b.85.7.1 80121,80122 2f6rA 281 1.22e+01 1uh5A 329 1.22e+01 c.2.1.2 107840 1ti6A 875 1.22e+01 b.52.2.2,c.81.1.1 106974,106975 1sw5A 275 1.23e+01 c.94.1.1 106069 1j24A 143 1.32e+01 c.52.1.20 84008 2bikB 313 1.35e+01 2gwnA 452 1.36e+01 1rwzA 245 1.37e+01 d.131.1.2,d.131.1.2 98005,98006 1se8A 301 1.38e+01 b.40.4.3 105448 1g6sA 427 1.40e+01 1eps d.68.2.2 39584 1uc2A 481 1.41e+01 d.261.1.1 99161 1f20A 435 1.43e+01 b.43.4.1,c.25.1.4 64932,64933 2bb3A 221 1.46e+01 1fm0E 150 1.48e+01 1fmaE d.41.5.1 38629 1i9gA 280 1.49e+01 c.66.1.13 62090 1rypL 212 1.49e+01 d.153.1.4 41880 1llnA 262 1.49e+01 d.165.1.1 84625 1jalA 363 1.51e+01 c.37.1.8,d.15.10.2 84138,84139 2cxaA 256 1.51e+01 1rm6A 769 1.51e+01 2f69A 261 1.52e+01 1yb3A 175 1.53e+01 2d4pA 141 1.54e+01 1vmeA 410 1.55e+01 c.23.5.1,d.157.1.3 108893,108894 1p2fA 220 1.57e+01 a.4.6.1,c.23.1.1 87720,87721 1vqqA 646 1.58e+01 1yqgA 263 1.60e+01 1yz7A 188 1.60e+01 1i52A 236 1.64e+01 1i52A c.68.1.13 61767 1i8fA 81 1.66e+01 1i8fA b.38.1.1 61959 2iu4A 336 1.67e+01 1kw4A 89 1.68e+01 a.60.1.2 73077 1yf3A 259 1.69e+01 1y96A 86 1.70e+01 2b3hA 329 1.70e+01 1yqfA 203 1.71e+01 1cq3A 233 1.71e+01 1cq3A b.27.1.1 23923 1sdjA 310 1.71e+01 d.21.1.2,d.21.1.2 98807,98808 1pk1B 89 1.72e+01 2erfA 209 1.72e+01 2apr 325 1.72e+01 2er7E b.50.1.2 26819 1s29A 92 1.73e+01 a.4.5.46 98373 2bsyA 278 1.80e+01 2h0uA 217 1.80e+01 1yloA 348 1.83e+01 1h8eA 510 1.83e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1ci9A 392 1.83e+01 e.3.1.1 64767 2csbA 519 1.88e+01 1mvoA 136 1.90e+01 c.23.1.1 79513 1km4A 247 1.91e+01 c.1.2.3 72740 1js8A 394 1.91e+01 a.86.1.1,b.112.1.1 67219,67220 1ojhA 65 1.94e+01 a.214.1.1 103976 1gjjA 168 1.94e+01 a.140.1.1,a.140.1.1 83291,83292 1yllA 200 1.96e+01 1bouA 139 2.03e+01 1bouA a.88.1.1 18521 1umzA 278 2.05e+01 b.29.1.2 99639 1gpjA 404 2.06e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2bw3A 534 2.11e+01 1oktA 211 2.11e+01 a.45.1.1,c.47.1.5 93272,93273 1nkqA 259 2.13e+01 d.177.1.1 103862 1at0 145 2.16e+01 1at0 b.86.1.1 28374 1rxdA 159 2.18e+01 1kgdA 180 2.20e+01 c.37.1.1 68582 1d7oA 297 2.20e+01 1enp c.2.1.2 29907 1koe 172 2.20e+01 1koe d.169.1.5 42448 1vheA 373 2.23e+01 b.49.3.1,c.56.5.4 100669,100670 1bb9 115 2.27e+01 1bb9 b.34.2.1 24554 1io1A 398 2.28e+01 1io1A e.32.1.1 62611 1z3eA 132 2.29e+01 1oalA 151 2.29e+01 b.1.8.1 86739 1sflA 238 2.33e+01 2ck3A 510 2.33e+01 1o65A 246 2.37e+01 b.58.1.2 92544 1m65A 245 2.38e+01 c.6.3.1 84847 2c0rA 362 2.42e+01 1ok7A 366 2.46e+01 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 2cyjA 118 2.51e+01 1g57A 217 2.53e+01 1g57A d.115.1.2 60253 1w9gA 104 2.53e+01 1zrjA 50 2.53e+01 1eswA 500 2.53e+01 1cwyA c.1.8.1 59500 1ex2A 189 2.54e+01 1ex2A c.51.4.2 33225 1g2qA 187 2.54e+01 c.61.1.1 65117 1mzbA 136 2.54e+01 a.4.5.42 91497 1oaqL 120 2.54e+01 b.1.1.1 92708 1r0vA 305 2.59e+01 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 1a8y 367 2.61e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1rutX 188 2.61e+01 1qyaA 307 2.62e+01 d.21.1.2,d.21.1.2 104653,104654 2fvtA 135 2.63e+01 1m5wA 243 2.66e+01 c.1.24.1 84836 1npuA 117 2.66e+01 b.1.1.1 92038 2fojA 155 2.71e+01 1xv5A 401 2.72e+01 2fdiA 211 2.88e+01 2glfA 450 2.89e+01 1zpwX 90 2.90e+01 2f51A 118 2.91e+01 1ys7A 233 2.91e+01 1rd5A 262 2.94e+01 1yy6A 155 2.94e+01 1o97D 320 2.95e+01 c.26.2.3,c.31.1.2 81233,81234 1cruA 454 2.99e+01 1c9uA b.68.2.1 27617 1u5kA 244 3.00e+01 1f7uA 607 3.02e+01 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1vybA 238 3.03e+01 d.151.1.1 108897 2amhA 207 3.04e+01 2aawA 222 3.05e+01 1sknP 92 3.05e+01 1sknP a.37.1.1 17127 1vzoA 355 3.05e+01 d.144.1.7 108971 1sfdA 105 3.06e+01 b.6.1.1 105480 1epwA 1290 3.09e+01 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1vkmA 297 3.10e+01 c.138.1.1 108670 1vlrA 350 3.10e+01 d.13.1.3,d.246.1.1 108860,108861 2gm5A 139 3.14e+01 2c8vA 288 3.14e+01 1u2cA 246 3.15e+01 b.1.6.2,d.272.1.1 107610,107611 1yhfA 115 3.16e+01 1vbkA 307 3.16e+01 1z5yE 149 3.18e+01 1uteA 313 3.21e+01 1uteA d.159.1.1 42078 1tzfA 259 3.25e+01 c.68.1.13 107476 1iz5A 249 3.28e+01 d.131.1.2,d.131.1.2 83834,83835 1v7lA 163 3.32e+01 1vpjA 192 3.33e+01 1h9oA 112 3.33e+01 1qadA d.93.1.1 60837 1i6pA 220 3.34e+01 1ddzA c.53.2.1 61848 1z5zA 271 3.35e+01 1v2xA 194 3.36e+01 c.116.1.1 100274 1iukA 140 3.36e+01 c.2.1.8 83712 1b25A 619 3.36e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1ctf 74 3.37e+01 1ctf d.45.1.1 38759 1p42A 270 3.43e+01 d.14.1.7,d.14.1.7 87754,87755 1hw6A 278 3.50e+01 1frb c.1.7.1 61296 2covD 104 3.51e+01 1hh1A 143 3.55e+01 1gefA c.52.1.18 61036 1nnhA 294 3.56e+01 d.104.1.1 92005 1pzxA 289 3.57e+01 c.119.1.1 95484 1vk4A 298 3.58e+01 c.72.1.1 100850 2a9iA 113 3.59e+01 1wy2A 351 3.60e+01 1xv2A 237 3.61e+01 1fhgA 154 3.62e+01 1tlk b.1.1.4 21706 2a2pA 129 3.63e+01 1wwpA 119 3.63e+01 1bh9B 89 3.66e+01 1bh9B a.22.1.3 16485 1yvcA 70 3.70e+01 1q1rA 431 3.75e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1wvhA 134 3.75e+01 2bneA 241 3.75e+01 1eexA 554 3.75e+01 1dioA c.1.19.3 29650 1poiA 317 3.75e+01 1poiA c.124.1.2 34153 1vchA 175 3.83e+01 2f9dA 125 3.84e+01 1jdpA 441 3.88e+01 c.93.1.1 62906 1z96A 40 3.90e+01 1vjkA 98 3.93e+01 d.15.3.1 108631 1fehA 574 3.93e+01 1fehA c.96.1.1,d.15.4.2,d.58.1.5 36015,37690,38998 1sw5B 275 3.94e+01 c.94.1.1 106070 2bs3A 656 3.95e+01 2d8aA 348 4.02e+01 2bgiA 272 4.07e+01 2cveA 191 4.09e+01 1yzyA 413 4.17e+01 1nnwA 252 4.18e+01 d.159.1.5 80674 2ckiA 262 4.19e+01 1l0bA 229 4.20e+01 c.15.1.3,c.15.1.3 73391,73392 1vdmA 153 4.22e+01 1ueoA 63 4.24e+01 j.107.1.1 99269 2ahqA 76 4.24e+01 1mhqA 148 4.29e+01 a.118.9.2 84973 3psg 370 4.30e+01 1smrA b.50.1.2 26841 1e4mM 501 4.36e+01 1e70M c.1.8.4 59226 2c1lA 358 4.38e+01 2ghpA 292 4.39e+01 1rtu 114 4.39e+01 9rnt d.1.1.4 36139 1zhaA 267 4.43e+01 1eceA 358 4.43e+01 1eceA c.1.8.3 28813 1gpr 162 4.44e+01 1gpr b.84.3.1 28267 1t6eX 381 4.44e+01 b.50.1.2 106564 1y1pA 342 4.46e+01 1p2hA 571 4.47e+01 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1h8eH 146 4.50e+01 1e79H b.93.1.1 60757 1zavU 30 4.53e+01 2a7mA 250 4.56e+01 1jnyA 435 4.64e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1tmy 120 4.67e+01 1dbwA c.23.1.1 31083 1cg2A 393 4.71e+01 1cg2A c.56.5.4,d.58.19.1 33844,39360 1aohA 147 4.72e+01 1aohA b.2.2.2 22401 1l3iA 192 4.76e+01 c.66.1.22 77676 1ww7A 160 4.77e+01 1xvqA 175 4.77e+01 1lk2B 99 4.78e+01 b.1.1.2 91058 2c9wA 169 4.80e+01 1ujkA 147 4.80e+01 a.118.9.2 99457 1txdA 385 4.81e+01 a.87.1.1,b.55.1.1 107422,107423 1d4oA 184 4.82e+01 1d4oA c.31.1.4 31748 2b8eA 273 4.84e+01 1o4rA 108 4.86e+01 d.93.1.1 92469 1vlbA 907 4.88e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1j3wA 163 4.92e+01 d.110.7.1 90833 1lngA 87 4.92e+01 d.201.1.1 74045 1avaC 181 4.94e+01 1avaC b.42.4.1 25604 1wdiA 345 4.95e+01 1gg4A 452 4.95e+01 1gg4A c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1vraA 208 4.95e+01 1vkfA 188 4.98e+01 c.1.29.1 108656 1vhqA 232 4.99e+01 c.23.16.2 100696 1rk6A 496 5.03e+01 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1wlsA 328 5.04e+01 1bqcA 302 5.07e+01 1bqcA c.1.8.3 28831 1h65A 270 5.10e+01 c.37.1.8 65640 1cc8A 73 5.10e+01 1cc8A d.58.17.1 39343 2fe7A 166 5.10e+01 1jysA 242 5.11e+01 c.56.2.1 77216 1fxkC 133 5.11e+01 1fxkC a.2.5.1 15702 1xd8A 289 5.12e+01 1bxvA 91 5.12e+01 1aac b.6.1.1 22875 1kuuA 202 5.14e+01 d.153.2.1 73019 1ub3A 220 5.15e+01 c.1.10.1 88395 2eveA 157 5.18e+01 1t15A 214 5.19e+01 c.15.1.3,c.15.1.3 99067,99068 1qwrA 319 5.20e+01 b.82.1.3 96491 1l2mA 118 5.20e+01 d.89.1.4 77657 1dq3A 454 5.21e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1shxA 138 5.25e+01 1fs0E 138 5.27e+01 1aqt a.2.10.1,b.93.1.1 59997,59998 1ppjB 439 5.27e+01 d.185.1.1,d.185.1.1 104254,104255 1j58A 385 5.29e+01 b.82.1.2 71531 1ppo 216 5.30e+01 1cs8A d.3.1.1 37020 1o59A 355 5.32e+01 b.18.1.22,b.18.1.22 92495,92496 1id2A 106 5.33e+01 1aac b.6.1.1 62288 1l1dA 152 5.33e+01 b.88.1.3 73452 1gs5A 258 5.34e+01 c.73.1.2 70395 1euwA 152 5.36e+01 1dupA b.85.4.1 28349 1ze3H 122 5.38e+01 1earA 147 5.43e+01 b.107.1.1,d.58.38.1 64875,64876 1rurH 218 5.44e+01 b.1.1.1,b.1.1.2 97879,97880 1o0sA 605 5.47e+01 c.2.1.7,c.58.1.3 86540,86541 1u0mA 382 5.47e+01 c.95.1.2,c.95.1.2 107557,107558 1x1zA 252 5.47e+01 2rslA 140 5.48e+01 2rslA c.53.1.1 33345 1f28A 297 5.49e+01 1bkpA d.117.1.1 59608 2bwbA 46 5.52e+01 1tksA 204 5.55e+01 d.115.1.2 107114 1augA 215 5.58e+01 1a2zA c.56.4.1 33798 1rlyA 60 5.65e+01 g.41.3.1 104988 1umdA 367 5.67e+01 c.36.1.11 99599 1odkA 235 5.67e+01 c.56.2.1 86863 1rlhA 173 5.68e+01 d.256.1.1 97646 1zq9A 285 5.68e+01 2fuqA 747 5.73e+01 1tygB 87 5.80e+01 d.15.3.2 107455 1uqvA 85 5.89e+01 a.60.1.2 99798 1xezA 721 5.89e+01 1y7lA 316 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