# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fe5A 94 1.16e-17 1g9oA 91 3.09e-17 1pdr b.36.1.1 60400 1tp5A 119 1.07e-16 2fcfA 103 1.14e-16 2fneA 117 1.32e-16 1qavA 90 6.27e-16 1qauA b.36.1.1 24777 1n7eA 97 3.20e-15 b.36.1.1 91691 1q3oA 109 3.86e-15 b.36.1.1 95700 1n7fA 97 4.87e-15 b.36.1.1 91692 1ihjA 98 5.20e-15 1pdr b.36.1.1 62382 2h2bA 107 1.08e-14 1kwaA 88 4.77e-14 1kwaA b.36.1.1 24772 2f0aA 98 8.30e-14 1nf3C 128 1.31e-13 b.36.1.1 85596 1qauA 112 1.43e-13 1qauA b.36.1.1 24779 1mfgA 95 1.61e-13 b.36.1.1 79043 2h3lA 103 1.78e-13 2f5yA 91 2.61e-13 1wf7A 103 3.48e-13 1r6jA 82 1.54e-11 b.36.1.1 97151 1fc6A 388 2.14e-08 1fc6A b.36.1.3,c.14.1.2 64738,64739 1lcyA 325 4.57e-07 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 7.61e-07 1y8tA 324 8.22e-06 1zn8A 180 9.52e-03 1qb7A 236 2.86e-02 1qb7A c.61.1.1 34087 1fxlA 167 2.01e-01 1b7fA d.58.7.1,d.58.7.1 39183,39184 1yg9A 330 3.33e-01 1g2qA 187 4.61e-01 c.61.1.1 65117 1q52A 314 6.93e-01 c.14.1.3 95846 1o6dA 163 9.42e-01 c.116.1.3 92567 1t6t1 118 9.91e-01 1xx6A 191 1.09e+00 1bx4A 345 1.18e+00 1bx4A c.72.1.1 34935 1se8A 301 1.52e+00 b.40.4.3 105448 1y0bA 197 2.06e+00 1cliA 345 2.07e+00 1cliA d.79.4.1,d.139.1.1 39816,41459 1fdr 248 2.13e+00 1fdr b.43.4.2,c.25.1.1 25653,31543 1n6aA 259 2.20e+00 b.76.2.1,b.85.7.1 80121,80122 2fvgA 340 2.49e+00 1x3mA 415 2.63e+00 2f69A 261 2.90e+00 1l1qA 186 3.19e+00 c.61.1.1 77653 1fr3A 67 3.39e+00 1fr3A b.40.6.1 25436 1h72C 296 3.88e+00 d.14.1.5,d.58.26.1 60712,60713 1lh0A 213 4.07e+00 c.61.1.1 73896 1mkmA 249 4.33e+00 a.4.5.33,d.110.2.2 79242,79243 2f9dA 125 4.83e+00 1fm0E 150 4.98e+00 1fmaE d.41.5.1 38629 1ti6A 875 5.38e+00 b.52.2.2,c.81.1.1 106974,106975 2bw3A 534 5.48e+00 1vchA 175 5.49e+00 1zh5A 195 6.01e+00 1uc2A 481 6.62e+00 d.261.1.1 99161 1h3gA 601 6.79e+00 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1a8y 367 6.87e+00 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 2brfA 110 6.90e+00 1l0bA 229 6.94e+00 c.15.1.3,c.15.1.3 73391,73392 2bh8A 101 7.00e+00 1ecfA 504 7.76e+00 1ecfB c.61.1.1,d.153.1.1 34053,41820 2b8tA 223 8.00e+00 1cq3A 233 8.47e+00 1cq3A b.27.1.1 23923 2bsyA 278 8.61e+00 2gm5A 139 8.79e+00 2c5qA 240 8.79e+00 1gpr 162 9.46e+00 1gpr b.84.3.1 28267 1r62A 160 9.48e+00 d.122.1.3 104816 1rutX 188 9.50e+00 1vheA 373 9.71e+00 b.49.3.1,c.56.5.4 100669,100670 1r31A 428 9.77e+00 d.58.20.1,d.179.1.1 96897,96898 1g57A 217 9.93e+00 1g57A d.115.1.2 60253 2d4pA 141 1.00e+01 1vkmA 297 1.05e+01 c.138.1.1 108670 1w94A 156 1.05e+01 1i1wA 303 1.08e+01 c.1.8.3 76732 2bhoA 130 1.10e+01 1kw4A 89 1.13e+01 a.60.1.2 73077 1f20A 435 1.14e+01 b.43.4.1,c.25.1.4 64932,64933 2bsjA 133 1.15e+01 1zkkA 167 1.15e+01 1dmgA 225 1.22e+01 1dmgA c.22.1.1 31036 2cu5A 129 1.30e+01 1u9yA 284 1.30e+01 1vhxA 150 1.31e+01 c.55.3.8 100712 1fsgA 233 1.31e+01 1qk3A c.61.1.1 34029 2g8oA 264 1.33e+01 1qqqA 264 1.34e+01 1bkpA d.117.1.1 40931 1yqfA 203 1.34e+01 2g8mA 264 1.39e+01 1a62 130 1.39e+01 1a62 a.140.3.1,b.40.4.5 64708,64709 2iu4A 336 1.43e+01 1hzdA 272 1.43e+01 c.14.1.3 65969 2aamA 309 1.46e+01 1vj0A 380 1.51e+01 b.35.1.2,c.2.1.1 100786,100787 1wlsA 328 1.52e+01 1poiA 317 1.57e+01 1poiA c.124.1.2 34153 1vdmA 153 1.57e+01 1vraB 215 1.62e+01 1ta3B 303 1.69e+01 c.1.8.3 106732 1xdnA 277 1.73e+01 1qzzA 374 1.79e+01 a.4.5.29,c.66.1.12 96719,96720 1rwzA 245 1.81e+01 d.131.1.2,d.131.1.2 98005,98006 2az4A 429 1.84e+01 2cq2A 114 1.86e+01 2b4aA 138 1.88e+01 1cl1A 395 1.90e+01 1cl2A c.67.1.3 34395 2ghpA 292 1.93e+01 1dg6A 191 1.94e+01 1d4vB b.22.1.1 23883 1bg4 302 1.95e+01 1taxA c.1.8.3 28806 1yloA 348 2.01e+01 1o57A 291 2.01e+01 a.4.5.40,c.61.1.1 92483,92484 2ptd 298 2.10e+01 2plc c.1.18.2 29605 1uh5A 329 2.12e+01 c.2.1.2 107840 2cw8A 537 2.12e+01 1ypvA 313 2.21e+01 1hw7A 255 2.22e+01 1i7fA d.193.1.1 61297 1sfdA 105 2.26e+01 b.6.1.1 105480 1vcaA 202 2.28e+01 1vcaA b.1.1.3,b.1.1.4 21649,21685 1ugmA 125 2.28e+01 d.15.1.3 107827 2a6hC 1119 2.29e+01 1hgxA 183 2.30e+01 1tc1A c.61.1.1 34027 1o63A 219 2.34e+01 c.94.1.1 92540 1xm7A 195 2.36e+01 1zq9A 285 2.36e+01 2f4wA 187 2.36e+01 1wrvA 308 2.39e+01 1t9fA 187 2.40e+01 b.42.6.1 106710 1xxqA 161 2.40e+01 1y0yA 353 2.45e+01 1y7lA 316 2.50e+01 1q3iA 214 2.53e+01 d.220.1.1 104524 1sv6A 269 2.56e+01 d.177.1.1 106043 1wxxA 382 2.62e+01 1jmuB 666 2.71e+01 1wvhA 134 2.76e+01 1eceA 358 2.80e+01 1eceA c.1.8.3 28813 1koe 172 2.83e+01 1koe d.169.1.5 42448 2fxqA 264 2.87e+01 1oi7A 288 2.94e+01 c.2.1.8,c.23.4.1 87049,87050 1dekA 241 2.96e+01 1dekA c.37.1.1 31842 2fa1A 160 3.03e+01 1g7sA 594 3.03e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 1g6sA 427 3.07e+01 1eps d.68.2.2 39584 1h65A 270 3.08e+01 c.37.1.8 65640 2f51A 118 3.14e+01 1s29A 92 3.16e+01 a.4.5.46 98373 1tzfA 259 3.20e+01 c.68.1.13 107476 1m65A 245 3.25e+01 c.6.3.1 84847 1bb9 115 3.27e+01 1bb9 b.34.2.1 24554 2c1lA 358 3.34e+01 1rypH 205 3.41e+01 d.153.1.4 41876 1zm8A 259 3.47e+01 1vqqA 646 3.50e+01 1wexA 104 3.51e+01 1jalA 363 3.51e+01 c.37.1.8,d.15.10.2 84138,84139 2fe7A 166 3.54e+01 1vpqA 273 3.54e+01 1zkpA 268 3.56e+01 1wd5A 208 3.57e+01 1w78A 422 3.65e+01 1to2I 64 3.73e+01 1u09A 476 3.74e+01 e.8.1.4 107545 2rslA 140 3.84e+01 2rslA c.53.1.1 33345 1l1dA 152 3.90e+01 b.88.1.3 73452 1id2A 106 3.91e+01 1aac b.6.1.1 62288 1xv5A 401 3.94e+01 2anuA 255 3.98e+01 1hh1A 143 3.99e+01 1gefA c.52.1.18 61036 1y791 680 4.02e+01 2f6rA 281 4.02e+01 1mjhA 162 4.06e+01 1mjhA c.26.2.4 31639 2bkfA 87 4.07e+01 2ckiA 262 4.08e+01 1ako 268 4.14e+01 1ako d.151.1.1 41779 1lvoA 302 4.15e+01 b.47.1.4 74284 1xebA 150 4.15e+01 1yb3A 175 4.35e+01 1sw5A 275 4.45e+01 c.94.1.1 106069 1cozA 129 4.47e+01 1cozA c.26.1.2 31598 2apr 325 4.48e+01 2er7E b.50.1.2 26819 1c9oA 66 4.48e+01 1mjc b.40.4.5 25325 1yz7A 188 4.51e+01 1pk6A 133 4.52e+01 b.22.1.1 94801 1ycoA 279 4.61e+01 1yemA 179 4.62e+01 1u0mA 382 4.65e+01 c.95.1.2,c.95.1.2 107557,107558 1ym5A 300 4.65e+01 1zdnA 158 4.68e+01 1g8aA 227 4.71e+01 c.66.1.3 90506 1t44G 147 4.76e+01 d.109.1.1 106395 1yy6A 155 4.77e+01 2cyjA 118 4.79e+01 1rlhA 173 4.79e+01 d.256.1.1 97646 1jhfA 202 4.81e+01 a.4.5.2,b.87.1.1 63057,63058 1wlfA 179 4.86e+01 b.52.2.3,d.31.1.1 109396,109397 1htrB 329 4.93e+01 1smrA 2gwnA 452 4.96e+01 2bgiA 272 5.00e+01 1rypL 212 5.04e+01 d.153.1.4 41880 1p7tA 731 5.04e+01 c.1.13.1 94319 1x8vA 455 5.04e+01 1nthA 458 5.05e+01 c.1.25.1 80730 1wl4A 397 5.07e+01 1ef8A 261 5.07e+01 1ef8A c.14.1.3 30921 1w9gA 104 5.10e+01 1z90A 469 5.28e+01 1h70A 255 5.30e+01 1h70A d.126.1.3 60711 1ojhA 65 5.31e+01 a.214.1.1 103976 2cxaA 256 5.39e+01 2fojA 155 5.39e+01 1eexA 554 5.49e+01 1dioA c.1.19.3 29650 1n0qA 93 5.51e+01 k.37.1.1 79754 1odkA 235 5.52e+01 c.56.2.1 86863 1js8A 394 5.59e+01 a.86.1.1,b.112.1.1 67219,67220 2ahqA 76 5.68e+01 1p42A 270 5.69e+01 d.14.1.7,d.14.1.7 87754,87755 1d4xG 126 5.74e+01 1d0nA d.109.1.1 59109 1y96A 86 5.75e+01 1r7lA 110 5.79e+01 d.277.1.1 104837 2bs3A 656 5.79e+01 1p99A 295 5.88e+01 c.94.1.1 94384 1j24A 143 5.89e+01 c.52.1.20 84008 2fb5A 205 5.95e+01 1mqiA 263 5.96e+01 c.94.1.1 91398 1zsyA 357 6.00e+01 2bb3A 221 6.05e+01 2fnjA 226 6.09e+01 2abwA 227 6.25e+01 1g2bA 62 6.31e+01 1tud b.34.2.1 24488 1gg4A 452 6.36e+01 1gg4A c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1fjrA 195 6.37e+01 1fjrA b.102.1.1 59855 1d4oA 184 6.45e+01 1d4oA c.31.1.4 31748 1oq1A 223 6.47e+01 b.29.1.17 93408 1cs1A 386 6.58e+01 1ibjA c.67.1.3 34399 2aefA 234 6.61e+01 1g2hA 61 6.67e+01 1g2hA a.4.1.12 60224 1euwA 152 6.75e+01 1dupA b.85.4.1 28349 1ppo 216 6.77e+01 1cs8A d.3.1.1 37020 1wkvA 389 6.79e+01 1x65A 89 6.80e+01 1u7eB 154 6.81e+01 1o50A 157 6.83e+01 d.37.1.1,d.37.1.1 92478,92479 1h9oA 112 6.87e+01 1qadA d.93.1.1 60837 1sflA 238 6.87e+01 1lvaA 258 6.89e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1wtaA 275 6.92e+01 1b0uA 262 7.06e+01 1b0uA c.37.1.12 32370 1bxvA 91 7.09e+01 1aac b.6.1.1 22875 2f6uA 234 7.12e+01 1jnyA 435 7.13e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1rxdA 159 7.14e+01 1ep3B 262 7.17e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 1kmvA 186 7.27e+01 c.71.1.1 72757 1iukA 140 7.36e+01 c.2.1.8 83712 1x6vA 630 7.49e+01 1fxkC 133 7.49e+01 1fxkC a.2.5.1 15702 1i52A 236 7.56e+01 1i52A c.68.1.13 61767 1fit 147 7.60e+01 1fit d.13.1.1 37499 1hrkA 359 7.62e+01 1hrkA c.92.1.1 61228 1behA 187 7.65e+01 1a44 b.17.1.1 23700 1zxxA 319 7.65e+01 1a53 247 7.71e+01 1a53 c.1.2.4 28564 2fuqA 747 7.74e+01 1p0zA 131 7.75e+01 d.110.6.1 93882 1v1aA 309 7.81e+01 c.72.1.1 100249 1y8oB 128 7.87e+01 1npuA 117 7.88e+01 b.1.1.1 92038 1v84A 253 7.92e+01 c.68.1.7 108419 1i8kB 124 7.96e+01 b.1.1.1 71131 1eyqA 222 7.98e+01 1eypA d.36.1.1 38534 2d8aA 348 8.10e+01 1vc3B 97 8.11e+01 1yua 122 8.19e+01 1yua g.41.3.3,g.41.3.3 45210,45211 1zrjA 50 8.21e+01 1uheA 97 8.27e+01 1unkA 87 8.34e+01 1cei a.28.2.1 16935 2cokA 113 8.40e+01 1lkkA 105 8.41e+01 1lckA d.93.1.1 40412 1bouA 139 8.47e+01 1bouA a.88.1.1 18521 1b25A 619 8.52e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1iieA 75 8.53e+01 1iieA a.109.1.1 19039 1u2cA 246 8.56e+01 b.1.6.2,d.272.1.1 107610,107611 1mi3A 322 8.56e+01 c.1.7.1 91274 1z96A 40 8.57e+01 2gs8A 317 8.57e+01 1q1rA 431 8.62e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1jv1A 505 8.66e+01 c.68.1.5 71892 1zccA 248 8.75e+01 1l2mA 118 8.81e+01 d.89.1.4 77657 2d9iA 96 8.84e+01 1e7uA 961 8.85e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1p2fA 220 8.90e+01 a.4.6.1,c.23.1.1 87720,87721 1iscA 192 8.91e+01 1avmA a.2.11.1,d.44.1.1 15733,38726 1zybA 232 8.95e+01