# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fneA 117 2.40e-16 2fe5A 94 1.66e-15 1tp5A 119 7.59e-15 1g9oA 91 4.09e-14 1pdr b.36.1.1 60400 2fcfA 103 4.94e-14 1qavA 90 2.08e-13 1qauA b.36.1.1 24777 1ihjA 98 2.26e-13 1pdr b.36.1.1 62382 1n7eA 97 6.42e-13 b.36.1.1 91691 2h2bA 107 1.06e-12 1q3oA 109 1.79e-12 b.36.1.1 95700 2f0aA 98 3.39e-12 2h3lA 103 3.96e-12 1n7fA 97 4.55e-12 b.36.1.1 91692 1mfgA 95 7.46e-12 b.36.1.1 79043 1qauA 112 1.10e-11 1qauA b.36.1.1 24779 1wf7A 103 1.24e-11 1nf3C 128 1.80e-11 b.36.1.1 85596 2f5yA 91 8.41e-11 1kwaA 88 1.46e-10 1kwaA b.36.1.1 24772 1r6jA 82 1.73e-08 b.36.1.1 97151 1fc6A 388 5.44e-06 1fc6A b.36.1.3,c.14.1.2 64738,64739 1lcyA 325 5.78e-06 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 3.61e-05 1y8tA 324 7.39e-02 2bh4X 134 3.10e-01 1fxlA 167 8.75e-01 1b7fA d.58.7.1,d.58.7.1 39183,39184 2a6tA 271 1.17e+00 1jhfA 202 1.79e+00 a.4.5.2,b.87.1.1 63057,63058 1x6vA 630 1.91e+00 1sw5A 275 3.77e+00 c.94.1.1 106069 1yqfA 203 6.20e+00 1bx4A 345 6.46e+00 1bx4A c.72.1.1 34935 1p99A 295 6.56e+00 c.94.1.1 94384 1p35A 299 6.84e+00 1p35A b.28.1.1 23925 1cruA 454 6.95e+00 1c9uA b.68.2.1 27617 1sw5B 275 7.71e+00 c.94.1.1 106070 1koe 172 7.81e+00 1koe d.169.1.5 42448 1t3qB 788 8.55e+00 d.41.1.1,d.133.1.1 106369,106370 1dg6A 191 8.73e+00 1d4vB b.22.1.1 23883 2bikB 313 8.80e+00 1rm6A 769 9.43e+00 1rwzA 245 9.55e+00 d.131.1.2,d.131.1.2 98005,98006 2brfA 110 1.05e+01 1o63A 219 1.05e+01 c.94.1.1 92540 1j24A 143 1.07e+01 c.52.1.20 84008 1xbbA 291 1.07e+01 1xo5A 183 1.21e+01 1h3qA 140 1.24e+01 d.110.4.3 76652 1nlqA 108 1.34e+01 b.121.3.1 85853 1xdyA 298 1.44e+01 1yvcA 70 1.45e+01 2axcA 264 1.55e+01 1se8A 301 1.58e+01 b.40.4.3 105448 1vpqA 273 1.66e+01 2h03A 291 1.71e+01 1euwA 152 1.73e+01 1dupA b.85.4.1 28349 1jjtA 228 1.75e+01 1a7tA d.157.1.1 63139 1xrsA 516 1.86e+01 1s29A 92 1.89e+01 a.4.5.46 98373 1xewY 172 2.02e+01 1zhvA 134 2.05e+01 1qo0D 196 2.13e+01 1qo0D c.23.1.3 31125 2b4aA 138 2.15e+01 1qyaA 307 2.22e+01 d.21.1.2,d.21.1.2 104653,104654 1h9oA 112 2.24e+01 1qadA d.93.1.1 60837 1wvqA 167 2.25e+01 2d4pA 141 2.30e+01 1kw4A 89 2.33e+01 a.60.1.2 73077 1nu4A 97 2.35e+01 d.58.7.1 80731 1r62A 160 2.39e+01 d.122.1.3 104816 1rlhA 173 2.42e+01 d.256.1.1 97646 1xebA 150 2.43e+01 1pueE 89 2.45e+01 1awcA a.4.5.21 16165 1ctqA 166 2.52e+01 1ctqA c.37.1.8 31965 2evwX 166 2.58e+01 1nz0A 118 2.69e+01 d.14.1.2 86433 1z1dA 103 2.71e+01 2bsjA 133 2.72e+01 1tz9A 367 2.74e+01 c.1.15.6 107466 1qb7A 236 2.80e+01 1qb7A c.61.1.1 34087 1sixA 174 2.80e+01 b.85.4.1 98892 1r6xA 395 2.91e+01 b.122.1.3,c.26.1.5 97167,97168 1l1dA 152 2.96e+01 b.88.1.3 73452 1b43A 340 3.02e+01 1a76 a.60.7.1,c.120.1.2 18092,33362 2aa4A 289 3.02e+01 1vlrA 350 3.04e+01 d.13.1.3,d.246.1.1 108860,108861 1reqB 637 3.04e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1nvmA 345 3.05e+01 a.5.7.1,c.1.10.5 86249,86250 1wqsA 173 3.06e+01 1a8l 226 3.09e+01 1a8l c.47.1.2,c.47.1.2 32777,32778 1to2I 64 3.10e+01 2ghpA 292 3.14e+01 2bhoA 130 3.15e+01 1ql3A 99 3.28e+01 1ycc a.3.1.1 15822 1eo6A 117 3.29e+01 1eo6A d.15.1.3 37609 1a8y 367 3.38e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1kgsA 225 3.38e+01 a.4.6.1,c.23.1.1 68596,68597 1unkA 87 3.44e+01 1cei a.28.2.1 16935 3c2c 112 3.46e+01 1ycc a.3.1.1 15885 2c5qA 240 3.52e+01 1xe0A 114 3.58e+01 1sdjA 310 3.63e+01 d.21.1.2,d.21.1.2 98807,98808 1z4eA 153 3.64e+01 1inp 400 3.69e+01 1inp e.7.1.1 42972 2covD 104 3.72e+01 1iz5A 249 3.92e+01 d.131.1.2,d.131.1.2 83834,83835 2hc1A 291 3.92e+01 1wvhA 134 3.96e+01 1l3iA 192 4.12e+01 c.66.1.22 77676 1r61A 207 4.13e+01 c.8.8.1 97138 1gky 187 4.49e+01 1gky c.37.1.1 31839 2fojA 155 4.59e+01 1th7A 81 4.60e+01 1rurH 218 4.64e+01 b.1.1.1,b.1.1.2 97879,97880 1rz2A 254 4.66e+01 b.100.1.1 105130 1yy6A 155 4.66e+01 2cc0A 195 4.88e+01 1gnuA 117 5.17e+01 d.15.1.3 65403 1ww7A 160 5.20e+01 1y7rA 133 5.26e+01 1v66A 65 5.32e+01 1rxwA 336 5.45e+01 a.60.7.1,c.120.1.2 98059,98060 1yoeA 322 5.51e+01 1dpe 507 5.55e+01 1dpe c.94.1.1 35799 2fe7A 166 5.57e+01 1qhlA 227 5.65e+01 1qhlA c.37.1.12 32382 1xv5A 401 5.69e+01 1uyjA 296 5.69e+01 f.8.1.2 108143 1ex7A 186 5.72e+01 1gky c.37.1.1 59537 1g8sA 230 5.79e+01 c.66.1.3 90507 1rxdA 159 5.79e+01 1ti6A 875 5.80e+01 b.52.2.2,c.81.1.1 106974,106975 1yi9A 309 6.05e+01 1wdiA 345 6.26e+01 1vs0A 310 6.27e+01 1evlA 401 6.41e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 2etxA 209 6.46e+01 1s6cA 183 6.52e+01 a.39.1.5 98594 1zkkA 167 6.53e+01 1pk1B 89 6.60e+01 1gpr 162 6.61e+01 1gpr b.84.3.1 28267 2cu5A 129 6.71e+01 1rypL 212 6.72e+01 d.153.1.4 41880 1earA 147 6.74e+01 b.107.1.1,d.58.38.1 64875,64876 2bw3A 534 6.75e+01 1wolA 122 6.82e+01 1rss 151 6.85e+01 1rss a.75.1.1 18392 1knb 196 7.04e+01 1qhvA b.21.1.1 23841 1mk4A 157 7.05e+01 d.108.1.1 84979 2rslA 140 7.37e+01 2rslA c.53.1.1 33345 1fpzA 212 7.45e+01 1fpzA c.45.1.1 59976 1mo1A 87 7.94e+01 d.94.1.1 91363 2fhqA 141 8.09e+01 2a65A 519 8.15e+01 1cliA 345 8.24e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 1kdj 102 8.32e+01 1plc b.6.1.1 22864 1r0vA 305 8.40e+01 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 1x89A 178 8.58e+01 1csh 435 8.68e+01 1csh a.103.1.1 18880 1dptA 117 8.68e+01 1dptA d.80.1.3 39862 1em2A 229 8.69e+01 1em2A d.129.3.2 41321 1zpwX 90 8.74e+01 1qw2A 102 8.76e+01 d.249.1.1 96456