# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fe5A 94 2.46e-14 2fneA 117 3.07e-14 1g9oA 91 2.43e-13 1pdr b.36.1.1 60400 2fcfA 103 3.64e-13 1tp5A 119 7.56e-13 1be9A 119 8.48e-13 1pdr b.36.1.1 24774 1qavA 90 1.19e-12 1qauA b.36.1.1 24777 2h2bA 107 6.28e-12 2f0aA 98 8.57e-12 1n7fA 97 1.03e-11 b.36.1.1 91692 1n7eA 97 1.04e-11 b.36.1.1 91691 1ihjA 98 1.08e-11 1pdr b.36.1.1 62382 1l6oA 95 1.13e-11 b.36.1.1 84534 1mfgA 95 2.06e-11 b.36.1.1 79043 1q3oA 109 2.22e-11 b.36.1.1 95700 2h3lA 103 2.64e-11 1wf7A 103 1.42e-10 2f5yA 91 2.25e-10 1qauA 112 2.34e-10 1qauA b.36.1.1 24779 1kwaA 88 2.39e-10 1kwaA b.36.1.1 24772 1nf3C 128 3.01e-10 b.36.1.1 85596 1v5lA 103 1.07e-09 b.36.1.1 108378 1nteA 82 6.31e-09 b.36.1.1 86163 1r6jA 82 6.31e-09 b.36.1.1 97151 1fc6A 388 1.03e-04 1fc6A b.36.1.3,c.14.1.2 64738,64739 1lcyA 325 2.04e-04 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 5.17e-04 1y8tA 324 1.69e-02 1zn8A 180 1.92e-02 1qb7A 236 1.04e-01 1qb7A c.61.1.1 34087 1sotA 320 2.32e-01 b.36.1.4,b.47.1.1 105852,105853 1fxlA 167 4.32e-01 1b7fA d.58.7.1,d.58.7.1 39183,39184 1yg9A 330 5.32e-01 1g2qA 187 8.36e-01 c.61.1.1 65117 1x3mA 415 9.95e-01 1l1qA 186 9.97e-01 c.61.1.1 77653 1cliA 345 1.42e+00 1cliA d.79.4.1,d.139.1.1 39816,41459 1w30A 201 2.19e+00 1fwkA 296 3.02e+00 1fwkA d.14.1.5,d.58.26.1 37576,39398 1yjmA 110 3.17e+00 1q52A 314 3.23e+00 c.14.1.3 95846 2bw3A 534 3.29e+00 1xx6A 191 4.70e+00 1y0bA 197 5.28e+00 2iu4A 336 5.41e+00 2az4A 429 5.55e+00 1un8A 552 5.86e+00 c.119.1.2,a.208.1.1 103806,99661 1f3z 161 5.95e+00 1gpr b.84.3.1 28273 2adcA 229 6.11e+00 2fvgA 340 6.57e+00 1o63A 219 6.64e+00 c.94.1.1 92540 1ad3A 452 6.82e+00 1ad3A c.82.1.1 35335 1vcaA 202 6.86e+00 1vcaA b.1.1.3,b.1.1.4 21649,21685 1db3A 372 6.95e+00 1db3A c.2.1.2 29813 1u9yA 284 6.97e+00 2f69A 261 7.92e+00 1n6aA 259 7.99e+00 b.76.2.1,b.85.7.1 80121,80122 1vchA 175 1.03e+01 2g8oA 264 1.03e+01 1evfA 264 1.06e+01 1bkpA d.117.1.1 40932 2g8mA 264 1.06e+01 1qqqA 264 1.07e+01 1bkpA d.117.1.1 40931 1nonA 179 1.19e+01 c.61.1.1 103868 2bh8A 101 1.21e+01 2bsjA 133 1.24e+01 1t6t1 118 1.25e+01 2bhoA 130 1.27e+01 2bikB 313 1.31e+01 1xwsA 313 1.31e+01 1g57A 217 1.31e+01 1g57A d.115.1.2 60253 1o57A 291 1.34e+01 a.4.5.40,c.61.1.1 92483,92484 1mkmA 249 1.37e+01 a.4.5.33,d.110.2.2 79242,79243 1opr 213 1.37e+01 1opr c.61.1.1 34091 1h72C 296 1.41e+01 d.14.1.5,d.58.26.1 60712,60713 1gpr 162 1.42e+01 1gpr b.84.3.1 28267 1ujxA 119 1.44e+01 b.26.1.2 99473 1vdmA 153 1.44e+01 2agcA 162 1.51e+01 1xznA 179 1.56e+01 1oroA 213 1.61e+01 1opr c.61.1.1 34093 1yqfA 203 1.74e+01 1fdr 248 1.81e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1ltlA 279 1.91e+01 b.40.4.11 84701 1i6pA 220 1.96e+01 1ddzA c.53.2.1 61848 1jalA 363 1.97e+01 c.37.1.8,d.15.10.2 84138,84139 1r31A 428 1.99e+01 d.58.20.1,d.179.1.1 96897,96898 1u4cA 349 2.01e+01 b.69.4.2 107666 1wvcA 259 2.02e+01 1fsgA 233 2.02e+01 1qk3A c.61.1.1 34029 1vj0A 380 2.14e+01 b.35.1.2,c.2.1.1 100786,100787 1h70A 255 2.20e+01 1h70A d.126.1.3 60711 1rurH 218 2.29e+01 b.1.1.1,b.1.1.2 97879,97880 1lh0A 213 2.36e+01 c.61.1.1 73896 1gjjA 168 2.48e+01 a.140.1.1,a.140.1.1 83291,83292 1jpaA 312 2.60e+01 d.144.1.7 67011 2fdiA 211 2.64e+01 2c5qA 240 2.73e+01 1o5oA 221 2.76e+01 c.61.1.1 92509 1dmgA 225 2.95e+01 1dmgA c.22.1.1 31036 1q1rA 431 2.96e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2brfA 110 2.97e+01 1tzfA 259 3.04e+01 c.68.1.13 107476 2affA 120 3.09e+01 2aeeA 211 3.09e+01 1kcbA 340 3.18e+01 b.6.1.3,b.6.1.3 90951,90952 1uh5A 329 3.19e+01 c.2.1.2 107840 2bshA 125 3.33e+01 1h65A 270 3.37e+01 c.37.1.8 65640 1sjqA 105 3.44e+01 d.58.7.1 105660 1o6dA 163 3.47e+01 c.116.1.3 92567 2ghpA 292 3.55e+01 2cdqA 510 3.58e+01 1nbwA 607 3.62e+01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 2bnjA 303 3.64e+01 1su4A 994 3.68e+01 b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1 98993,98994,98995,98996 2f4wA 187 3.75e+01 1cq3A 233 3.76e+01 1cq3A b.27.1.1 23923 2bw4A 340 3.88e+01 1vkmA 297 3.90e+01 c.138.1.1 108670 2ptd 298 3.95e+01 2plc c.1.18.2 29605 1oq1A 223 4.09e+01 b.29.1.17 93408 1y791 680 4.26e+01 1bx4A 345 4.27e+01 1bx4A c.72.1.1 34935 1zm8A 259 4.34e+01 1vheA 373 4.36e+01 b.49.3.1,c.56.5.4 100669,100670 1wd5A 208 4.37e+01 1p7tA 731 4.41e+01 c.1.13.1 94319 1xv5A 401 4.49e+01 1d8cA 723 4.50e+01 1d8cA c.1.13.1 29325 1yioA 208 4.69e+01 1z5lA 285 4.72e+01 1uheA 97 4.84e+01 1yfqA 342 4.88e+01 1vckA 115 4.96e+01 2fikA 287 5.03e+01 1vkpA 383 5.09e+01 d.126.1.6 108686 1eulA 994 5.18e+01 1eulA 1nif 340 5.22e+01 1nif b.6.1.3,b.6.1.3 23048,23049 1rwrA 301 5.24e+01 b.80.1.11 97990 1i1wA 303 5.26e+01 c.1.8.3 76732 2gwnA 452 5.36e+01 2akrA 285 5.37e+01 2anuA 255 5.39e+01 1hvyA 288 5.43e+01 1bkpA d.117.1.1 41049 1ftkA 279 5.50e+01 1gr2A c.94.1.1 35819 1eceA 358 5.53e+01 1eceA c.1.8.3 28813 1g0sA 209 5.62e+01 1g0sA d.113.1.1 60187 1js8A 394 5.73e+01 a.86.1.1,b.112.1.1 67219,67220 1q5qA 259 5.76e+01 d.153.1.4 95904 1vpqA 273 5.83e+01 1wpgA 994 5.88e+01 1lvoA 302 5.89e+01 b.47.1.4 74284 2b4aA 138 5.90e+01 2aabL 218 5.90e+01 1ecfA 504 5.92e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1xmrA 243 6.08e+01 1p0zA 131 6.09e+01 d.110.6.1 93882 1yb3A 175 6.25e+01 1l7bA 92 6.31e+01 c.15.1.2 91053 1xs1A 193 6.32e+01 1hgxA 183 6.32e+01 1tc1A c.61.1.1 34027 1cl1A 395 6.33e+01 1cl2A c.67.1.3 34395 1jmuB 666 6.41e+01 2ckiA 262 6.42e+01 1koe 172 6.42e+01 1koe d.169.1.5 42448 2b8tA 223 6.48e+01 1ef8A 261 6.55e+01 1ef8A c.14.1.3 30921 1u0mA 382 6.56e+01 c.95.1.2,c.95.1.2 107557,107558 1xtqA 177 6.61e+01 1iw7C 1119 6.64e+01 e.29.1.1 71474 2gm5A 139 6.65e+01 1cg2A 393 6.68e+01 1cg2A c.56.5.4,d.58.19.1 33844,39360 1l0bA 229 6.68e+01 c.15.1.3,c.15.1.3 73391,73392 2d9iA 96 6.73e+01 1uacL 107 6.81e+01 b.1.1.1 99133 1vimA 200 6.85e+01 c.80.1.3 100758 2bsyA 278 6.95e+01 2f1rA 171 7.07e+01 1bzyA 217 7.24e+01 1qk3A c.61.1.1 34071 1gg4A 452 7.28e+01 1gg4A c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1omyA 65 7.31e+01 g.3.7.1 93354 1v0aA 178 7.32e+01 1o3yA 166 7.47e+01 c.37.1.8 86618 2a19B 284 7.47e+01 1mjc 69 7.54e+01 1mjc b.40.4.5 25319 1t6eX 381 7.61e+01 b.50.1.2 106564 1w78A 422 7.64e+01 1qzzA 374 7.64e+01 a.4.5.29,c.66.1.12 96719,96720 1st0A 337 7.65e+01 d.13.1.3,d.246.1.1 98979,98980 1fxrA 64 7.69e+01 1fxd d.58.1.4 38993 1vhxA 150 7.76e+01 c.55.3.8 100712 1rtu 114 7.77e+01 9rnt d.1.1.4 36139 1ueoA 63 7.83e+01 j.107.1.1 99269 1eaxA 241 7.84e+01 b.47.1.2 64889 1xo3A 101 8.10e+01 1yz7A 188 8.16e+01 1hw7A 255 8.18e+01 1i7fA d.193.1.1 61297 1tyv 542 8.18e+01 1tyv b.80.1.6 28038 1p42A 270 8.20e+01 d.14.1.7,d.14.1.7 87754,87755 1lw6I 64 8.25e+01 d.40.1.1 74294 1cjbA 231 8.33e+01 1qk3A c.61.1.1 34079 1fxkC 133 8.40e+01 1fxkC a.2.5.1 15702 1fm0E 150 8.40e+01 1fmaE d.41.5.1 38629 1r62A 160 8.47e+01 d.122.1.3 104816 1shwA 138 8.51e+01 b.6.1.5 105562 1bi5A 389 8.53e+01 1bi5A c.95.1.2,c.95.1.2 35985,35986 1r13A 148 8.55e+01 d.169.1.1,h.1.1.1 96782,96783 1whmA 92 8.67e+01 1fjrA 195 8.72e+01 1fjrA b.102.1.1 59855 2cwaA 263 8.77e+01 1evhA 112 8.79e+01 1evhA b.55.1.4 26997 1v61A 132 8.81e+01 b.55.1.1 108389 1ycoA 279 8.88e+01 1deuA 277 8.92e+01 1theB d.3.1.1 37085 2ampA 304 8.96e+01 1g8sA 230 8.97e+01 c.66.1.3 90507