# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fneA 117 5.44e-17 2fe5A 94 3.83e-16 1tp5A 119 2.28e-15 1be9A 119 3.11e-15 1pdr b.36.1.1 24774 2fcfA 103 1.12e-14 1g9oA 91 1.67e-14 1pdr b.36.1.1 60400 1qavA 90 5.14e-14 1qauA b.36.1.1 24777 1ihjA 98 9.38e-14 1pdr b.36.1.1 62382 1n7eA 97 1.43e-13 b.36.1.1 91691 2h2bA 107 2.01e-13 1l6oA 95 4.58e-13 b.36.1.1 84534 2f0aA 98 8.56e-13 1n7fA 97 1.48e-12 b.36.1.1 91692 1q3oA 109 1.67e-12 b.36.1.1 95700 2h3lA 103 1.98e-12 1mfgA 95 3.58e-12 b.36.1.1 79043 1v5lA 103 4.06e-12 b.36.1.1 108378 1wf7A 103 7.56e-12 1qauA 112 1.36e-11 1qauA b.36.1.1 24779 1nf3C 128 2.20e-11 b.36.1.1 85596 2f5yA 91 3.43e-11 1kwaA 88 1.04e-10 1kwaA b.36.1.1 24772 1r6jA 82 2.56e-08 b.36.1.1 97151 1nteA 82 2.78e-08 b.36.1.1 86163 1lcyA 325 8.93e-06 b.36.1.4,b.47.1.1 73834,73835 1fc6A 388 3.66e-05 1fc6A b.36.1.3,c.14.1.2 64738,64739 1te0A 318 1.63e-04 1sotA 320 3.12e-03 b.36.1.4,b.47.1.1 105852,105853 1y8tA 324 2.51e-01 2bh4X 134 3.36e-01 1fxlA 167 4.40e-01 1b7fA d.58.7.1,d.58.7.1 39183,39184 2a6tA 271 8.06e-01 1cot 129 2.17e+00 1ycc a.3.1.1 15899 1o63A 219 2.44e+00 c.94.1.1 92540 1xbbA 291 3.47e+00 1x6vA 630 3.59e+00 1xe0A 114 3.59e+00 1jhfA 202 3.68e+00 a.4.5.2,b.87.1.1 63057,63058 1rm6A 769 4.16e+00 1sw5A 275 4.56e+00 c.94.1.1 106069 1p99A 295 5.24e+00 c.94.1.1 94384 1db3A 372 5.56e+00 1db3A c.2.1.2 29813 1t3qB 788 5.99e+00 d.41.1.1,d.133.1.1 106369,106370 1r13A 148 6.00e+00 d.169.1.1,h.1.1.1 96782,96783 1bx4A 345 6.84e+00 1bx4A c.72.1.1 34935 1rwzA 245 8.75e+00 d.131.1.2,d.131.1.2 98005,98006 1oiaA 95 9.05e+00 d.58.7.1 87051 1xwsA 313 9.33e+00 1sw5B 275 9.40e+00 c.94.1.1 106070 2bikB 313 1.01e+01 1phk 298 1.09e+01 1cdkA d.144.1.7 41635 1yvcA 70 1.17e+01 1koe 172 1.17e+01 1koe d.169.1.5 42448 1euwA 152 1.33e+01 1dupA b.85.4.1 28349 1p35A 299 1.37e+01 1p35A b.28.1.1 23925 1urnA 97 1.43e+01 1urnA d.58.7.1 39153 1r61A 207 1.45e+01 c.8.8.1 97138 2h03A 291 1.45e+01 1u6bA 98 1.52e+01 d.58.7.1 107703 1dpuA 99 1.56e+01 1dpuA a.4.5.16 16150 1j24A 143 1.64e+01 c.52.1.20 84008 1se8A 301 1.72e+01 b.40.4.3 105448 1f3z 161 1.79e+01 1gpr b.84.3.1 28273 2aa4A 289 1.85e+01 2brfA 110 1.87e+01 1nu4A 97 1.89e+01 d.58.7.1 80731 1th7A 81 1.92e+01 1z1dA 103 1.92e+01 2aqwA 332 1.93e+01 1kgsA 225 2.02e+01 a.4.6.1,c.23.1.1 68596,68597 1qo0D 196 2.07e+01 1qo0D c.23.1.3 31125 2covD 104 2.09e+01 1a6f 119 2.11e+01 1a6f d.14.1.2 37564 1eo6A 117 2.11e+01 1eo6A d.15.1.3 37609 1h3qA 140 2.15e+01 d.110.4.3 76652 1uw0A 117 2.16e+01 g.39.1.12 108063 1rlhA 173 2.27e+01 d.256.1.1 97646 1xo5A 183 2.32e+01 1wxaA 116 2.59e+01 1vpqA 273 2.62e+01 1dg6A 191 2.70e+01 1d4vB b.22.1.1 23883 1ql3A 99 2.73e+01 1ycc a.3.1.1 15822 1qyaA 307 2.75e+01 d.21.1.2,d.21.1.2 104653,104654 1yqfA 203 2.84e+01 1f9aA 168 2.85e+01 1f9aA c.26.1.3 31602 1nz0A 118 2.86e+01 d.14.1.2 86433 2cc0A 195 3.11e+01 1j08A 226 3.14e+01 c.47.1.2,c.47.1.2 83855,83856 1r6xA 395 3.20e+01 b.122.1.3,c.26.1.5 97167,97168 2axcA 264 3.20e+01 1yjmA 110 3.30e+01 1xrsA 516 3.56e+01 2hc1A 291 3.62e+01 1s29A 92 3.74e+01 a.4.5.46 98373 1x71A 178 3.75e+01 1xdyA 298 3.79e+01 1jjtA 228 3.79e+01 1a7tA d.157.1.1 63139 2b4aA 138 3.89e+01 1tz9A 367 3.92e+01 c.1.15.6 107466 1g8sA 230 3.93e+01 c.66.1.3 90507 1xewY 172 4.01e+01 2adoA 196 4.02e+01 1x89A 178 4.14e+01 1cruA 454 4.22e+01 1c9uA b.68.2.1 27617 1kw4A 89 4.25e+01 a.60.1.2 73077 1a8l 226 4.34e+01 1a8l c.47.1.2,c.47.1.2 32777,32778 1mq7A 154 4.35e+01 b.85.4.1 79404 1gnuA 117 4.38e+01 d.15.1.3 65403 1gky 187 4.40e+01 1gky c.37.1.1 31839 1uyjA 296 4.44e+01 f.8.1.2 108143 1quqA 129 4.55e+01 1quqA b.40.4.3 25303 1l1dA 152 4.57e+01 b.88.1.3 73452 1wvqA 167 4.64e+01 2etxA 209 4.80e+01 1csh 435 4.84e+01 1csh a.103.1.1 18880 1em2A 229 4.86e+01 1em2A d.129.3.2 41321 1viuA 203 4.88e+01 d.113.1.1 100771 1rz2A 254 4.98e+01 b.100.1.1 105130 1cei 94 5.03e+01 1cei a.28.2.1 16939 1ex7A 186 5.04e+01 1gky c.37.1.1 59537 1pueE 89 5.04e+01 1awcA a.4.5.21 16165 1lw6I 64 5.16e+01 d.40.1.1 74294 2cu1A 103 5.17e+01 1fbnA 230 5.20e+01 1fbnA c.66.1.3 34181 2affA 120 5.43e+01 1ihgA 370 5.44e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 1ww7A 160 5.48e+01 2fdsA 352 5.57e+01 1earA 147 5.74e+01 b.107.1.1,d.58.38.1 64875,64876 1unkA 87 5.76e+01 1cei a.28.2.1 16935 1sixA 174 5.79e+01 b.85.4.1 98892 1inp 400 5.89e+01 1inp e.7.1.1 42972 2a19B 284 5.91e+01 1sdjA 310 5.93e+01 d.21.1.2,d.21.1.2 98807,98808 1th8A 145 6.08e+01 d.122.1.3 106908 1dvoA 152 6.24e+01 1dvoA a.136.1.1 19623 1mk4A 157 6.27e+01 d.108.1.1 84979 1rypL 212 6.53e+01 d.153.1.4 41880 2h00A 254 6.58e+01 2ghpA 292 6.63e+01 1s5uA 138 6.66e+01 d.38.1.1 98573 1irsA 112 6.83e+01 1qqgA b.55.1.2 26991 1t9iA 163 6.95e+01 1nvmA 345 7.03e+01 a.5.7.1,c.1.10.5 86249,86250 1v9dA 340 7.15e+01 a.207.1.1 100535 1to2I 64 7.20e+01 1rfmA 344 7.22e+01 c.122.1.1 97385 1kqqA 139 7.30e+01 a.4.3.1 72885 1rss 151 7.42e+01 1rss a.75.1.1 18392 1h9oA 112 7.46e+01 1qadA d.93.1.1 60837 1u59A 287 7.50e+01 d.144.1.7 107681 1z4eA 153 7.54e+01 2c5qA 240 7.54e+01 1eulA 994 7.72e+01 1eulA 1gpr 162 7.73e+01 1gpr b.84.3.1 28267 1bxeA 113 7.76e+01 1bxeA d.55.1.1 38898 2d4pA 141 7.78e+01 1jy1A 464 7.86e+01 d.136.1.3,d.136.1.3 67438,67439 1p32A 209 7.94e+01 1p32A d.25.1.1 38379 1s6cA 183 7.99e+01 a.39.1.5 98594 3c2c 112 8.08e+01 1ycc a.3.1.1 15885 2f6uA 234 8.09e+01 1xebA 150 8.12e+01 1b43A 340 8.14e+01 1a76 a.60.7.1,c.120.1.2 18092,33362 2bl1A 172 8.18e+01 2evwX 166 8.21e+01 1su4A 994 8.23e+01 b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1 98993,98994,98995,98996 1m4zA 238 8.25e+01 b.34.12.1 78630 1yrlA 491 8.29e+01 1s96A 219 8.29e+01 c.37.1.1 98740 1qpcA 279 8.32e+01 1fgkA d.144.1.7 41685 2b3yA 888 8.53e+01 2cmd 312 8.53e+01 2cmd c.2.1.5,d.162.1.1 30135,42102 2a77H 222 8.55e+01 1nwbA 124 8.58e+01 b.124.1.1 86296 1i8lC 126 8.60e+01 1ah1 b.1.1.1 61974 1k78A 149 8.85e+01 a.4.1.5,a.4.1.5 68255,68256 1zkkA 167 8.89e+01 2masA 314 8.91e+01 2masA c.70.1.1 34810