# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ffyA 917 1.60e-01 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 2f4qA 346 3.47e-01 1b24A 188 6.74e-01 1b24A d.95.2.1,d.95.2.1 40573,40574 2c3vA 102 1.04e+00 1yaxA 153 1.24e+00 1qx4A 274 1.32e+00 b.43.4.2,c.25.1.1 104624,104625 1mxiA 160 1.55e+00 c.116.1.1 79646 1lktA 104 1.61e+00 1lktA b.90.1.1 28398 1ui0A 205 1.92e+00 c.18.1.2 99411 1jsf 130 2.16e+00 3lzt d.2.1.2 36410 1vq2A 193 2.18e+00 2fafA 608 2.23e+00 1yx1A 264 2.63e+00 1tp6A 128 2.69e+00 d.17.4.12 107184 1xwwA 157 3.34e+00 1w41A 101 3.43e+00 1i3dA 146 3.56e+00 a.1.1.2 61587 2bgcA 238 3.76e+00 2cfuA 658 4.05e+00 1hg8A 349 4.32e+00 b.80.1.3 65830 1szoA 257 4.33e+00 c.14.1.3 106164 2jdxA 385 4.82e+00 1jdw d.126.1.2 41139 1xhcA 367 5.08e+00 1yksA 440 5.54e+00 1vhnA 318 5.62e+00 c.1.4.1 100693 2a4hA 126 5.72e+00 1jogA 146 5.98e+00 a.24.16.2 77142 1l1qA 186 5.99e+00 c.61.1.1 77653 1d4oA 184 6.39e+00 1d4oA c.31.1.4 31748 1dg9A 157 6.48e+00 1dg9A c.44.1.1 32637 1iscA 192 6.79e+00 1avmA a.2.11.1,d.44.1.1 15733,38726 1izoA 417 6.83e+00 a.104.1.1 83851 3ezmA 101 7.15e+00 3ezmA b.89.1.1 28395 1jdw 423 7.17e+00 1jdw d.126.1.2 41129 1y8qB 640 7.25e+00 2a2pA 129 7.79e+00 1txkA 498 7.96e+00 b.1.18.2,b.30.5.9 107425,107426 1vmjA 151 8.59e+00 1gsa 316 9.95e+00 1gsa c.30.1.3,d.142.1.1 31718,41477 1e25A 282 1.02e+01 1e25A e.3.1.1 42731 1ne9A 335 1.05e+01 d.108.1.4,d.108.1.4 91839,91840 1pufB 73 1.06e+01 a.4.1.1 95132 2h3jA 75 1.09e+01 1khbA 625 1.10e+01 c.91.1.1,c.109.1.1 68606,68607 1zin 217 1.20e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1hb6A 86 1.20e+01 a.11.1.1 70959 2b59B 172 1.25e+01 2cr5A 109 1.33e+01 1zkdA 387 1.37e+01 1sqwA 188 1.37e+01 1umkA 275 1.39e+01 1n82A 331 1.40e+01 c.1.8.3 91703 1byrA 155 1.51e+01 1byrA d.136.1.1 41450 1vr8A 142 1.51e+01 1omrA 201 1.56e+01 a.39.1.5 93349 1i8oA 114 1.60e+01 1ycc a.3.1.1 61979 1fsgA 233 1.67e+01 1qk3A c.61.1.1 34029 1b9wA 89 1.74e+01 1b9wA g.3.11.4,g.3.11.4 44334,44335 1v32A 101 1.76e+01 a.42.1.1 100277 1gyxA 76 1.83e+01 d.80.1.1 76387 1ktbA 405 1.86e+01 b.71.1.1,c.1.8.1 72960,72961 1ttzA 87 1.87e+01 c.47.1.1 107309 1vbvA 105 1.89e+01 1bquA 215 1.91e+01 1bquA b.1.2.1,b.1.2.1 22066,22067 1zy9A 564 1.91e+01 1nxuA 333 1.94e+01 c.122.1.1 86389 1j3bA 529 1.96e+01 c.91.1.1,c.109.1.1 77071,77072 1i2uA 44 1.98e+01 g.3.7.4 65987 1woyA 500 2.00e+01 2gclA 261 2.02e+01 1bouA 139 2.05e+01 1bouA a.88.1.1 18521 1qgtA 149 2.05e+01 1qgtA a.62.1.1 18135 1izmA 184 2.14e+01 a.199.1.1 90725 1xewY 172 2.16e+01 1ztcA 221 2.20e+01 1qjpA 171 2.32e+01 1bxwA f.4.1.1 43742 2fa8A 105 2.32e+01 1iseA 185 2.32e+01 d.67.3.1 90691 1cqyA 99 2.37e+01 1b9zA b.3.1.1 22527 1s4nA 348 2.39e+01 c.68.1.16 98501 1wg8A 285 2.45e+01 1irdB 146 2.47e+01 a.1.1.2 66287 1qhoA 686 2.47e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1uvqA 197 2.48e+01 b.1.1.2,d.19.1.1 100062,100063 1vfrA 218 2.57e+01 1vfrA d.90.1.1 40247 1jf3A 147 2.65e+01 a.1.1.2 71642 1vjvA 415 2.72e+01 d.3.1.9 108632 1fjgP 88 2.72e+01 1emwA d.27.1.1 38444 1ckaA 57 2.79e+01 1ckaA b.34.2.1 24459 1qauA 112 2.80e+01 1qauA b.36.1.1 24779 1rrmA 386 2.81e+01 e.22.1.2 105081 2a25A 193 2.84e+01 1j1tA 233 2.85e+01 b.29.1.18 90771 1m93C 41 2.85e+01 1f2tB 148 2.89e+01 1f2tB 1om4A 422 2.92e+01 d.174.1.1 87067 1ri9A 102 2.94e+01 b.34.2.1 97506 1g5aA 628 3.04e+01 b.71.1.1,c.1.8.1 65152,65153 2ct5A 73 3.04e+01 1lniA 96 3.09e+01 d.1.1.2 74046 1giqA 413 3.09e+01 d.166.1.1,d.166.1.1 76224,76225 1s3rA 535 3.12e+01 1vr9A 213 3.16e+01 1yqtA 538 3.19e+01 1v0jA 399 3.20e+01 1ispA 181 3.26e+01 c.69.1.18 76778 1lwdA 413 3.29e+01 c.77.1.1 78265 1zbfA 142 3.37e+01 1oshA 232 3.45e+01 a.123.1.1 93496 2gi9A 56 3.57e+01 2abwA 227 3.57e+01 1nd4A 264 3.58e+01 d.144.1.6 91815 1vrvA 101 3.63e+01 1bkrA 109 3.65e+01 1bkrA a.40.1.1 17394 1npsA 88 3.83e+01 1prs b.11.1.1 23622 1iakA 199 3.89e+01 1iakA b.1.1.2,d.19.1.1 21625,38199 1nuuA 252 3.91e+01 c.26.1.3 86209 1ct5A 256 3.94e+01 1ct5A c.1.6.2 28663 1o7fA 469 3.97e+01 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1v8cA 168 3.98e+01 d.15.3.1,d.129.5.1 100495,100496 2cu3A 64 4.07e+01 1c75A 71 4.22e+01 451c a.3.1.1 15796 1s3cA 141 4.29e+01 8fabA 212 4.35e+01 8fabA b.1.1.1,b.1.1.2 19772,20882 1xfsA 178 4.37e+01 d.129.3.5 109589 1eceA 358 4.38e+01 1eceA c.1.8.3 28813 1qy1A 174 4.40e+01 b.60.1.1 96568 1y14B 171 4.41e+01 1ur1A 378 4.47e+01 c.1.8.3 99804 1f00I 282 4.47e+01 1f00I b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 1fp1D 372 4.48e+01 1fpqA a.4.5.29,c.66.1.12 59939,59940 5eau 548 4.50e+01 5eat a.102.4.1,a.128.1.3 18851,19443 1e19A 314 4.51e+01 1b7bA c.73.1.1 34967 1un3A 123 4.54e+01 d.5.1.1 99646 1wn5A 130 4.56e+01 1nvpB 57 4.56e+01 a.32.1.1 92211 1wd2A 60 4.58e+01 g.44.1.1 109232 1qmvA 197 4.74e+01 1qq2A c.47.1.10 33066 1ijqA 316 4.75e+01 1ijqA b.68.5.1,g.3.11.1 62506,62507 2d1yA 256 4.76e+01 1zndA 174 4.79e+01 1m0wA 491 4.84e+01 c.30.1.4,d.142.1.6 78363,78364 1hw6A 278 4.89e+01 1frb c.1.7.1 61296 1bed 181 4.91e+01 1fvkA c.47.1.13 90330 2cwpA 112 4.94e+01 1j79A 347 4.97e+01 1j79A c.1.9.4 62675 1gt1A 159 5.00e+01 b.60.1.1 90515 1ng2A 193 5.16e+01 b.34.2.1,b.34.2.1 85660,85661 1tqzA 133 5.19e+01 1lkkA 105 5.22e+01 1lckA d.93.1.1 40412 1kutA 230 5.22e+01 d.143.1.1 73017 1dk8A 147 5.22e+01 1agrE a.91.1.1 18548 1ci4A 89 5.27e+01 1qckA a.60.5.1 17970 1k1eA 180 5.34e+01 c.108.1.5 67995 1cr1A 296 5.35e+01 1cr1A c.37.1.11 32286 1v1aA 309 5.43e+01 c.72.1.1 100249 2dg5B 190 5.43e+01 1eswA 500 5.47e+01 1cwyA c.1.8.1 59500 1z3eB 73 5.48e+01 2ga9A 297 5.57e+01 1f5vA 240 5.60e+01 1bkjA d.90.1.1 40255 1vqoS 85 5.66e+01 1uasA 362 5.75e+01 b.71.1.1,c.1.8.1 88388,88389 1x3sA 195 5.78e+01 1p2fA 220 5.80e+01 a.4.6.1,c.23.1.1 87720,87721 2ciaA 102 5.94e+01 1w9aA 147 6.07e+01 1xkzA 255 6.18e+01 1yb3A 175 6.19e+01 1ywfA 296 6.22e+01 1b0uA 262 6.25e+01 1b0uA c.37.1.12 32370 1lgpA 116 6.26e+01 b.26.1.2 73890 1eemA 241 6.27e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 1zgzA 122 6.30e+01 2aq6A 147 6.39e+01 1wkvA 389 6.43e+01 1gmuA 143 6.47e+01 b.107.1.1,d.58.38.1 65335,65336 1k55A 246 6.47e+01 e.3.1.1 68156 1ny1A 240 6.52e+01 c.6.2.3 86395 4tsvA 150 6.53e+01 2tnfA b.22.1.1 23860 1yarH 217 6.53e+01 1lmq 129 6.56e+01 3lzt d.2.1.2 36588 1pl3A 186 6.59e+01 b.1.9.1 88158 1i88A 389 6.70e+01 c.95.1.2,c.95.1.2 66070,66071 1i07A 60 6.76e+01 1aojA b.34.2.1 61477 1wcgA 464 6.79e+01 1r1qA 100 6.89e+01 d.93.1.1 104763 1zvpA 133 6.90e+01 1dvoA 152 6.90e+01 1dvoA a.136.1.1 19623 1i4uA 181 6.95e+01 b.60.1.1 61732 1f1eA 154 6.96e+01 a.22.1.2 64927 1vqoL 165 7.02e+01 1vetA 124 7.06e+01 d.110.7.1 108553 1hxrA 115 7.08e+01 1fwqA b.88.1.1 28392 1kb0A 677 7.08e+01 a.3.1.6,b.70.1.1 68378,68379 1bbhA 131 7.15e+01 1bbhA a.24.3.2 16546 1q7fA 286 7.19e+01 b.68.9.1 96036 2esnA 310 7.24e+01 1ugjA 141 7.25e+01 b.41.1.3 107826 1oapA 109 7.29e+01 d.79.7.1 92706 1xrkA 124 7.29e+01 2h00A 254 7.34e+01 1cv8 174 7.44e+01 1cv8 d.3.1.1 37089 1uhvA 500 7.53e+01 b.71.1.2,c.1.8.3 99402,99403 1y9wA 140 7.67e+01 1h8eG 272 7.70e+01 1e79G c.49.2.1 60756 1fbr 93 7.78e+01 1fbr g.27.1.1,g.27.1.1 44948,44949 1ldjA 760 7.82e+01 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 1y88A 199 7.87e+01 1sur 215 7.96e+01 1sur c.26.2.2 31620 1xkiA 162 8.07e+01 1v84A 253 8.11e+01 c.68.1.7 108419 1mkmA 249 8.25e+01 a.4.5.33,d.110.2.2 79242,79243 1te7A 103 8.27e+01 2f9zC 159 8.46e+01 1u2pA 163 8.49e+01 2cq8A 110 8.50e+01 1wj9A 211 8.58e+01 1s6xA 34 8.63e+01 1jofA 365 8.77e+01 b.69.10.1 71775 1jb7B 260 8.78e+01 1otcB b.40.4.3 62839 1g8aA 227 8.82e+01 c.66.1.3 90506 1t3yA 141 8.82e+01 2db1A 118 8.88e+01 1odzA 386 8.92e+01 c.1.8.3 86889 1fjgK 129 8.95e+01 1fjfK c.55.4.1 33733