(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.soe.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0357 NESG:GR101, Archaeoglobus fulgidus, 141 res 
                 10        20             30              40          5
                 |         |              |               |           
   1 ...MVKFACRAITRGRAEGEALVTKEYI....SFL.GGI...DKETG.IV.K.E.DC.EIKGESV
   2 mi.PIKLKGRTISRGCAKGEVLLSRDPI....SFL.GNV...DPKTGvVI.E.E.NH.ALEGKSI
   3 mi.PIKFKGRTISRGCAEGEVLISRDPI....SFL.GSV...DPRTGiVV.E.E.KH.SLAGKSI
   4 mv.PIKLKGRTISRGCAEGEILISRDPI....SFL.GSV...DPKTGiVV.E.E.KH.SLAGKSI
   5 ...-MKFACRAITRGRAEGEALVTKEYI....SFL.GGI...DKETG.IV.K.E.DC.EIKGESV
   6 ...-MKLKGRKIVGGKAEGEVIVSRKPL....SFL.GGV...DPETG.IVtD.A.ES.DIRGQSI
   7 mv.TIKIECRTIARGVAEGEVLLSEDAL....SFL.GNV...DPKTGvVV.D.P.GH.AIYGECI
   8 ...-MEIKCHRVSGGCAEGPALVTRERI....SFL.GNV...DPETGvVV.D.P.AH.ELYGRSI
   9 agtPIVLRGRKVVGGCVEGEALVTRDRI....SGW.GGI...DPRTGtII.E.T.RH.ELRGQSF
  10 agtPIVLRGRKVVGGCVEGEALVTRDRI....SGW.GGI...DPRTGtII.E.T.RH.ELRGRSF
  11 ...-MEVDCRVISRGKGRGPVLVSTEPL....SFL.GGV...DPGTGrVI.D.Q.KH.PLHGRSI
  12 artPIVLRGRKVVGGRIEGEALVTRDRI....SGW.GGI...DPRTGtII.E.T.RH.ELRGQSF
  13 ...-MKLKGRGIVKGVAEGELVVSRKPL....SFL.GGV...DPNTG.IItD.P.ES.DIQGEKI
  14 ettGTFLMGDTLVPGSACARPFVLDKPL....SFW.GGY...DSGAGrIV.D.R.GH.PQAGASL
  15 eaaRKELTGDTLVPGSACARPFVLDKPL....SFW.GGY...DSGAGkIV.D.R.GH.PQAGASL
  16 ...-MKLKGKGVGKNIVEGEVIVSKKPL....SFL.GGV...DPETGiII.D.P.DS.DIKGESI
  17 ettGTFLTGDTLVPGSACARPFVLDKPL....SFW.GGY...DSGAGrIV.D.R.GH.PQAGASL
  18 mkhAHLIVPRTLVAGSASGELLYAPTGL....SFW.GGV...DPRSAeVI.D.R.HH.PLSGRHL
  19 mkhAHLIVPRTLVAGSASGELLYAPTGL....SFW.GGV...DPRSAeVI.D.R.HH.PLSGRHL
  20 mkhAHLIVPRTLVAGSASGELLYAPTGL....SFW.GGV...DPRSAeVI.D.R.HH.PLSGRHL
  21 mkhAHLIVPRTLVAGSASGELLYAPTGL....SFW.GGV...DPRSAeVI.D.R.HH.PLSGRHL
  22 mkhAHLIVPRTLVAGSASGELLYAPTGL....SFW.GGV...DPRSAeVI.D.R.HH.PLSGRHL
  23 m..SSNIKCRIISKGKDSGNALVTKDPI....SFL.GGV...DPKTGiVI.D.K.KH.ELYNECI
  24 mkhAHLIVSRTLVAGSASGELLYAPTGL....SFW.GGV...DPRSAeVI.D.R.HH.PLSGRHL
  25 ...-MKLKGKGIGKVVVEGEVIVSRKPL....SFL.GGV...DPETGtIT.D.P.ES.DIKGESI
  26 ...---MTADTLVAGRVCADTIVLDQPL....SFW.GGY...DSAAGrIV.D.R.GH.PQAGASL
  27 ...---MTGDTLVPGSACARPFVLDKPL....SFW.GGY...DSGAGrIV.D.R.GH.PQAGASL
  28 ...-MQYHGHCLVDSAATGKLLYANVGL....SFW.AGV...DSQTGeII.D.R.HH.PLHGQSV
  29 dtaSRTFHCKTWVTGQTQGKAVIARERI....SFW.GGF...DPQTGrIV.D.P.YS.SLRGRDI
  30 ...-MEFRGQCLIKGAASAELQFCPVEI....SFW.GGV...NPETGqVV.D.R.HH.PLCGQSI
  31 ...-MTMTASSILPGIADGPILFSDEPL....SFW.GGV...DPATGrII.D.V.HH.PLQGRSI
  32 datMRQLTGDTLVPGSACANTVVLDKPL....SFW.GGY...DSGVGrIV.D.C.GH.PQAGASL
  33 slqETTWTGTAYVQGRASAKLLASNLEL....SFW.GGV...DPQTSeVI.D.R.HH.TLSGKHL
  34 ...-MELKGRSISKGIIEGIAIVSKKPF....SFL.GGV...DEEGN.II.D.K.DS.DLYGQSL
  35 ...-MIIQGRGISRGIGKGPLLIGPDPI....SFL.SGV...DPETG.IVlE.P.GH.PLEGKDI
  36 ...---------MTGQTQGKAVIARERI....SFW.GGF...DPQTGrIV.D.P.YS.SLRGRDI
  37 svsPVRCEPVVDVEEPVEAEVLVSSQRL....SFL.GGV...DPKTGeVV.D.P.SH.ELCGEKL
  38 ...-MKIYGKAIVHGAATGEILYSKVPL....SFW.GGV...EQTTGdII.D.H.HH.PLFGENI
  39 vstTAAPEARSILAGAAEGKVIATTEAL....SFW.GGV...DPATGkVI.D.V.HH.PLHGICL
  40 ...----MAQCIVAAAASGPVLVCDEGL....SFW.GGV...DPETGrVI.D.A.HH.PQHGAAL
  41 ...----MQDLIVAAEVQGPILLCDEGL....SVW.GGV...DPLSGrII.D.A.HH.PQQGQSL
  42 m..SGLDPARSILQGSAEGPVIATGEAL....SFW.GGV...DPATGcVI.D.V.HH.PLHGVPL
  43 ...MKELNGRIISKGVVEGEAIISKSPI....SFL.GGV...NEE-G.IVtD.K.EN.ELFGKSI
  44 mseQRIFRGIPYVTGAASATLLAADLEL....SFW.GGV...DPRTGeII.D.R.FH.PLSGRFM
  45 me.VLRYRSRPIVGGEAEGPAVVIDS-L....SFY.GEV...DPETG.VT.S.G.--.---GKPL
  46 akdAVERLGTFQLAGEADGLALVFSQPL....SFW.GGI...DAETGdII.D.H.SH.PGLGQNV
  47 idqRGWPPASTLAAGHARGAILAL-EPL....SFW.GGY...DAALGkII.E.K.SH.PAHGQSL
  48 ...-MTRKGTIVVAGRADGTALVLGEPL....SFW.GGI...DVETGtII.D.H.SH.PSLGARV
  49 nekPIILKGITKVEGYAEGEALVTSSFL....SHLvNAV...NSD-G.VI.RiF.GH.PLVGQSY
  50 m..SEVFAVDRAWGPVVEGQALVMREGF....SPR.YDL...DRWSG.VI.S.RiGH.SAEGESI
  51 nrdLPVLRALRSLPDKVVGEALVSNDAI....SMR.YDV...DASTGkVV.R.P.SH.DLYGQSI
  52 ...MKTFKGRVIVPGTVSAEALVSSQGFntlaSFQ.KALmfgDKKAH.CS.D.Q.NNlDLYKKEI
  53 ...--MLKPLVKGRGRVRAEVVKITSPV....SLL.GDL...DPEAG.--.-.-.--.KLAGVDV


      0        60        70         80         90            100       
     |         |         |          |          |              |       
   1 AGRILVFPGGKGSTVGSYVLL.NLRKNGVAPKAIINKKT.ETIIAVGAAMAE.....IPL.VE.V
   2 QGKVLVFPHGKGSTVGSYVMY.QLKKNGTAPAAIINLET.EPIVAVGAIISE.....IPL.VD.M
   3 KGKVLVFPHGKGSTVGSYVMY.QLKKNEAAPAAIINLET.EPIVAVGAIISE.....IPL.VD.M
   4 KGKVLVFPHGKGSTVGSYVMY.QLKKNGAAPVAIINLET.EPIVAVGAIISE.....IPL.VD.M
   5 AGRILVFPGGKGSTVGSYVLL.NLRKNGVAPKAIINKKT.ETIIAVGAAMAE.....IPL.VE.V
   6 AGKILVFPRGKGSTVGSYVIY.ALKKNNKAPKAIIVGEA.ETIVATGAIISD.....IPM.VD.G
   7 RDKILVFPHGKGSTVGSYVIY.QLKKNNVSPAAMINIDS.EPIVAVGAIISD.....IPL.VD.R
   8 AGVVLIFPGGKGSTVGSYVIY.QLRKRGMAPAAMINLKS.EPIVAVGAIISD.....IPL.VD.R
   9 ANKVLVFPGAKGSSGWSSQFH.IARIAGTAPAAMLFNEM.TTKIALGAVVSH.....APS.LT.D
  10 ANKVLVFPGAKGSSGWSSQFH.IARIAGTAPAAMLFNEM.TTKIALGAVVSH.....APS.LT.D
  11 RGKVLLIPGGKGSTVGSYVIF.QMAKNETAPAAIICLNA.EPIIATGAIMAG.....IPM.VD.R
  12 ANKVLVFPGAKGSSGWSSQFH.IARIAGTAPAAMLFNEM.TTKIALGAVVSH.....APS.LT.D
  13 TGKILAFPRGKGSTVGSYVIY.ALAKKGTGPKAIIVEEA.EAIVAVGAIIAG.....IPL.VT.G
  14 AGKVMVMPHAKGSSSSSSVLA.EAVRNGTGPVGIVLKER.DLIISIGAIVAAel6iaVPV.VC.V
  15 AGKVMVMPHAKGSSSSSSVLA.EAVRNGTGPVAIVLKER.DLIISIGAIVAAel6iaVPV.VC.V
  16 EGKILVFPKGRGSTVGSYVIY.ALSRNGKAPKAIIVEEA.EPIVTVGAIISG.....IPL.IA.G
  17 AGKVMVMPHAKGSSSSSSVLA.EAVRNGTGPVGIVLKER.DLIISIGAIVAAel6iaVPV.VC.V
  18 HGRLLAIPGGRGSCTGSSVLL.ELILGGRAPAAILLREP.DEILALGAIVAEel6rsLPI.AC.L
  19 HGRLLAIPGGRGSCTGSSVLL.ELILGGRAPAAILLREP.DEILALGAIVAEel6rsLPI.AC.L
  20 HGRLLAIPGGRGSCTGSSVLL.ELILGGRAPAAILLREP.DEILALGAIVAEel6rsLPI.AC.L
  21 HGRLLAIPGGRGSCTGSSVLL.ELILGGRAPAAILLREP.DEILALGAIVAEel6rsLPI.AC.L
  22 HGRLLAIPGGRGSCTGSSVLL.ELILGGRAPAAILLREP.DEILALGAIVAEel6rsLPI.AC.L
  23 TDKILVIPSGKGSTVGSYVIY.QMAKNNTAPRAIICQKA.EPIIAIGAIISK.....IPM.VD.N
  24 HGRLLAIPGGRGSCTGSSVLL.ELILGGRAPAAILLREP.DEILALGAIVAEel6rsLPI.AC.L
  25 TGKILVFPKGKGSTVGSYILY.ALSKNGKGPKAIIVEEA.EPIVTAGAIISG.....IPL.IT.N
  26 AGRILVMPHAKGSSSSSSVLA.EAVRNGTGPAGIVMKER.DLIISIGAIVAAel6iaVPV.VC.V
  27 AGKVMVMPHAKGSSSSSSVLA.EAVRNGTGPVGIVLKER.DLIISIGAIVAAel6iaVPV.VC.V
  28 NGRILAIPCSRGSCTGSIVLI.ELLLNQCAPAGLIFQQP.EQIITLGVVVAKtl6lsIPV.LV.L
  29 SDCVLILLSSKGSSGTSGMLS.LATRAGHAPAAMIQVEM.DPVTVMGCLVNN.....IPL.LQ.A
  30 AGRVLAIPCGRGSCSGSTVML.KLLLNGCAPAALIFEKP.EQILTLGVLVGKvl6cpIPV.VV.L
  31 AGRVLMMPSTRGSCTGSGVLL.DLVLSGRGPAALVFSEP.EDVVTLGALIAAem6kaLPV.LR.L
  32 AGRIMVMPHAKGSSSSSSVLA.EAVRNGTGPVGIVLKER.DLIISIGAIVAAel6iaVPV.VR.V
  33 QNTILAIPGGRGSCTGSGIML.ELLLNGKAPEAIIFERR.EDILTLGVMIAEev6qsIPV.LV.L
  34 KGKIFVFPYGRGSTVGSYVIY.GLAKRGIL-KGIVNKEC.EPIVATGAILGG.....IPL.VD.K
  35 TGSVLAFEYGKGSTVGSYILY.ALSRNGHAPAAIINQEA.ETIIVVGAIMGK.....IPM.ID.R
  36 SDCVLILLSSKGSSGTSGMLS.LATRAGHAPAAMIQVEM.DPVTVMGCLVNN.....IPL.LQ.A
  37 TGRVLVLPGGRGSTVGSYVLM.EMADRGTAPAGIVVREA.EPILVVGCVLGD.....IPL.FH.R
  38 KDRVLVLPSTRGSCSGSLVLI.ELLVNRVAPTALVFWDS.EAIVTTGVIVARtl6lsLPV.YR.V
  39 TGGVLFMPTSRGSCTGSGVLL.DLILTGRAPSALVFCEA.EDVLTLGALVAAem6kaLPV.I-.R
  40 AGAVVMMPTSRGSCSGSGVLL.ALALNGHAPAALVFREG.EDVLTLGALVAAwmyd.RPVaVL.R
  41 AGHVVMMPTSRGSCTGSGVLL.GLAFAGTAPKALVFREG.EDILTLGALVATrlfe.RPIaVL.R
  42 TGSILMMPSSRGSCTGSGVLL.DLVLTGRGPAALVFSEP.EDVLTLGALIASem6kpLPV.LR.L
  43 ANKIFVFPSGKGSTVGSYVIY.GLAKRGLL-KGMVNFES.EPIVATGAILGK.....IPL.VD.K
  44 KDTILAIPGGRGSCGGSVIMM.ELILNGLGPKALIFERR.EEIITLGVMVAEel6ktAAV.VT.L
  45 AGRVAAIRRSRGSTVGSYVIY.ALKENGVAPLAILMERA.EPIVIAGCVLAG.....IPL.YD.G
  46 AGRILVMPSGRGSSSSSSVLA.EAIRRGTAPAGILLERP.DPILAVGAIVAEfl6ihMPL.V-.V
  47 AGKIMVMPRAKGSSSSSSVLA.EAIRNGTGPSGIVLRER.DLIISIGVIVANel6vsVPL.VV.V
  48 TGRILVMPGGRGSSSSASVFA.ESIRRGTGPLGVLLARA.DPILTVGAMVAAsl6rdCPI.V-.V
  49 AGKIVVYDTDKFSTGGAWGLYfKAKVTNSAPKALICRTV.HPISIGGAIDAG.....IPA.VD.S
  50 KDRILVIPTAKGGVAGGWAFY.DLLHKGIAPKALVFGKL.NPVMVQGAVLAG.....MPI.ME.G
  51 SGKVLIFKNTKGGVATGWALL.NLKSRGTAPIALVCDTT.NPVFVQGAALAG.....LPI.MD.G
  52 AGKALCLPQTIGSTTGGMVIF.CAASMGRQPACMLFSEPiDSLAAAGVILAAnf6nsIPT.VD.N
  53 VGKIAALPYVKGSTVGPYVLW.GAARRGKAPLAIVAQKP.DLMLISACVLAG.....IPL.FQgV


              110          120                130          140      
               |            |                  |            |      
   1 ...RDE...KFFEA.VK.TGDR.VVVN.AD.E..G.Y....VE...LIELEHHHHH.....H
   2 ...LEK...NPYEV.LN.NGDL.VLVN.GS.K..G.Y....IE...LFKQETIKTEnek..K
   3 ...LEK...DPYEF.LK.DGDT.VLVN.GS.E..G.Y....IE...LLKQGEGQAK.....K
   4 ...LEK...SPYES.LK.DGDV.VQVN.GS.E..G.Y....IE...LIKPKGSKIE.....E
   5 ...RDE...KFFEA.VK.TGDR.VVVN.AD.E..G.Y....VE...LIE-------.....-
   6 ...VD-...--VSK.LK.TGMK.VRVD.AD.S..G.E....VE...ILEDGE----.....-
   7 ...LDK...DPFTI.FK.NGDR.VKVD.ST.S..G.F....VE...LMDR------.....-
   8 ...VPE...WILD-.VK.DGTR.VVVD.AR.R..E.V....VV...LPDGSVKV--.....-
   9 ...FDV...DPLDV.IE.TGDW.VRVD.AE.R..G.V....VE...VLKRSRT---.....-
  10 ...FDI...DPLDV.IE.TGDW.VRVD.AD.R..G.V....VE...VLKRSRV---.....-
  11 ...PSE...DLLGL.LE.DSME.VEVD.AD.E..G.K....IR...F---------.....-
  12 ...FDI...DPLDV.IE.TGDW.VRVD.AE.R..G.V....VE...VLKRSRT---.....-
  13 ...ID-...--ISK.LK.SGMK.VRVD.GE.R..G.E....VE...IIAQGDL---.....-
  14 ...SDE...VYDAI.VA.ATGD.VRIE.TG.E..G.D....GGariHLGTDARSGG.....-
  15 ...TDD...VYDAI.VA.ATGE.VRIE.AG.E..G.D....GG...A-RIDLGDAArsa..-
  16 ...VD-...--ISK.LR.TGMK.VRIN.PR.T..G.E....VE...IIG-------.....-
  17 ...SDE...VYDAI.VA.ATGD.VRIE.TG.E..G.D....GGariHLGTDARSGG.....-
  18 gerFDElaaYPWAR.LA.DGRLeLHRD.AP.P..P.LetrpAE...ALATDAGPRL.....-
  19 gerFDElaaYPWAR.LA.DGRLeLHRD.AP.P..P.LetrpAE...ALATDAGPRL.....-
  20 gerFDElaaYPWAR.LA.DGRLeLHRD.AP.P..P.LearpAE...ALATDAGPRL.....-
  21 gerFDElaaYPWAR.LA.DGRLeLHRD.AP.P..P.LearpAE...ALATDAGPRL.....-
  22 gerFDElaaYPWAR.LA.DGRLeLHRD.AP.P..P.LearpAE...ALATDAGPRL.....-
  23 ...PDV...DIINT.IN.TNDE.ITVD.AD.N..S.T....IV...IN--------.....-
  24 gerFDElagYPWAR.LA.DGRLeLHHD.AP.P..P.LpaqpAE...APATDAGPRL.....-
  25 ...VD-...--ISK.LK.TGMR.VRIN.PQ.E..G.E....VE...ILAEGNL---.....-
  26 ...TER...DYRAI.VA.ASGP.VRID.AS.D..G.D....GG...A-RIYVGDAArsg..F
  27 ...SDV...VYDAI.VA.ATGD.VRIE.AG.E..G.D....GGar.I---------.....-
  28 ...KPA...EFHS-.LK.DYRY.AAIT.GP.T..L.Q....TG...EDPLPPPTYEapsc.-
  29 ...TGF...DPFEQ.IQ.DGDL.VRID.GE.N..G.T....IT...LAPGQA----.....-
  30 ...SSS...DFSKI.CN.RH-F.AAID.GE.T..V.L....VSda.LLPTPKLPADpv9lsD
  31 ...SPS...AF-DV.LS.GQAS.ARIG.LD.R..I.T....AG...DLSIAVQPPGtasl.-
  32 ...TDD...VYDAI.VA.ATGE.VRIE.AR.E..G.D....GGar.I---------.....-
  33 ...KKE...DFRQL.LKlDGQI.IYVD.YG.H..IsT....AP...ILSKHTDSARdpe..S
  34 ...ID-...--IEE.IK.TGDR.IVVD.GN.T..G.V....VK...ILNK------.....-
  35 ...IK-...TPLTS.LP.SGTI.VEVD.GT.A..G.T....LT...IPDEKVNQV-.....-
  36 ...SGF...DPFEQ.IQ.DGDL.VRID.GE.N..G.T....IT...LTPGQA----.....-
  37 ...PER...DLVEE.LS.TGDV.VKL-.LP.G..G.K....VE...V---------.....-
  38 ...SQG...QF-ED.IE.NQKY.LSVR.GP.E..L.L....TS...DEPLPLLEASppqv.-
  39 ...LDA...ETFSR.FS.RAAH.VSID.QN.T..I.K....AD...GVSLAIAPPAtahl.-
  40 ...LSA...AEYAA.LA.MEPS.AEVT.PE.R..L.T....AG...ALSLTLEPLSgetl.-
  41 ...LSA...AEYDR.LA.QQSH.ATIT.AT.H..L.R....AG...DLEVPLTSVAsegl.-
  42 ...APE...AF-AA.LA.RAKT.ARIG.DR.A..I.E....AE...GLTIPVVPPAtval.-
  43 ...VN-...--IDE.IK.DGDI.VVVD.GN.T..G.T....VK...IKEQ------.....-
  44 ...NPE...DFCEA.LGwDGKT.VHIR.GE.L..V.S....--...----------.....-
  45 ...LPP...EFFER.VR.DGYR.VRVH.SD.-..G.L....VE...VLGPGQP---.....-
  46 ...CD-...--IAG.IA.SGDR.IAIRvGE.Q..G.E....AV...IHKA------.....-
  47 ...DDD...VFDTL.YR.CTQP.IQID.AP.HegG.E....AR...I---------.....-
  48 ...CD-...--IAG.IG.DGDV.VAID.ASaD..G.-....--...----------.....-
  49 ...FDV...DPWTV.IQ.TGDY.VKIT.AP.Ka.G.D....EG...IIKIYPKDPArra..E
  50 ...FDA...RLLQA.IA.SGAA.LRLD.PA.A..K.S....IA...LLG-------.....-
  51 ...FRE...SPRSA.VR.TGDV.VELD.GI.S..G.E....LK...VLRRGAGG--.....-
  52 ...LGK...EFLAA.VK.SGSR.VQVK.-E.N..G.E....VI...IED-------.....-
  53 ...LEE...GCVNIdLE.TGAY.DKC-.--.-..-.-....--...----------.....-