# List of top-scoring protein chains for T0357.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1v7lA 163 2.90e-01 1p3rA 160 3.69e+00 b.55.1.2 94065 2g74A 183 4.92e+00 1x83A 189 4.96e+00 1i9aA 182 5.42e+00 1i9aA d.113.1.2 62082 1ppvA 183 5.43e+00 d.113.1.2 104282 1x84A 189 5.49e+00 1hztA 190 5.50e+00 1i9aA d.113.1.2 61459 2etlA 228 5.60e+00 1q54A 183 5.98e+00 d.113.1.2 95860 1hx3A 190 6.07e+00 1i9aA d.113.1.2 61351 1r67A 190 9.00e+00 d.113.1.2 97147 2aa4A 289 1.27e+01 1dkuA 317 1.33e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1giqA 413 1.39e+01 d.166.1.1,d.166.1.1 76224,76225 1iqzA 81 1.60e+01 d.58.1.4 66281 1zunB 434 1.66e+01 1qdmA 478 1.72e+01 1smrA a.64.1.2,b.50.1.2 18141,26838 1qmyA 167 1.89e+01 1qmyA d.3.1.2 37094 1bk4A 337 1.96e+01 1frpA e.7.1.1 42938 1cjcA 460 2.04e+01 1cjcA c.3.1.1,c.4.1.1 30319,30604 1i9wA 390 2.18e+01 b.1.18.4,f.10.1.1 71163,71164 2alaA 391 2.19e+01 1sxjB 323 2.29e+01 a.80.1.1,c.37.1.20 106083,106084 1qolA 173 2.40e+01 1qmyA d.3.1.2 37097 1nxuA 333 2.44e+01 c.122.1.1 86389 1s20A 340 2.46e+01 c.122.1.1 98356 1tr9A 341 2.47e+01 1y65A 342 2.50e+01 1h32B 138 2.58e+01 a.3.1.1 76620 1neu 124 2.93e+01 1neu b.1.1.1 19704 2bwjA 199 3.00e+01 1uwgH 225 3.16e+01 b.1.1.1,b.1.1.2 100115,100116 2bukA 196 3.22e+01 1v4xA 144 3.25e+01 a.1.1.2 108363 1kqfB 294 3.77e+01 d.58.1.5,f.23.22.1 75900,75901 1egjH 220 3.88e+01 1igtB b.1.1.1,b.1.1.2 20501,21457 1zvyA 136 3.89e+01 1sq1A 370 3.94e+01 d.258.1.1 98961 1qdlB 195 4.02e+01 1qdlB c.23.16.1 31437 1yavA 159 4.06e+01 2f1dA 207 4.13e+01 2fieA 338 4.13e+01 2fhyA 374 4.17e+01 1yiqA 689 4.25e+01 1vi4A 174 4.29e+01 c.8.7.1 100731 1ijxA 127 4.46e+01 1ijxA a.141.1.1 62511 1ftaA 337 4.61e+01 1frpA e.7.1.1 42934 1d2gA 292 4.77e+01 1xvaA c.66.1.5 34187 1fj9A 337 5.00e+01 1frpA e.7.1.1 42907 1nuyA 337 5.01e+01 e.7.1.1 86213 2f3bA 338 5.01e+01 1uywH 218 5.02e+01 1yyzA 337 5.06e+01 1xe4A 335 5.34e+01 1fsaA 337 5.38e+01 1frpA e.7.1.1 42903 1kz8A 337 5.38e+01 e.7.1.1 77633 1st3 269 5.39e+01 1gci c.41.1.1 32504 1xvaA 292 5.42e+01 1xvaA c.66.1.5 34183 1rdzA 337 5.42e+01 1frpA e.7.1.1 42882 1levA 337 5.47e+01 e.7.1.1 77911 1ne9A 335 5.80e+01 d.108.1.4,d.108.1.4 91839,91840 1zxoA 291 5.84e+01 1yqzA 438 5.88e+01 1frpA 335 6.04e+01 1frpA e.7.1.1 42875 5fbpA 335 6.05e+01 1frpA e.7.1.1 42873 1ugiA 84 6.12e+01 1ugiA d.17.5.1 38125 1l1qA 186 6.17e+01 c.61.1.1 77653 1udiI 83 6.25e+01 1ugiA d.17.5.1 38124 1ughI 82 6.27e+01 1ugiA d.17.5.1 38133 1gp1A 198 6.30e+01 1gp1A c.47.1.10 33059 1xf8A 335 6.36e+01 2bhtA 303 6.68e+01 2fsjA 346 6.72e+01 1e2xA 243 6.73e+01 1e2xA a.4.5.6,a.78.1.1 16113,18443 1q5pA 269 6.86e+01 c.41.1.1 95903 1c9mA 269 6.90e+01 1gci c.41.1.1 32506 1xrgA 156 7.19e+01 1q0yH 221 7.28e+01 b.1.1.1,b.1.1.2 95521,95522 1nm1A 375 7.37e+01 c.55.1.1,c.55.1.1 80651,80652 1nbwA 607 7.40e+01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1to6A 371 7.55e+01 c.141.1.1 107170 1cteA 254 7.79e+01 1theB d.3.1.1 37058 1dvfD 120 7.84e+01 1mfa b.1.1.1 20107 1theA 260 7.90e+01 1theB d.3.1.1 37056 1yrvA 169 8.04e+01 2cpxA 115 8.05e+01 1lh0A 213 8.14e+01 c.61.1.1 73896 1oroA 213 8.16e+01 1opr c.61.1.1 34093 1f1eA 154 8.35e+01 a.22.1.2 64927 1wyuB 474 8.58e+01 2cd0A 111 8.69e+01 8fabA b.1.1.1 20561 1q1jL 215 8.80e+01 b.1.1.1,b.1.1.2 95585,95586 1sto 213 8.80e+01 1opr c.61.1.1 34092 1bxoA 323 8.90e+01 2er7E b.50.1.2 26805