# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1v7lA 163 6.41e-03 1yqzA 438 8.47e-01 1aquA 297 8.49e-01 1aquA c.37.1.5 31942 1hf2A 210 1.18e+00 1hf2A b.80.3.1,c.102.1.1 60992,60993 1j8mF 297 1.67e+00 1ng1 a.24.13.1,c.37.1.10 62742,62743 1pme 380 1.93e+00 1hcl d.144.1.7 41653 2gfsA 372 2.35e+00 1h1dA 221 3.02e+00 c.66.1.1 83452 1vj0A 380 3.05e+00 b.35.1.2,c.2.1.1 100786,100787 2gsfA 373 4.08e+00 1vi2A 300 4.15e+00 c.2.1.7,c.58.1.5 100726,100727 1a8s 273 4.30e+00 1brt c.69.1.12 34710 1g3mA 294 4.32e+00 c.37.1.5 83268 1mp8A 281 4.78e+00 d.144.1.7 91384 1vi4A 174 4.99e+00 c.8.7.1 100731 1jpaA 312 5.11e+00 d.144.1.7 67011 2b0tA 738 5.46e+00 1pmnA 364 5.51e+00 d.144.1.7 94907 2c30A 321 6.34e+00 1uirA 314 6.47e+00 c.66.1.17 99429 1zoiA 276 6.53e+00 1h0hA 977 6.61e+00 b.52.2.2,c.81.1.1 76435,76436 2b9hA 353 6.71e+00 2fvgA 340 7.32e+00 1vj1A 363 8.43e+00 b.35.1.2,c.2.1.1 100794,100795 1k0hA 117 8.93e+00 b.106.1.2 71975 1zxxA 319 9.96e+00 1zzoA 136 1.02e+01 2bsxA 253 1.06e+01 1qf5A 431 1.07e+01 1adeA c.37.1.10 32212 1xd3A 230 1.08e+01 1in4A 334 1.12e+01 1hqcA a.4.5.11,c.37.1.20 62597,62598 1bkb 136 1.13e+01 1bkb b.34.5.2,b.40.4.5 24609,25341 1oywA 523 1.14e+01 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1cliA 345 1.15e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 2di4A 238 1.15e+01 1om1A 332 1.21e+01 d.144.1.7 93347 1u6rA 380 1.21e+01 1dl2A 511 1.23e+01 1dl2A a.102.2.1 18844 1c30B 382 1.30e+01 c.8.3.1,c.23.16.1 30736,31413 1g3qA 237 1.32e+01 1hyqA c.37.1.10 60237 1gz8A 299 1.33e+01 d.144.1.7 83405 1jztA 246 1.34e+01 c.104.1.1 63319 1l7mA 211 1.35e+01 c.108.1.4 73664 1ymiA 334 1.37e+01 1p4oA 322 1.41e+01 d.144.1.7 87775 2d13A 227 1.46e+01 1ywnA 316 1.48e+01 2df7A 458 1.54e+01 1a9xB 379 1.56e+01 1c3oB c.8.3.1,c.23.16.1 30732,31409 1mx3A 347 1.58e+01 c.2.1.4,c.23.12.1 79638,79639 2evaA 307 1.58e+01 2g76A 335 1.61e+01 1jpzA 473 1.73e+01 a.104.1.1 67069 1ls1A 295 1.74e+01 a.24.13.1,c.37.1.10 78170,78171 2f57A 317 1.77e+01 1qo7A 394 1.80e+01 1qo7A c.69.1.11 34697 1in6A 334 1.81e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1u5uA 374 1.82e+01 1tu5A 746 1.84e+01 1pvdA 537 1.90e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1ojjA 402 1.91e+01 b.29.1.10 93130 2choA 716 1.91e+01 1llfA 534 2.06e+01 c.69.1.17 78094 1wcdJ 441 2.06e+01 1i1qB 192 2.18e+01 1qdlB c.23.16.1 61544 1bg6 359 2.18e+01 1bg6 a.100.1.5,c.2.1.6 18810,30214 1q5xA 161 2.21e+01 c.8.7.1 95947 1qv1A 195 2.34e+01 a.39.1.5 96347 1auoA 218 2.38e+01 1auoA c.69.1.14 34716 1fjhA 257 2.46e+01 1fjhB c.2.1.2 29870 1dleA 298 2.48e+01 1dleA b.47.1.2 26312 1mtzA 293 2.75e+01 c.69.1.7 79467 1hx0A 496 2.75e+01 b.71.1.1,c.1.8.1 61346,61347 2eifA 136 2.76e+01 1bkb b.34.5.2,b.40.4.5 24607,25339 1zjkA 403 2.77e+01 1va4A 279 2.78e+01 c.69.1.12 108458 2gp4A 628 2.88e+01 1rrmA 386 2.92e+01 e.22.1.2 105081 1qpcA 279 2.92e+01 1fgkA d.144.1.7 41685 2btoA 473 2.99e+01 1r64A 481 3.04e+01 b.18.1.20,c.41.1.1 97140,97141 1xttA 216 3.16e+01 1ep3B 262 3.21e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 1j1bA 420 3.22e+01 d.144.1.7 90758 1lzlA 323 3.28e+01 c.69.1.2 78306 1dbiA 280 3.31e+01 1gci c.41.1.1 32543 1gpiA 431 3.33e+01 b.29.1.10 65450 1whi 122 3.33e+01 1whi b.39.1.1 24810 1chmA 401 3.35e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 1uu3A 310 3.36e+01 d.144.1.7 99999 2chnA 716 3.37e+01 1i2kA 269 3.43e+01 e.17.1.1 90661 1y0bA 197 3.49e+01 1fgkA 310 3.57e+01 1fgkA d.144.1.7 41693 1m2xA 223 3.68e+01 d.157.1.1 84764 1c96A 753 3.74e+01 1amj c.8.2.1,c.83.1.1 30727,35403 1d7uA 433 3.86e+01 2dkb c.67.1.4 34439 1oaoC 729 4.01e+01 e.26.1.3 86746 1a8q 274 4.01e+01 1brt c.69.1.12 34702 2aqjA 538 4.06e+01 1dkuA 317 4.14e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1zemA 262 4.16e+01 1rkd 309 4.20e+01 1rkd c.72.1.1 34928 1ek6A 348 4.34e+01 1xel c.2.1.2 29800 1gpr 162 4.38e+01 1gpr b.84.3.1 28267 1yfqA 342 4.40e+01 2frnA 278 4.41e+01 1ku0A 388 4.42e+01 c.69.1.18 72994 1euhA 475 4.46e+01 1euhA c.82.1.1 35369 1lh0A 213 4.50e+01 c.61.1.1 73896 1gpmA 525 4.50e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1efdN 266 4.59e+01 1efdN c.92.2.1 35597 1l6rA 227 4.59e+01 c.108.1.10 77768 1geeA 261 4.65e+01 c.2.1.2 90509 1ca1 370 4.66e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 2fefA 294 4.71e+01 2cunA 410 4.76e+01 1uedA 406 4.79e+01 a.104.1.1 99256 1wraA 308 4.82e+01 1ouoA 210 4.89e+01 d.4.1.6 93554 1rxyA 253 4.92e+01 c.56.2.1 98065 1x8hA 228 5.03e+01 1xdwA 331 5.04e+01 1f2vA 219 5.09e+01 1f2vA c.23.17.1 59627 2b3yA 888 5.12e+01 1q6zA 528 5.26e+01 2f8aA 208 5.27e+01 1w1oA 534 5.35e+01 d.58.32.4,d.145.1.1 109071,109072 2fsjA 346 5.41e+01 1b7yB 785 5.44e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 1o04A 500 5.48e+01 c.82.1.1 86508 1mqoA 227 5.50e+01 d.157.1.1 103846 1m15A 357 5.57e+01 a.83.1.1,d.128.1.2 78368,78369 1yhvA 297 5.69e+01 1qmeA 702 5.77e+01 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 1qauA 112 5.83e+01 1qauA b.36.1.1 24779 1r8nA 185 5.99e+01 b.42.4.1 104851 1ustA 93 6.06e+01 a.4.5.13 99884 1o4sA 389 6.08e+01 c.67.1.1 86620 1m6kA 251 6.20e+01 e.3.1.1 78695 1ru3A 732 6.34e+01 e.26.1.3 97835 2cbiA 594 6.36e+01 1mspA 126 6.40e+01 1mspA b.1.11.2 22333 1u59A 287 6.53e+01 d.144.1.7 107681 1smd 496 6.63e+01 1smd b.71.1.1,c.1.8.1 27768,28755 1rq2A 382 6.87e+01 c.32.1.1,d.79.2.1 105048,105049 1p42A 270 6.91e+01 d.14.1.7,d.14.1.7 87754,87755 3ullA 132 6.91e+01 3ullA b.40.4.3 25282 1s12A 94 6.92e+01 1h32A 261 6.93e+01 a.3.1.8,a.3.1.8 76618,76619 1xbbA 291 7.07e+01 1opjA 293 7.11e+01 d.144.1.7 87230 1udc 338 7.12e+01 1xel c.2.1.2 29785 1rdqE 350 7.20e+01 d.144.1.7 97314 1v95A 130 7.27e+01 c.51.1.1 108435 1zvyA 136 7.31e+01 2a1vA 144 7.37e+01 1i12A 160 7.39e+01 1i21A d.108.1.1 61515 1qh4A 380 7.41e+01 1qh4A a.83.1.1,d.128.1.2 18462,41197 2furA 209 7.50e+01 2azpA 318 7.57e+01 1gteA 1025 7.63e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1duvG 333 7.64e+01 1othA c.78.1.1,c.78.1.1 35228,35229 1t7rA 269 7.67e+01 a.123.1.1 106635 1zbfA 142 7.82e+01 2exrA 524 7.84e+01 1z8gA 372 7.86e+01 1w7lA 422 7.88e+01 c.67.1.1 109226 1uu1A 335 8.01e+01 c.67.1.1 99993 2f4nA 273 8.03e+01 1a41 234 8.17e+01 1a41 d.163.1.2 42174 1xqwA 293 8.26e+01 1t9hA 307 8.29e+01 1nnwA 252 8.32e+01 d.159.1.5 80674 2bdwA 362 8.37e+01 1iz6A 138 8.39e+01 b.34.5.2,b.40.4.5 76976,76977 1vjpA 394 8.42e+01 c.2.1.3,d.81.1.3 100828,100829 2gwhA 298 8.46e+01 1f0lA 535 8.49e+01 1ddt b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 1mrzA 293 8.51e+01 b.43.5.1,c.26.1.3 91452,91453 1kqfA 1015 8.53e+01 b.52.2.2,c.81.1.1 72871,72872 1wp5A 323 8.76e+01 2f9hA 129 8.82e+01 1shyB 551 8.99e+01 b.69.12.1,g.16.2.1 105565,105566