# TARGET T0357 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0357.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 3.34133 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 P 0.050 0.003 0.009 0.011 0.225 0.703 2 K 0.260 0.008 0.024 0.025 0.215 0.468 3 A 0.738 0.007 0.020 0.021 0.081 0.132 4 I 0.903 0.008 0.008 0.014 0.026 0.041 5 I 0.906 0.010 0.004 0.013 0.018 0.049 6 N 0.677 0.011 0.005 0.019 0.167 0.121 7 K 0.165 0.005 0.049 0.039 0.647 0.095 8 K 0.069 0.004 0.045 0.033 0.727 0.122 9 T 0.059 0.011 0.039 0.031 0.750 0.110 10 E 0.153 0.020 0.013 0.033 0.511 0.269 11 T 0.339 0.013 0.016 0.055 0.188 0.389 12 I 0.797 0.015 0.013 0.048 0.044 0.083 13 I 0.887 0.007 0.008 0.045 0.018 0.035 14 A 0.768 0.011 0.009 0.115 0.039 0.059 15 V 0.547 0.004 0.012 0.260 0.073 0.104 16 G 0.299 0.009 0.032 0.238 0.196 0.227 17 A 0.384 0.014 0.075 0.203 0.195 0.129 18 A 0.296 0.039 0.159 0.253 0.112 0.142 19 M 0.145 0.009 0.424 0.241 0.153 0.028 20 A 0.121 0.007 0.212 0.318 0.261 0.082 21 E 0.092 0.013 0.189 0.272 0.283 0.151 22 I 0.217 0.017 0.017 0.027 0.438 0.284 23 P 0.170 0.009 0.016 0.057 0.210 0.538 24 L 0.339 0.025 0.053 0.151 0.186 0.245 25 V 0.429 0.019 0.045 0.178 0.126 0.204 26 E 0.401 0.011 0.056 0.168 0.138 0.226 27 V 0.240 0.010 0.097 0.190 0.215 0.249 28 R 0.187 0.016 0.058 0.165 0.237 0.337 29 D 0.083 0.008 0.034 0.149 0.240 0.486 30 E 0.023 0.002 0.047 0.605 0.163 0.161 31 K 0.035 0.004 0.037 0.717 0.122 0.085 32 F 0.024 0.002 0.047 0.799 0.086 0.043 33 F 0.051 0.002 0.043 0.779 0.076 0.048 34 E 0.071 0.002 0.046 0.810 0.041 0.030 35 A 0.093 0.003 0.027 0.828 0.025 0.024 36 V 0.133 0.009 0.016 0.753 0.063 0.026 37 K 0.137 0.009 0.016 0.524 0.287 0.028 38 T 0.063 0.010 0.014 0.217 0.593 0.102 39 G 0.034 0.002 0.003 0.003 0.712 0.245 40 D 0.236 0.004 0.002 0.001 0.294 0.464 41 R 0.845 0.009 0.001 0.001 0.029 0.117 42 V 0.969 0.002 0.001 0.001 0.006 0.023 43 V 0.979 0.001 0.001 0.001 0.004 0.015 44 V 0.926 0.007 0.001 0.001 0.008 0.058 45 N 0.630 0.020 0.001 0.001 0.257 0.092 46 A 0.026 0.002 0.041 0.001 0.914 0.017 47 D 0.005 0.001 0.038 0.001 0.943 0.011 48 E 0.004 0.001 0.034 0.002 0.952 0.007 49 G 0.103 0.013 0.007 0.003 0.721 0.153 50 Y 0.731 0.048 0.001 0.008 0.033 0.178 51 V 0.926 0.008 0.003 0.009 0.014 0.040 52 E 0.935 0.003 0.003 0.007 0.008 0.045 53 L 0.826 0.005 0.009 0.012 0.020 0.128 54 I 0.425 0.007 0.006 0.021 0.058 0.483 55 E 0.027 0.001 0.001 0.001 0.016 0.955