# List of top-scoring protein chains for T0357.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zvyA 136 7.87e-01 1kqfB 294 1.11e+00 d.58.1.5,f.23.22.1 75900,75901 1iqzA 81 1.44e+00 d.58.1.4 66281 1v7lA 163 2.20e+00 2cp5A 141 7.63e+00 1vs0A 310 8.75e+00 2cxaA 256 1.13e+01 1zcaA 359 1.45e+01 1xfrA 128 1.48e+01 1dqeA 137 1.54e+01 1dqeA a.39.2.1 17388 1p8sA 314 1.57e+01 c.42.1.1 87979 1p8nA 314 1.57e+01 c.42.1.1 87965 2fjyA 142 1.58e+01 1p8mA 314 1.61e+01 c.42.1.1 87962 1p8oA 314 1.61e+01 c.42.1.1 87968 1p8rA 308 1.61e+01 c.42.1.1 87977 1tblA 314 1.61e+01 1tbjA 314 1.61e+01 1t4tA 314 1.61e+01 1ta1A 314 1.62e+01 1p8qA 314 1.62e+01 c.42.1.1 87974 1p8pA 314 1.62e+01 c.42.1.1 87971 1hqxA 323 1.65e+01 1d3vA c.42.1.1 61161 1tbhA 314 1.65e+01 1d3vA 323 1.65e+01 1d3vA c.42.1.1 32559 1hqgA 323 1.66e+01 1d3vA c.42.1.1 61136 1t5fA 314 1.66e+01 2rlaA 323 1.66e+01 1d3vA c.42.1.1 32573 1zpeA 314 1.66e+01 3rlaA 323 1.66e+01 1d3vA c.42.1.1 32564 1ussA 88 1.82e+01 a.4.5.13 99883 1yqaA 87 1.88e+01 1q7hA 153 2.01e+01 b.122.1.1,d.17.6.2 96042,96043 1vyuA 351 2.02e+01 b.34.2.1,c.37.1.1 108914,108915 1vyvA 359 2.07e+01 b.34.2.1,c.37.1.1 108918,108919 2gx9A 129 2.12e+01 1t3lA 337 2.15e+01 b.34.2.1,c.37.1.1 106358,106359 1jj2E 177 2.33e+01 1ffk1 d.141.1.1,d.141.1.1 63089,63090 1vqoE 178 2.33e+01 2gp4A 628 2.35e+01 1wvbA 322 2.97e+01 2aebA 322 3.02e+01 2ftcA 189 3.12e+01 3ullA 132 3.19e+01 3ullA b.40.4.3 25282 1aquA 297 3.38e+01 1aquA c.37.1.5 31942 1ydxA 406 3.40e+01 1ns1A 73 3.42e+01 1ail a.16.1.1 16382 1ail 73 3.43e+01 1ail a.16.1.1 16381 1iweA 457 3.46e+01 c.37.1.10 71486 1ufrA 181 3.52e+01 c.61.1.1 99354 1t0hB 224 3.52e+01 c.37.1.1 106208 2corA 79 3.62e+01 1fbsA 90 3.69e+01 2hts a.4.5.22 16180 1kswA 452 3.80e+01 b.34.2.1,d.93.1.1,d.144.1.7 68860,68861,68862 1fbqA 90 3.93e+01 2hts a.4.5.22 16178 1sglA 209 3.96e+01 d.124.1.1 105536 2gj1A 583 4.03e+01 2gjmA 583 4.06e+01 1ox3A 109 4.08e+01 h.1.17.1 93668 1dl5A 317 4.14e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1i21A 159 4.23e+01 1i21A d.108.1.1 61549 1i12A 160 4.30e+01 1i21A d.108.1.1 61515 1kqfA 1015 4.33e+01 b.52.2.2,c.81.1.1 72871,72872 1ky9A 448 4.35e+01 b.36.1.4,b.47.1.1 73198,73199 3htsB 102 4.47e+01 2hts a.4.5.22 16175 1fltX 95 4.48e+01 1fltX b.1.1.4 21765 1i1dA 161 4.50e+01 1i21A d.108.1.1 61526 1e58A 249 4.52e+01 1qhfA c.60.1.1 59262 1rv6X 100 4.61e+01 b.1.1.4 97914 1qtyT 101 4.65e+01 1fltX b.1.1.4 21769 2hts 92 4.67e+01 2hts a.4.5.22 16174 1a5z 319 4.79e+01 1ceqA c.2.1.5,d.162.1.1 30181,42148 1fbuA 90 4.80e+01 2hts a.4.5.22 16176 1zosA 230 4.89e+01 1wn2A 121 5.03e+01 1tk9A 188 5.07e+01 c.80.1.3 107082 1hzgA 295 5.14e+01 1hzgA d.194.1.1 61436 1xa0A 328 5.17e+01 1hq0A 295 5.21e+01 1hzgA d.194.1.1 61122 2d2zA 261 5.25e+01 2bf5A 98 5.30e+01 2ftcN 96 5.38e+01 2bf2A 102 5.39e+01 1vchA 175 5.64e+01 2cwaA 263 5.73e+01 2aheA 267 5.76e+01 2a4cA 99 6.21e+01 1xhjA 88 6.66e+01 1y43B 173 6.88e+01 1pguA 615 6.91e+01 b.69.4.1,b.69.4.1 88069,88070 2czgA 433 6.93e+01 1i9wA 390 7.00e+01 b.1.18.4,f.10.1.1 71163,71164 2alaA 391 7.03e+01 2cp6A 172 7.14e+01 1z6oM 191 7.30e+01 1jsdA 319 7.43e+01 b.19.1.2 63258 1napA 70 7.60e+01 1tvxA d.9.1.1 37445 1g3mA 294 7.62e+01 c.37.1.5 83268 1hy3A 294 7.63e+01 c.37.1.5 71090 1yzyA 413 7.85e+01 1tvxA 75 7.86e+01 1tvxA d.9.1.1 37441 1tv5A 443 7.88e+01 1zp6A 191 7.89e+01 1f9pA 85 8.35e+01 d.9.1.1 90479 1uxvA 501 8.51e+01 c.82.1.1 108127 1uxtA 501 8.52e+01 c.82.1.1 108125 1thtA 305 8.54e+01 1thtA c.69.1.13 34711 1ky8A 501 8.58e+01 c.82.1.1 77628 2dpmA 284 8.59e+01 2dpmA c.66.1.28 34246 1sq1A 370 8.78e+01 d.258.1.1 98961 1mi2A 73 8.79e+01 1tvxA d.9.1.1 37455