# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1v7lA 163 6.45e-02 2gp4A 628 3.61e-01 1zvyA 136 3.84e-01 1kqfA 1015 6.75e-01 b.52.2.2,c.81.1.1 72871,72872 2napA 723 9.50e-01 2napA b.52.2.2,c.81.1.1 26926,35334 1vs0A 310 1.86e+00 2apjA 260 3.42e+00 1xtoA 311 3.68e+00 1ydxA 406 3.81e+00 1uxtA 501 4.27e+00 c.82.1.1 108125 1i12A 160 4.52e+00 1i21A d.108.1.1 61515 3ullA 132 5.53e+00 3ullA b.40.4.3 25282 2fcbA 173 5.62e+00 2fcbA b.1.1.4,b.1.1.4 21781,21782 1yvhA 329 5.75e+00 1fltX 95 5.76e+00 1fltX b.1.1.4 21765 1yavA 159 5.89e+00 1jsdA 319 6.14e+00 b.19.1.2 63258 1yb5A 351 6.32e+00 1fx2A 235 7.15e+00 1fx2A d.58.29.1 39430 1o88A 353 7.24e+00 b.80.1.1 81178 1iqzA 81 7.49e+00 d.58.1.4 66281 1ivyA 452 7.63e+00 1ivyA c.69.1.5 34654 1pueE 89 7.80e+00 1awcA a.4.5.21 16165 1q7hA 153 8.19e+00 b.122.1.1,d.17.6.2 96042,96043 2gjgA 248 9.26e+00 2be1A 339 9.50e+00 1t0hB 224 9.52e+00 c.37.1.1 106208 1qvcA 145 9.70e+00 3ullA b.40.4.3 25284 1h0hA 977 1.07e+01 b.52.2.2,c.81.1.1 76435,76436 2cxaA 256 1.07e+01 1uv4A 293 1.12e+01 1tk9A 188 1.16e+01 c.80.1.3 107082 1i7nA 309 1.22e+01 c.30.1.5,d.142.1.3 83681,83682 1kblA 873 1.26e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1r6xA 395 1.30e+01 b.122.1.3,c.26.1.5 97167,97168 2cz1B 212 1.30e+01 1yiyA 429 1.32e+01 1yizA 429 1.34e+01 1k3sA 113 1.35e+01 d.198.1.1 68120 1bteA 97 1.43e+01 1bteA g.7.1.3 44463 1kl9A 182 1.48e+01 b.40.4.5 72681 1ustA 93 1.52e+01 a.4.5.13 99884 1zd0A 150 1.57e+01 1aquA 297 1.63e+01 1aquA c.37.1.5 31942 1se8A 301 1.81e+01 b.40.4.3 105448 2bdrA 175 1.82e+01 1owfA 99 1.87e+01 a.55.1.1 87487 1o54A 277 1.90e+01 c.66.1.13 92482 1gyhA 318 1.91e+01 b.67.2.1 70757 2g76A 335 1.92e+01 1qauA 112 1.98e+01 1qauA b.36.1.1 24779 1e58A 249 2.00e+01 1qhfA c.60.1.1 59262 1zeqX 84 2.00e+01 1ti6A 875 2.06e+01 b.52.2.2,c.81.1.1 106974,106975 1xmbA 418 2.09e+01 1oeyJ 107 2.23e+01 d.15.2.2 92804 1y0nA 78 2.25e+01 2bf5A 98 2.31e+01 1e0tA 470 2.37e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 2fp8A 322 2.45e+01 1te7A 103 2.48e+01 1tuoA 464 2.48e+01 1ynpA 317 2.49e+01 1uheA 97 2.49e+01 1ju3A 583 2.51e+01 b.18.1.13,c.69.1.21 67300,67301 1zoiA 276 2.55e+01 2ggcA 263 2.61e+01 1t3iA 420 2.61e+01 c.67.1.3 106354 1xnzA 264 2.62e+01 1dl5A 317 2.67e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1wmmA 145 2.68e+01 1amx 180 2.71e+01 1amx b.2.3.1 22410 1wi1A 126 2.75e+01 1xu9A 286 2.85e+01 1x6oA 174 2.86e+01 b.34.5.2,b.40.4.5 109493,109494 1kqfB 294 2.93e+01 d.58.1.5,f.23.22.1 75900,75901 1vchA 175 3.02e+01 2cwpA 112 3.21e+01 1lgpA 116 3.30e+01 b.26.1.2 73890 1f0lA 535 3.33e+01 1ddt b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 2cb5A 453 3.40e+01 3gcb d.3.1.1 37035 1xx1A 285 3.42e+01 1snnA 227 3.43e+01 d.115.1.2 105821 2bneA 241 3.45e+01 1qbjA 81 3.52e+01 1qbjA a.4.5.19 16155 1ofdA 1520 3.58e+01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1jztA 246 3.59e+01 c.104.1.1 63319 2f2eA 146 3.65e+01 1ir6A 424 3.82e+01 c.107.1.2 71342 1zpsA 138 3.83e+01 1x7dA 350 3.88e+01 1kcqA 104 3.89e+01 d.109.1.1 68449 1dqeA 137 3.99e+01 1dqeA a.39.2.1 17388 2b3gA 123 4.05e+01 2bwvA 440 4.07e+01 1lucB 324 4.10e+01 1lucA c.1.16.1 29548 1xfrA 128 4.24e+01 1r3eA 309 4.33e+01 b.122.1.1,d.265.1.2 96907,96908 1ua4A 455 4.40e+01 c.72.1.3 99128 1nkqA 259 4.49e+01 d.177.1.1 103862 1whzA 70 4.52e+01 1x3eA 165 4.57e+01 1tksA 204 4.64e+01 d.115.1.2 107114 2fb6A 117 4.67e+01 1p99A 295 4.68e+01 c.94.1.1 94384 1y1nA 291 4.68e+01 1fjgE 162 4.82e+01 1pkp d.14.1.1,d.50.1.2 37553,38789 1kb0A 677 4.83e+01 a.3.1.6,b.70.1.1 68378,68379 1bia 321 4.89e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1xovA 326 4.91e+01 2ccjA 205 4.93e+01 1k7jA 206 4.96e+01 d.115.1.1 72103 1a9xB 379 4.99e+01 1c3oB c.8.3.1,c.23.16.1 30732,31409 2fxqA 264 5.03e+01 1bg6 359 5.04e+01 1bg6 a.100.1.5,c.2.1.6 18810,30214 1zvhA 134 5.15e+01 1php 394 5.19e+01 16pk c.86.1.1 35452 2f1rA 171 5.23e+01 2g8lA 299 5.28e+01 1uu1A 335 5.35e+01 c.67.1.1 99993 1k4iA 233 5.43e+01 d.115.1.2 72056 1v6tA 255 5.50e+01 2gu2A 312 5.53e+01 1upsA 420 5.55e+01 2a19A 175 5.55e+01 2fh1A 344 5.69e+01 1df7A 159 5.70e+01 3dfr c.71.1.1 34885 1r17A 343 5.73e+01 b.2.3.4,b.2.3.4 96796,96797 1svy 114 5.77e+01 1svy d.109.1.1 40831 1f2tB 148 5.82e+01 1f2tB 1jb0D 138 5.82e+01 1jb0D d.187.1.1 62823 1jsmA 325 5.83e+01 b.19.1.2 63264 1ad2 228 5.84e+01 1ad2 e.24.1.1 43353 1n9lA 109 5.99e+01 d.110.3.6 85468 1zosA 230 6.08e+01 1uebA 184 6.17e+01 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 1ugpB 226 6.31e+01 b.34.4.4 107832 1rylA 167 6.33e+01 d.276.1.1 105124 1c30B 382 6.52e+01 c.8.3.1,c.23.16.1 30736,31413 1y43B 173 6.56e+01 1fdr 248 6.56e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1ybdA 239 6.80e+01 2bokA 241 6.81e+01 2gm5A 139 6.84e+01 1vkyA 347 7.05e+01 e.53.1.1 108696 2g50A 530 7.17e+01 2gs5A 198 7.17e+01 2alaA 391 7.21e+01 2plt 98 7.24e+01 1plc b.6.1.1 22862 1k7cA 233 7.25e+01 c.23.10.4 68267 1wvgA 359 7.28e+01 1h8eH 146 7.36e+01 1e79H b.93.1.1 60757 1yzyA 413 7.36e+01 2d9bA 109 7.38e+01 1rqpA 299 7.38e+01 b.141.1.1,c.132.1.1 97754,97755 1qxmA 300 7.38e+01 b.42.2.1,b.42.2.1 96533,96534 2amhA 207 7.39e+01 1xcrA 316 7.44e+01 1r7lA 110 7.46e+01 d.277.1.1 104837 1zymA 258 7.47e+01 1zymA a.60.10.1,c.8.1.2 18110,30705 2ha8A 184 7.60e+01 1xocA 520 7.64e+01 1vpjA 192 7.68e+01 1luzA 88 7.69e+01 b.40.4.5 74271 1xiwB 79 7.79e+01 1sglA 209 7.83e+01 d.124.1.1 105536 1sq5A 308 8.07e+01 c.37.1.6 105882 1tf5A 844 8.11e+01 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 1tvxA 75 8.16e+01 1tvxA d.9.1.1 37441 1vehA 92 8.19e+01 1e5rA 290 8.25e+01 1e5rA b.82.2.4 59276 1ou8A 111 8.28e+01 b.136.1.1 93543 1j5pA 253 8.36e+01 d.81.1.3,c.2.1.3 71577,83092 2h88A 621 8.43e+01 2g09A 297 8.50e+01 1gmlA 178 8.52e+01 c.8.5.2 70273 1rkxA 357 8.53e+01 c.2.1.2 97631 1t5oA 351 8.53e+01 c.124.1.5 106459 1x13A 401 8.56e+01 1xmkA 79 8.58e+01 2b5iD 217 8.59e+01 1tuaA 191 8.66e+01 d.51.1.1,d.51.1.1 107321,107322 1j58A 385 8.75e+01 b.82.1.2 71531 1zaiA 363 8.77e+01 1bkb 136 8.87e+01 1bkb b.34.5.2,b.40.4.5 24609,25341 1gc0A 398 8.87e+01 c.67.1.3 70168 1ruwA 69 8.88e+01 2c71A 216 8.92e+01 1kopA 223 8.97e+01 2cba b.74.1.1 27966