# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1v7lA 163 1.85e-01 1zvyA 136 6.67e-01 3ullA 132 1.08e+00 3ullA b.40.4.3 25282 1iqzA 81 1.41e+00 d.58.1.4 66281 1yfqA 342 1.79e+00 2gx9A 129 2.70e+00 1pguA 615 3.05e+00 b.69.4.1,b.69.4.1 88069,88070 2c5kT 95 3.25e+00 1d3vA 323 3.68e+00 1d3vA c.42.1.1 32559 1q7hA 153 5.57e+00 b.122.1.1,d.17.6.2 96042,96043 1hyxH 224 5.84e+00 1igtB b.1.1.1,b.1.1.2 20167,21191 1o54A 277 5.99e+00 c.66.1.13 92482 2aebA 322 6.20e+00 1x3eA 165 6.73e+00 1uv4A 293 8.54e+00 1z4hA 66 9.75e+00 1aquA 297 1.02e+01 1aquA c.37.1.5 31942 1ffyA 917 1.08e+01 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 2gsfA 373 1.10e+01 1wn2A 121 1.10e+01 1ivyA 452 1.18e+01 1ivyA c.69.1.5 34654 1vqoL 165 1.18e+01 2gjgA 248 1.21e+01 2fxqA 264 1.23e+01 1qvcA 145 1.38e+01 3ullA b.40.4.3 25284 1i12A 160 1.47e+01 1i21A d.108.1.1 61515 1rkqA 282 1.52e+01 c.108.1.10 97621 1mwpA 96 1.52e+01 1mwpA d.170.2.1 42453 2bdwA 362 1.56e+01 1sur 215 1.61e+01 1sur c.26.2.2 31620 1ytaA 180 1.68e+01 1op3H 225 1.74e+01 b.1.1.1,b.1.1.2 87208,87209 1s2dA 167 1.76e+01 c.23.14.1 98377 1btn 106 1.91e+01 1btn b.55.1.1 26952 1wmmA 145 2.04e+01 1zeqX 84 2.04e+01 1lr0A 129 2.13e+01 d.212.1.1 74213 1ryiA 382 2.15e+01 1yavA 159 2.18e+01 1szwA 379 2.29e+01 d.265.1.4 99047 2f2sA 406 2.29e+01 1n08A 163 2.31e+01 b.43.5.1 79730 1yvhA 329 2.37e+01 1whzA 70 2.39e+01 1k3sA 113 2.39e+01 d.198.1.1 68120 1se8A 301 2.44e+01 b.40.4.3 105448 2alaA 391 2.57e+01 3htsB 102 2.59e+01 2hts a.4.5.22 16175 1c30B 382 2.65e+01 c.8.3.1,c.23.16.1 30736,31413 1u0qA 125 2.71e+01 1vchA 175 2.74e+01 1a9xB 379 2.93e+01 1c3oB c.8.3.1,c.23.16.1 30732,31409 1ywnA 316 3.02e+01 2bjqA 345 3.05e+01 2plc 274 3.32e+01 2plc c.1.18.2 29614 1zx8A 136 3.34e+01 1zd0A 150 3.42e+01 1x6oA 174 3.44e+01 b.34.5.2,b.40.4.5 109493,109494 1qauA 112 3.52e+01 1qauA b.36.1.1 24779 1mp8A 281 3.54e+01 d.144.1.7 91384 1pk6A 133 3.60e+01 b.22.1.1 94801 1qpcA 279 3.65e+01 1fgkA d.144.1.7 41685 1sqnA 261 3.80e+01 a.123.1.1 105944 1xovA 326 3.87e+01 1szhA 161 3.88e+01 a.226.1.1 106157 1z6oM 191 3.90e+01 2as0A 396 3.98e+01 1xmbA 418 4.16e+01 1ra0A 430 4.23e+01 1ocsA 162 4.32e+01 d.189.1.1 92776 1tvxA 75 4.44e+01 1tvxA d.9.1.1 37441 1rm6C 161 4.58e+01 1wyuB 474 4.80e+01 1yn8A 59 4.89e+01 1gpr 162 5.11e+01 1gpr b.84.3.1 28267 2napA 723 5.34e+01 2napA b.52.2.2,c.81.1.1 26926,35334 1nlbH 218 5.36e+01 b.1.1.1,b.1.1.2 80621,80622 2ha8A 184 5.42e+01 2absA 383 5.54e+01 2bibA 547 5.63e+01 1k0hA 117 5.64e+01 b.106.1.2 71975 1oaqH 121 5.70e+01 b.1.1.1 92707 2gu2A 312 5.77e+01 1kqfA 1015 5.82e+01 b.52.2.2,c.81.1.1 72871,72872 2auwA 170 5.88e+01 1zvhA 134 5.91e+01 2gp4A 628 6.06e+01 1mh1 186 6.07e+01 1eesA c.37.1.8 32002 1f2tB 148 6.09e+01 1f2tB 1vkyA 347 6.12e+01 e.53.1.1 108696 2dbnA 461 6.13e+01 1mqkH 127 6.21e+01 b.1.1.1 85053 2ew0A 192 6.27e+01 1qxmA 300 6.35e+01 b.42.2.1,b.42.2.1 96533,96534 1qysA 106 6.45e+01 k.41.1.1 96603 1wt4A 73 6.49e+01 1p35A 299 6.53e+01 1p35A b.28.1.1 23925 2crvA 120 6.65e+01 1nkqA 259 6.68e+01 d.177.1.1 103862 1wkrA 340 6.74e+01 b.50.1.2 109395 1l6rA 227 6.77e+01 c.108.1.10 77768 1g3mA 294 6.81e+01 c.37.1.5 83268 2herA 368 6.81e+01 1vqoE 178 6.87e+01 1kopA 223 6.96e+01 2cba b.74.1.1 27966 1v0wA 506 7.12e+01 d.136.1.2,d.136.1.2 108220,108221 1lgpA 116 7.13e+01 b.26.1.2 73890 1e58A 249 7.15e+01 1qhfA c.60.1.1 59262 1v30A 124 7.23e+01 1q3eA 207 7.43e+01 b.82.3.2 95669 1bkb 136 7.45e+01 1bkb b.34.5.2,b.40.4.5 24609,25341 1ouvA 273 7.46e+01 a.118.18.1 93570 1xtoA 311 7.49e+01 1ugpB 226 7.50e+01 b.34.4.4 107832 1q35A 320 7.57e+01 c.94.1.1 95661 1ydxA 406 7.63e+01 1hg7A 66 7.69e+01 1msi b.85.1.1 28280 2b5iD 217 7.77e+01 1rcqA 357 8.06e+01 b.49.2.2,c.1.6.1 104882,104883 1iv8A 720 8.18e+01 b.71.1.1,c.1.8.1 76842,76843 1t46A 313 8.18e+01 d.144.1.7 106397 3il8 72 8.22e+01 1tvxA d.9.1.1 37356 1ail 73 8.27e+01 1ail a.16.1.1 16381 1ylnA 252 8.54e+01 1uebA 184 8.99e+01 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784