Best Alignments for T0356

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1fcyA/T0356-1fcyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1fcyA/T0356-1fcyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.3141e+002.24e-03 2lbd a.123.1.1
1wqaA/T0356-1wqaA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wqaA/T0356-1wqaA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.6844e+002.04e+03
1ri7A/T0356-1ri7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ri7A/T0356-1ri7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.9453e+001.98e-07 a.4.5.32
d.58.4.2
1pvvA/T0356-1pvvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1pvvA/T0356-1pvvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.7162e+001.84e-07 c.78.1.1
c.78.1.1
1wduA/T0356-1wduA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wduA/T0356-1wduA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.0787e+001.14e-07 d.151.1.1
2gj8A/T0356-2gj8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gj8A/T0356-2gj8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.6959e+001.93e-05
1vjeA/T0356-1vjeA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vjeA/T0356-1vjeA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1528e+013.45e-07 d.185.1.2
1w1wA/T0356-1w1wA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1w1wA/T0356-1w1wA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1892e+011.08e-06
2g5cA/T0356-2g5cA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2g5cA/T0356-2g5cA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2193e+011.37e-08
1jmtA/T0356-1jmtA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1jmtA/T0356-1jmtA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2658e+017.77e-06 d.58.7.3

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001