# List of top-scoring protein chains for T0356.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wqaA 455 5.87e+00 1k8rB 110 7.10e+00 d.15.1.5 72180 2fu0A 160 9.89e+00 1ybyA 215 1.09e+01 1dekA 241 1.14e+01 1dekA c.37.1.1 31842 1i35A 95 1.23e+01 d.15.1.5 66017 1j0dA 341 1.29e+01 c.79.1.1 83902 1fd0A 235 1.33e+01 a.123.1.1 76164 1fcyA 236 1.33e+01 2lbd a.123.1.1 19282 1exaA 246 1.36e+01 2lbd a.123.1.1 19285 2lbd 267 1.36e+01 2lbd a.123.1.1 19287 1lb8A 263 2.17e+01 c.94.1.1 73800 1p1wA 263 2.19e+01 c.94.1.1 87713 1f2dA 341 2.38e+01 1f2dA c.79.1.1 35298 1j0eA 341 2.39e+01 c.79.1.1 83906 1xapA 267 2.48e+01 1xdkB 303 2.61e+01 1ftkA 279 2.97e+01 1gr2A c.94.1.1 35819 2fswA 107 3.11e+01 1dkfB 235 3.27e+01 2lbd a.123.1.1 19281 1lbcA 263 3.73e+01 c.94.1.1 73805 2b7kA 200 3.77e+01 2anjA 263 3.85e+01 1ymqA 261 3.96e+01 1lbbA 263 3.98e+01 c.94.1.1 73804 1s1iV 148 3.99e+01 i.1.1.1 105196 1mqdA 261 4.00e+01 c.94.1.1 85049 1mqiA 263 4.01e+01 c.94.1.1 91398 1p1oA 263 4.04e+01 c.94.1.1 87699 1mqhA 263 4.12e+01 c.94.1.1 91397 1m5dA 263 4.13e+01 c.94.1.1 78641 2eueA 275 4.23e+01 2fh9A 274 4.23e+01 1tpwA 247 4.45e+01 1amk c.1.1.1 28449 1tpvA 247 4.47e+01 1amk c.1.1.1 28443 1avaA 403 4.50e+01 1jdc b.71.1.1,c.1.8.1 27797,28784 1vimA 200 4.63e+01 c.80.1.3 100758 1tpc1 247 4.81e+01 1amk 2fjbA 643 4.95e+01 1jnrA 643 4.95e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 2ahoA 414 4.99e+01 1spqA 247 5.10e+01 c.1.1.1 105878 1tph1 247 5.11e+01 1amk 1su5A 247 5.13e+01 c.1.1.1 106020 1of5B 184 5.17e+01 d.17.4.2 86934 1sw7A 248 5.18e+01 c.1.1.1 106073 1hd0A 75 5.21e+01 1ha1 d.58.7.1 39188 1sw3A 248 5.24e+01 c.1.1.1 106065 1tpuA 247 5.27e+01 1amk c.1.1.1 28441 1ssdA 247 5.38e+01 c.1.1.1 105979 1sw0A 248 5.41e+01 c.1.1.1 106060 1sq7A 247 5.41e+01 c.1.1.1 105886 1xrjA 261 5.55e+01 1uj2A 252 5.55e+01 c.37.1.6 99452 1tpb1 247 5.56e+01 1amk 1y9jA 159 5.70e+01 2fv1A 377 5.79e+01 1szqA 483 5.93e+01 e.44.1.1 99045 1bvwA 360 5.95e+01 1bvwA c.6.1.1 30668 1ocjA 362 5.95e+01 c.6.1.1 86801 1gz1A 362 5.95e+01 c.6.1.1 76405 2bvwA 362 5.96e+01 1bvwA c.6.1.1 30666 1oc7A 364 5.96e+01 c.6.1.1 86794 1yf9A 171 6.25e+01 1zu4A 320 6.30e+01 2u1a 88 6.51e+01 2u1a d.58.7.1 39164 1pybA 111 6.77e+01 b.40.4.4 95330 1vkhA 273 7.06e+01 c.69.1.32 108662 2fuzA 377 7.06e+01 1fps 348 7.69e+01 1uby a.128.1.1 19436 2f3oA 776 7.92e+01 1fzyA 149 7.94e+01 d.20.1.1 65072 1exzA 141 7.97e+01 1exzA a.26.1.2 16877 2gj8A 172 8.17e+01 1scfA 273 8.33e+01 1exzA a.26.1.2 16873 1rflA 172 8.53e+01 c.37.1.8 97384 2an9A 207 8.76e+01 1di1A 300 8.83e+01 1di1A a.128.1.4 19446 1s96A 219 8.95e+01 c.37.1.1 98740 1v7pC 200 8.97e+01 c.62.1.1 108408