# List of top-scoring protein chains for t04-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1tcvA 287 6.63e+00 2gzaA 361 7.15e+00 7odcA 424 9.30e+00 7odcA b.49.2.3,c.1.6.1 26488,28650 1ojxA 263 9.57e+00 c.1.10.1 93164 1b8oA 284 9.84e+00 1b8oA c.56.2.1 33762 1xwyA 264 1.18e+01 1ypxA 375 1.20e+01 1tqjA 230 1.24e+01 c.1.2.2 107228 1suwA 249 1.78e+01 e.52.1.1 106027 1eceA 358 1.81e+01 1eceA c.1.8.3 28813 1z0sA 278 1.99e+01 1w8sA 263 1.99e+01 1wduA 245 2.06e+01 d.151.1.1 109286 1uslA 170 2.17e+01 c.121.1.1 99871 1bqk 124 2.18e+01 1bqk b.6.1.1 22889 1qe5A 266 2.35e+01 1b8oA c.56.2.1 33784 1dar 691 2.53e+01 1dar b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1 25707,32142,37547,39300 1qwgA 251 2.53e+01 c.1.27.1 96473 1o66A 275 2.59e+01 c.1.12.8 92547 2av4A 162 2.68e+01 1t7lA 766 2.70e+01 1ynpA 317 2.75e+01 1sjiA 350 2.84e+01 1v6tA 255 2.86e+01 1izcA 339 2.88e+01 c.1.12.5 83838 2prd 174 2.98e+01 2prd b.40.5.1 25435 1kicA 339 2.99e+01 c.70.1.1 72510 2bznA 351 3.09e+01 1f5vA 240 3.09e+01 1bkjA d.90.1.1 40255 1r5lA 262 3.12e+01 a.5.3.1,c.13.1.1 97099,97100 1epxA 370 3.16e+01 1fbaA c.1.10.1 29150 1o7tA 309 3.25e+01 c.94.1.1 86645 1vrpA 381 3.27e+01 1w1wA 430 3.31e+01 1sg4A 260 3.40e+01 1f35A 162 3.40e+01 1f35A b.94.1.1 59628 1j6oA 268 3.40e+01 c.1.9.12 77088 1d8wA 426 3.45e+01 1de5A c.1.15.2 29394 1ws0A 156 3.54e+01 1xl7A 612 3.59e+01 1h65A 270 3.67e+01 c.37.1.8 65640 1ru3A 732 3.69e+01 e.26.1.3 97835 2c6qA 351 3.73e+01 1sk4A 163 3.83e+01 d.118.1.1 105664 1mg7A 417 3.85e+01 d.14.1.6,d.58.26.6 84954,84955 2bs9A 503 3.91e+01 2bfgA 503 3.94e+01 1k3rA 268 4.06e+01 b.40.4.10,c.116.1.2 72018,72019 1pvvA 315 4.09e+01 c.78.1.1,c.78.1.1 95190,95191 1a6q 382 4.12e+01 1a6q a.159.1.1,d.219.1.1 75801,75802 1wqaA 455 4.17e+01 1vcvA 226 4.17e+01 1obwA 175 4.18e+01 2prd b.40.5.1 25416 1u1hA 765 4.39e+01 c.1.22.2,c.1.22.2 107580,107581 1sviA 195 4.57e+01 c.37.1.8 106048 2faoA 309 4.73e+01 1e9rA 437 4.81e+01 c.37.1.11 64827 1wz8A 264 4.82e+01 1innA 166 4.88e+01 1j98A d.185.1.2 62608 1xx4A 261 4.94e+01 1vjeA 166 5.26e+01 d.185.1.2 100807 1pyfA 312 5.37e+01 c.1.7.1 95334 1aqb 183 5.39e+01 1aqb b.60.1.1 27084 1fm0E 150 5.42e+01 1fmaE d.41.5.1 38629 2f2hA 773 5.45e+01 1slqA 278 5.51e+01 f.47.1.1 105719 1eyeA 280 5.59e+01 1aj2 c.1.21.1 29672 2gj8A 172 5.62e+01 1kt6A 183 5.68e+01 b.60.1.1 84466 1vlwA 217 5.73e+01 c.1.10.1 108868 1xw8A 252 5.74e+01 1jb7B 260 5.76e+01 1otcB b.40.4.3 62839 1avqA 228 5.87e+01 1avqA c.52.1.13 33326 1rpxA 230 5.90e+01 1rpxA c.1.2.2 28536 1q45A 391 5.91e+01 c.1.4.1 95780 1i40A 175 6.00e+01 b.40.5.1 66024 2gzxA 265 6.10e+01 1hbq 183 6.16e+01 1aqb b.60.1.1 27078 1auiB 169 6.28e+01 1auiB a.39.1.5 17325 1k0rA 366 6.31e+01 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 67961,67962,67963,67964 1ub3A 220 6.36e+01 c.1.10.1 88395 1kk1A 410 6.38e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 2asbA 251 6.43e+01 1su4A 994 6.47e+01 b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1 98993,98994,98995,98996 1fcyA 236 6.53e+01 2lbd a.123.1.1 19282 1xc1A 309 6.75e+01 c.94.1.1 109543 1qh4A 380 6.79e+01 1qh4A a.83.1.1,d.128.1.2 18462,41197 1jilA 420 6.83e+01 c.26.1.1 66745 1geqA 248 6.87e+01 2tysA c.1.2.4 28589 2hvm 273 6.96e+01 1cnv c.1.8.5 28985 1q2lA 939 6.98e+01 1zd9A 188 7.23e+01 1zsxA 347 7.28e+01 1kqzA 273 7.30e+01 c.1.8.5 68844 1t9xA 1049 7.32e+01 1r7aA 504 7.40e+01 b.71.1.1,c.1.8.1 97192,97193 1q7zA 566 7.40e+01 c.1.21.2,c.1.26.1 96090,96091 1k7jA 206 7.47e+01 d.115.1.1 72103 1w3iA 293 7.58e+01 c.1.10.1 109152 2fwtA 125 7.59e+01 1wohA 305 7.64e+01 c.42.1.1 109446 1iq8A 582 7.92e+01 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 2kfnA 605 7.94e+01 1xwl c.55.3.5,e.8.1.1 33682,42975 1lmeA 176 7.96e+01 d.167.1.1 84629 2bexA 460 7.99e+01 1ha3A 405 8.00e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 60869,60870,60871 1d3yA 301 8.17e+01 1d3yA e.12.1.1 43252 7aatA 401 8.23e+01 1ajsA c.67.1.1 34250 1zndA 174 8.28e+01 1u2xA 474 8.31e+01 c.72.1.3 107622 1e6yC 247 8.35e+01 1mroC d.58.31.1 39441 1pixA 587 8.52e+01 c.14.1.4 94708 1cl8A 276 8.54e+01 1ckqA c.52.1.1 33230 2aebA 322 8.57e+01 1k2fA 190 8.58e+01 b.8.1.2 68054 2ajrA 331 8.74e+01 2bitX 165 8.74e+01 2bcoA 350 8.80e+01 1rfmA 344 8.83e+01 c.122.1.1 97385 1tufA 434 8.87e+01 b.49.2.3,c.1.6.1 107335,107336 1em8A 147 8.97e+01 c.128.1.1 90457