# List of top-scoring protein chains for T0356.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1lxjA 104 1.62e+00 d.58.48.1 84736 1nz9A 58 2.77e+00 b.34.5.4 92364 1m1hA 248 4.18e+00 b.114.1.1,d.58.42.1 78415,78416 1nwyT 237 5.78e+00 i.1.1.2 86364 1yl3V 253 5.86e+00 2fbjH 220 8.53e+00 1igtB b.1.1.1,b.1.1.2 19851,20955 1zorA 399 1.05e+01 2es9A 115 1.13e+01 1o8uA 257 1.23e+01 c.14.1.3 81194 1go3F 107 1.43e+01 a.60.8.2 65407 1mv8A 436 1.61e+01 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1k1gA 131 1.63e+01 d.51.1.1 68015 1cc1L 498 1.63e+01 1h2rL e.18.1.1 43301 1tvmA 113 1.70e+01 1szoA 257 1.74e+01 c.14.1.3 106164 1wblA 241 1.79e+01 1led b.29.1.1 24052 1wbfA 242 1.80e+01 1led b.29.1.1 24050 1ogyB 130 1.81e+01 a.138.1.3 92954 1lwjA 441 1.87e+01 b.71.1.1,c.1.8.1 74303,74304 2an1A 292 2.01e+01 2ag9A 164 2.24e+01 2ag4A 164 2.46e+01 1n2mA 165 2.47e+01 d.155.1.2 85278 1xc3A 302 2.52e+01 1aim 215 2.55e+01 1cs8A d.3.1.1 37044 1me4A 215 2.67e+01 d.3.1.1 79023 1j88A 172 2.84e+01 2fcbA b.1.1.4,b.1.1.4 62717,62718 1j87A 172 2.85e+01 2fcbA b.1.1.4,b.1.1.4 62715,62716 1f2qA 176 2.87e+01 2fcbA b.1.1.4,b.1.1.4 21789,21790 1oe4A 247 2.99e+01 c.18.1.3 86895 1m54A 363 3.04e+01 c.79.1.1 74463 1fxjA 331 3.11e+01 1fwyA b.81.1.4,c.68.1.5 28062,34520 1pnsP 83 3.12e+01 i.1.1.1 88183 1fjgP 88 3.23e+01 1emwA d.27.1.1 38444 2fxaA 207 3.25e+01 1g66A 207 3.26e+01 1bs9 c.69.1.30 31329 1z05A 429 3.41e+01 1efpB 252 3.46e+01 1efvB c.26.2.3 31636 1jbqA 435 3.50e+01 1oasA c.79.1.1 62850 2ch8A 201 3.53e+01 1ww9A 392 3.85e+01 1f6aA 176 3.92e+01 2fcbA b.1.1.4,b.1.1.4 21791,21792 2azpA 318 4.06e+01 1hv9A 456 4.19e+01 1fwyA b.81.1.4,c.68.1.5 28060,34518 1ml5S 91 4.72e+01 i.1.1.1 79274 1g38A 393 4.81e+01 2admA c.66.1.27 60235 1aqjA 421 4.89e+01 2admA c.66.1.27 34242 2admA 421 4.89e+01 2admA c.66.1.27 34238 1n1qA 149 4.95e+01 a.25.1.1 85260 1pmr 80 5.07e+01 1ghj b.84.1.1 28233 1mcpH 222 5.16e+01 1igtB b.1.1.1,b.1.1.2 19859,20959 1xi3A 215 5.17e+01 c.1.3.1 109601 1g13A 162 5.18e+01 1g13A b.95.1.1 60194 1yrzA 528 5.18e+01 1klo 162 5.35e+01 1klo g.3.11.2,g.3.11.2,g.3.11.2 44326,44327,44328 1npeB 164 5.68e+01 g.3.11.2,g.3.11.2,g.3.11.2 92033,92034,92035 1k4mA 213 5.73e+01 c.26.1.3 77258 1r71A 178 6.16e+01 a.4.14.1 104823 1mtpA 323 6.25e+01 e.1.1.1 85107 2g0cA 76 6.42e+01 1r82A 283 6.77e+01 c.68.1.9 97217 1lzjA 292 6.89e+01 c.68.1.9 74352 1zizA 293 6.89e+01 2bi7A 384 6.95e+01 1vztA 289 7.00e+01 1ez0A 510 7.04e+01 1eyyA c.82.1.1 35385 1o13A 136 7.05e+01 c.55.5.1 80762 1tbd 134 7.18e+01 2tbd d.89.1.1 40240 1sngA 370 7.31e+01 2apoA 357 7.65e+01 1z1dB 131 7.79e+01 1vzuA 289 7.81e+01 c.68.1.9 108973 1r88A 280 7.84e+01 c.69.1.3 97219 1o7qA 289 7.92e+01 c.68.1.9 92626 1o7oA 289 7.99e+01 c.68.1.9 92624 1kamA 194 7.99e+01 c.26.1.3 72254 1hqkA 154 8.11e+01 c.16.1.1 65902 1g8oA 310 8.12e+01 1g8oA c.68.1.9 60375 1mh6A 125 8.23e+01 d.32.1.2 79116 1ewjA 126 8.25e+01 1ecsA d.32.1.2 59526 1yal 218 8.72e+01 1cs8A d.3.1.1 37025 1ecsA 126 8.90e+01 1ecsA d.32.1.2 59407 1f0iA 504 9.00e+01 1f0iA d.136.1.2,d.136.1.2 59566,59567