# List of top-scoring protein chains for t2k-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ejeA 192 6.84e-01 1ejeA b.45.1.2 25757 2bzlA 325 2.07e+00 1iqsA 88 2.12e+00 d.214.1.1 71278 1a6q 382 2.14e+00 1a6q a.159.1.1,d.219.1.1 75801,75802 1u0tA 307 3.93e+00 e.52.1.1 107567 1tbd 134 4.21e+00 2tbd d.89.1.1 40240 1ww9A 392 4.31e+00 1wxcA 281 5.59e+00 1w78A 422 6.74e+00 2tbd 134 7.74e+00 2tbd d.89.1.1 40241 1v0wA 506 7.81e+00 d.136.1.2,d.136.1.2 108220,108221 1u8zA 168 8.22e+00 1k4mA 213 9.79e+00 c.26.1.3 77258 1f0iA 504 9.82e+00 1f0iA d.136.1.2,d.136.1.2 59566,59567 1o22A 170 1.12e+01 d.238.1.1 86557 1k1gA 131 1.25e+01 d.51.1.1 68015 1przA 252 1.36e+01 d.265.1.3 95064 3ullA 132 1.45e+01 3ullA b.40.4.3 25282 2fsjA 346 1.49e+01 1wleA 501 1.50e+01 1oj7A 408 1.56e+01 e.22.1.2 103971 1ejbA 168 1.59e+01 1rvv1 c.16.1.1 59417 821p 166 1.71e+01 1ctqA c.37.1.8 31969 5p21 166 1.71e+01 1ctqA c.37.1.8 31966 2hnp 321 1.73e+01 1pty c.45.1.2 32678 1aax 321 1.73e+01 1pty c.45.1.2 32657 2fliA 220 1.74e+01 2cu1A 103 1.82e+01 2a9kA 187 1.83e+01 1ihjA 98 1.87e+01 1pdr b.36.1.1 62382 1yreA 197 1.91e+01 1eeoA 321 1.91e+01 1pty c.45.1.2 32655 1nh1A 330 1.95e+01 e.45.1.1 91871 1vm7A 311 2.01e+01 c.72.1.1 108884 1ykfA 352 2.02e+01 1pedA b.35.1.2,c.2.1.1 24757,29773 2h2tB 175 2.03e+01 1ctqA 166 2.11e+01 1ctqA c.37.1.8 31965 1hrhA 136 2.11e+01 1rthA c.55.3.1 33577 1i0rA 169 2.11e+01 1i0rA b.45.1.2 61489 1i0sA 169 2.11e+01 1i0rA b.45.1.2 61491 1jfvA 131 2.17e+01 c.44.1.1 66654 1g7fA 298 2.18e+01 1pty c.45.1.2 60330 1ptvA 321 2.21e+01 1pty c.45.1.2 32665 1jzuA 157 2.27e+01 b.60.1.1 84271 1vb5A 276 2.31e+01 1a5y 330 2.33e+01 1pty c.45.1.2 32673 2cuaA 135 2.34e+01 2cuaA b.6.1.2 23039 1hrdA 449 2.36e+01 1k89 c.2.1.7,c.58.1.1 30219,33867 1gnhA 206 2.38e+01 1sacA b.29.1.5 24252 1fxjA 331 2.39e+01 1fwyA b.81.1.4,c.68.1.5 28062,34520 1nvmB 312 2.40e+01 c.2.1.3,d.81.1.1 86251,86252 1ehkB 168 2.41e+01 2cuaA b.6.1.2,f.17.2.1 23041,43625 1mkyA 439 2.44e+01 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 2aq8A 269 2.60e+01 1euvB 86 2.63e+01 1a5r d.15.1.1 37598 1aup 449 2.72e+01 1k89 c.2.1.7,c.58.1.1 30222,33870 1fwyA 331 2.73e+01 1fwyA b.81.1.4,c.68.1.5 28064,34522 1oaoA 674 2.74e+01 e.26.1.2 86744 1ujpA 271 2.76e+01 c.1.2.4 99462 2evwX 166 2.76e+01 2fg9A 178 2.78e+01 1kgsA 225 2.80e+01 a.4.6.1,c.23.1.1 68596,68597 1v5eA 590 2.80e+01 2a3nA 355 2.81e+01 1w7lA 422 2.85e+01 c.67.1.1 109226 1hv9A 456 2.89e+01 1fwyA b.81.1.4,c.68.1.5 28060,34518 1ak2 233 2.92e+01 1zin c.37.1.1,g.41.2.1 31894,45195 1xppA 115 2.96e+01 1nwwA 149 2.97e+01 d.17.4.8 86306 2djkA 133 2.99e+01 1ukuA 102 2.99e+01 d.58.5.2 99533 1pa1A 310 3.00e+01 c.45.1.2 94404 1pty 321 3.02e+01 1pty c.45.1.2 32656 2fhxA 246 3.04e+01 1booA 323 3.17e+01 1booA c.66.1.11 34248 1xfsA 178 3.24e+01 d.129.3.5 109589 1qb5D 99 3.27e+01 b.40.2.1 88357 1p5vA 235 3.54e+01 b.1.11.1,b.7.2.1 87812,87813 2f8lA 344 3.58e+01 1agp 166 3.59e+01 1ctqA c.37.1.8 31985 1wchA 315 3.62e+01 1evxA 162 3.66e+01 1a73A d.4.1.3 37149 1nhp 447 3.68e+01 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1m2xA 223 3.70e+01 d.157.1.1 84764 1dgsA 667 3.80e+01 1dgsA a.60.2.2,b.40.4.6,d.142.2.2 17963,25365,41581 1k89 449 3.83e+01 1k89 c.2.1.7,c.58.1.1 30218,33866 1grvB 182 3.85e+01 c.61.1.1 76322 1cbf 285 3.85e+01 1cbf c.90.1.1 35587 2aeeA 211 3.88e+01 1jqhA 308 3.96e+01 d.144.1.7 71793 1hqkA 154 3.97e+01 c.16.1.1 65902 1irk 306 4.00e+01 1fmk d.144.1.7 41703 1yfqA 342 4.05e+01 1joa 447 4.10e+01 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30563,30564,40203 1u4cA 349 4.14e+01 b.69.4.2 107666 2ch8A 201 4.16e+01 1aky 221 4.20e+01 1zin c.37.1.1,g.41.2.1 31896,45197 1kzhA 555 4.22e+01 c.89.1.1 73361 1nhs 447 4.24e+01 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2fiqA 420 4.28e+01 4pep 326 4.32e+01 1smrA b.50.1.2 26843 1x1gA 129 4.42e+01 2as9A 210 4.44e+01 1kq3A 376 4.50e+01 e.22.1.2 68790 1tiiD 99 4.74e+01 1tiiD b.40.2.1 24965 1glv 303 4.75e+01 1gsa c.30.1.3,d.142.1.1 31721,41480 2aqjA 538 4.76e+01 1oltA 457 4.77e+01 c.1.28.2 93334 2et1A 201 4.79e+01 1om0A 274 4.90e+01 c.1.8.5 87058 1aotF 106 4.93e+01 1lckA d.93.1.1 40458 1zd9A 188 4.94e+01 1ve2A 235 4.97e+01 1tc1A 220 5.01e+01 1tc1A c.61.1.1 34083 1xvwA 160 5.21e+01 1ta3A 274 5.30e+01 c.1.8.5 106731 1eucA 311 5.30e+01 2scuA c.2.1.8,c.23.4.1 30311,31139 2ag9A 164 5.31e+01 1vjqA 79 5.41e+01 k.43.1.1 100830 2f71A 298 5.41e+01 1td4A 115 5.43e+01 1w85A 368 5.48e+01 1p3jA 217 5.49e+01 c.37.1.1,g.41.2.1 94022,94023 1zkeA 83 5.67e+01 1ptmA 329 5.75e+01 c.77.1.3 95104 2g8jA 339 5.81e+01 1eetA 557 6.07e+01 1rthA c.55.3.1,e.8.1.2 33608,43078 1quqA 129 6.14e+01 1quqA b.40.4.3 25303 1ej8A 140 6.23e+01 1qupA b.1.8.1 22300 1eudA 311 6.24e+01 2scuA c.2.1.8,c.23.4.1 30312,31140 1oe4A 247 6.28e+01 c.18.1.3 86895 1kid 203 6.28e+01 1derA c.8.5.1 30771 1r88A 280 6.28e+01 c.69.1.3 97219 1p4oA 322 6.30e+01 d.144.1.7 87775 1kxrA 339 6.32e+01 d.3.1.3 73175 1p57A 114 6.38e+01 d.170.1.2 94125 1o4vA 183 6.38e+01 c.23.8.1 86628 1bqnA 558 6.40e+01 1rthA c.55.3.1,e.8.1.2 33599,43064 1vzyA 291 6.42e+01 1x05A 129 6.64e+01 1txoA 237 6.71e+01 1wkoA 180 6.81e+01 1d0nA 729 6.83e+01 1d0nA d.109.1.1,d.109.1.1,d.109.1.1,d.109.1.1,d.109.1.1,d.109.1.1 40834,40835,40836,40837,40838,40839 1yv4A 104 6.84e+01 2cbf 234 6.85e+01 1cbf c.90.1.1 35588 1fnf 368 6.86e+01 1fnf b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1 21972,21973,21974,21975 1onc 104 6.88e+01 1onc d.5.1.1 37278 1ffkF 157 7.09e+01 1ffkF d.41.4.1 38628 1ck9A 104 7.12e+01 1ck9A d.79.3.1 39806 1xhkA 187 7.13e+01 1mjfA 281 7.16e+01 c.66.1.17 79198 1jkmB 361 7.22e+01 1jkmA c.69.1.2 34634 1jkmA 358 7.38e+01 1jkmA c.69.1.2 34633 1e9rA 437 7.41e+01 c.37.1.11 64827 1omzA 293 7.41e+01 c.68.1.15 87093 1t61A 229 7.43e+01 d.169.1.6,d.169.1.6 106529,106530 1f0cA 305 7.43e+01 1c8oA e.1.1.1 42676 1vljA 407 7.51e+01 e.22.1.2 108832 1kcw 1046 7.52e+01 1kcw b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3 23151,23152,23153,23154,23155,23156 1dr9A 201 7.53e+01 1dr9A b.1.1.1,b.1.1.3 19762,21684 1blxA 326 7.56e+01 1hcl d.144.1.7 41596 1yt8A 539 7.65e+01 1gsa 316 7.66e+01 1gsa c.30.1.3,d.142.1.1 31718,41477 1ukgA 252 7.71e+01 b.29.1.1 99489 1krhA 338 7.79e+01 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1derA 547 7.87e+01 1derA 1vl7A 157 7.88e+01 b.45.1.1 108732 1rp0A 284 7.94e+01 1n3oA 252 7.97e+01 b.29.1.1 79967 1vhvA 268 7.97e+01 c.90.1.1 100704 1v9fA 325 7.99e+01 d.265.1.3 108448 1fi2A 201 8.03e+01 1fi2A b.82.1.2 59845 1pk6C 129 8.08e+01 b.22.1.1 94803 1tyyA 339 8.10e+01 1gr5A 547 8.16e+01 i.16.1.1 65478 1xt5A 135 8.24e+01 1eny 268 8.26e+01 1eny c.2.1.2 29910 1ssn 136 8.28e+01 2sak d.15.5.1 37720 1kp8A 547 8.31e+01 a.129.1.1,c.8.5.1,d.56.1.1 84414,84415,84416 1mldA 314 8.43e+01 2cmd c.2.1.5,d.162.1.1 30122,42089 1zid 268 8.44e+01 1eny c.2.1.2 29911 1wyuA 438 8.55e+01 1xx0A 127 8.65e+01 1zm0A 114 8.65e+01 1fujA 221 8.73e+01 1a7s b.47.1.2 26349 1r64A 481 8.74e+01 b.18.1.20,c.41.1.1 97140,97141 1a48 306 8.80e+01 1a48 d.143.1.1 41590