# List of top-scoring protein chains for T0356.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1nz9A 58 1.16e+00 b.34.5.4 92364 1m1hA 248 1.19e+00 b.114.1.1,d.58.42.1 78415,78416 1lxjA 104 1.34e+00 d.58.48.1 84736 1mv8A 436 3.10e+00 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1lwjA 441 3.60e+00 b.71.1.1,c.1.8.1 74303,74304 1wblA 241 4.46e+00 1led b.29.1.1 24052 1wbfA 242 4.47e+00 1led b.29.1.1 24050 1go3F 107 6.09e+00 a.60.8.2 65407 2bi7A 384 6.49e+00 1z05A 429 7.66e+00 2es9A 115 8.03e+00 1kamA 194 8.09e+00 c.26.1.3 72254 2ag9A 164 8.20e+00 1oe4A 247 8.65e+00 c.18.1.3 86895 1k1gA 131 9.16e+00 d.51.1.1 68015 2ag4A 164 9.26e+00 1o8uA 257 9.36e+00 c.14.1.3 81194 1pnsP 83 9.65e+00 i.1.1.1 88183 2apoA 357 9.70e+00 1fjgP 88 1.00e+01 1emwA d.27.1.1 38444 1ogyB 130 1.04e+01 a.138.1.3 92954 1nwyT 237 1.10e+01 i.1.1.2 86364 1yl3V 253 1.12e+01 1zorA 399 1.27e+01 1ww9A 392 1.33e+01 1ml5S 91 1.33e+01 i.1.1.1 79274 1szoA 257 1.47e+01 c.14.1.3 106164 1wamA 384 1.48e+01 1tbd 134 1.49e+01 2tbd d.89.1.1 40240 1z1dB 131 1.64e+01 1v9nA 360 1.85e+01 1j88A 172 1.87e+01 2fcbA b.1.1.4,b.1.1.4 62717,62718 1j87A 172 1.88e+01 2fcbA b.1.1.4,b.1.1.4 62715,62716 1f2qA 176 1.90e+01 2fcbA b.1.1.4,b.1.1.4 21789,21790 2fxaA 207 2.11e+01 1g13A 162 2.12e+01 1g13A b.95.1.1 60194 1vj0A 380 2.21e+01 b.35.1.2,c.2.1.1 100786,100787 1fxjA 331 2.21e+01 1fwyA b.81.1.4,c.68.1.5 28062,34520 1tvmA 113 2.24e+01 1k4mA 213 2.44e+01 c.26.1.3 77258 1f6aA 176 2.65e+01 2fcbA b.1.1.4,b.1.1.4 21791,21792 2an1A 292 2.66e+01 1azwA 313 2.85e+01 1qtrA c.69.1.7 34658 1cc1L 498 2.86e+01 1h2rL e.18.1.1 43301 1r88A 280 2.96e+01 c.69.1.3 97219 2ch8A 201 3.24e+01 1hv9A 456 3.58e+01 1fwyA b.81.1.4,c.68.1.5 28060,34518 2fbjH 220 3.63e+01 1igtB b.1.1.1,b.1.1.2 19851,20955 1m54A 363 3.65e+01 c.79.1.1 74463 1pmr 80 3.68e+01 1ghj b.84.1.1 28233 1xc3A 302 3.97e+01 1jbqA 435 4.15e+01 1oasA c.79.1.1 62850 1efpB 252 4.31e+01 1efvB c.26.2.3 31636 1hqkA 154 4.55e+01 c.16.1.1 65902 1klo 162 4.65e+01 1klo g.3.11.2,g.3.11.2,g.3.11.2 44326,44327,44328 1b09A 206 4.70e+01 1sacA b.29.1.5 24247 1g38A 393 4.73e+01 2admA c.66.1.27 60235 1n1qA 149 4.81e+01 a.25.1.1 85260 1eg0N 229 5.04e+01 1ad2 i.1.1.1 45820 2admA 421 5.05e+01 2admA c.66.1.27 34238 1aqjA 421 5.05e+01 2admA c.66.1.27 34242 1ejbA 168 5.09e+01 1rvv1 c.16.1.1 59417 1zhoA 228 5.09e+01 1upaA 573 5.10e+01 c.31.1.3,c.36.1.5,c.36.1.9 99714,99715,99716 1ad2 228 5.17e+01 1ad2 e.24.1.1 43353 1xt5A 135 5.30e+01 487dH 224 5.43e+01 1ad2 i.1.1.2 45835 1g66A 207 5.46e+01 1bs9 c.69.1.30 31329 1npeB 164 5.53e+01 g.3.11.2,g.3.11.2,g.3.11.2 92033,92034,92035 1yz6A 274 5.83e+01 1aim 215 5.84e+01 1cs8A d.3.1.1 37044 1yal 218 5.90e+01 1cs8A d.3.1.1 37025 1og5A 475 5.91e+01 a.104.1.1 86982 1vztA 289 6.06e+01 1me4A 215 6.10e+01 d.3.1.1 79023 1r82A 283 6.36e+01 c.68.1.9 97217 1vzuA 289 6.43e+01 c.68.1.9 108973 1r71A 178 6.44e+01 a.4.14.1 104823 1lzjA 292 6.48e+01 c.68.1.9 74352 1zizA 293 6.49e+01 1jlyA 304 6.58e+01 1jlyA b.42.3.1,b.42.3.1 25587,25588 1n2mA 165 6.58e+01 d.155.1.2 85278 1vdwA 254 6.64e+01 e.7.1.1 100569 3gtuB 224 6.66e+01 1b8xA a.45.1.1,c.47.1.5 17612,32906 1o7qA 289 6.81e+01 c.68.1.9 92626 1o7oA 289 6.91e+01 c.68.1.9 92624 1g8oA 310 6.95e+01 1g8oA c.68.1.9 60375 1wzyA 368 7.41e+01 1g2iA 166 7.88e+01 1g2iA c.23.16.2 31438 1td3A 115 8.27e+01 1pq2A 476 8.28e+01 a.104.1.1 94987 1td4A 115 8.30e+01 1mj0A 166 8.39e+01 k.37.1.1 79174 1xi3A 215 8.43e+01 c.1.3.1 109601 1wohA 305 8.44e+01 c.42.1.1 109446 1vboA 149 8.58e+01 b.77.3.1 108479 1td0A 114 8.74e+01 1u0tA 307 8.93e+01 e.52.1.1 107567 1wleA 501 8.95e+01 1y3hA 307 8.96e+01 2g0cA 76 8.97e+01 1j4tA 149 8.98e+01 b.77.3.1 71515 1vbpA 149 8.99e+01 b.77.3.1 108487