# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wleA 501 4.68e-01 1tbd 134 1.03e+00 2tbd d.89.1.1 40240 1kq3A 376 1.57e+00 e.22.1.2 68790 1szoA 257 3.53e+00 c.14.1.3 106164 2cuaA 135 3.86e+00 2cuaA b.6.1.2 23039 1pjcA 361 5.45e+00 1sayA c.2.1.4,c.23.12.2 30101,31361 1ejeA 192 6.28e+00 1ejeA b.45.1.2 25757 1r88A 280 6.36e+00 c.69.1.3 97219 1ww9A 392 6.62e+00 3ullA 132 6.88e+00 3ullA b.40.4.3 25282 1mkyA 439 8.45e+00 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1nhs 447 8.72e+00 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1y9aA 360 9.54e+00 1rz1A 161 9.58e+00 b.45.1.2 98124 1a6q 382 9.75e+00 1a6q a.159.1.1,d.219.1.1 75801,75802 1a73A 163 1.04e+01 1a73A d.4.1.3 37145 1k4mA 213 1.05e+01 c.26.1.3 77258 1xvwA 160 1.06e+01 2ch8A 201 1.23e+01 1fjgP 88 1.27e+01 1emwA d.27.1.1 38444 1p5vA 235 1.31e+01 b.1.11.1,b.7.2.1 87812,87813 1vzyA 291 1.36e+01 1b00A 127 1.40e+01 3chy c.23.1.1 31122 1wxcA 281 1.49e+01 1vb5A 276 1.49e+01 1ve2A 235 1.52e+01 1w85A 368 1.55e+01 1jf8A 131 1.58e+01 c.44.1.1 66621 1oaoA 674 1.61e+01 e.26.1.2 86744 1rl6A 177 1.68e+01 1rl6A d.141.1.1,d.141.1.1 41473,41474 2fliA 220 1.80e+01 1jl3A 139 1.98e+01 c.44.1.1 66826 1u8zA 168 2.22e+01 1a8q 274 2.31e+01 1brt c.69.1.12 34702 1ve0A 134 2.36e+01 2f8lA 344 2.37e+01 1ukuA 102 2.40e+01 d.58.5.2 99533 1sfe 180 2.40e+01 1sfe a.4.2.1,c.55.7.1 16073,33748 1ejbA 168 2.47e+01 1rvv1 c.16.1.1 59417 1o6aA 96 2.50e+01 b.139.1.1 92562 2fiqA 420 2.50e+01 1aisB 200 2.53e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1sqhA 312 2.55e+01 d.108.1.5 98966 2cu6A 103 2.60e+01 1xfsA 178 2.64e+01 d.129.3.5 109589 1x6oA 174 2.69e+01 b.34.5.2,b.40.4.5 109493,109494 1vjqA 79 2.70e+01 k.43.1.1 100830 1kgsA 225 2.72e+01 a.4.6.1,c.23.1.1 68596,68597 2h2tB 175 2.76e+01 2as9A 210 2.81e+01 1hqkA 154 2.90e+01 c.16.1.1 65902 1wcuA 153 3.01e+01 2arhA 203 3.01e+01 1vhvA 268 3.03e+01 c.90.1.1 100704 1xt5A 135 3.04e+01 1vl1A 232 3.06e+01 c.124.1.1 108707 2fwkA 121 3.10e+01 2cnqA 306 3.16e+01 1w0mA 226 3.25e+01 c.1.1.1 109027 1tc1A 220 3.26e+01 1tc1A c.61.1.1 34083 1ujpA 271 3.26e+01 c.1.2.4 99462 2aeeA 211 3.34e+01 1pkoA 139 3.38e+01 b.1.1.1 88147 1ns5A 155 3.47e+01 c.116.1.3 80705 1v3vA 333 3.50e+01 b.35.1.2,c.2.1.1 108345,108346 1kid 203 3.56e+01 1derA c.8.5.1 30771 1vl7A 157 3.59e+01 b.45.1.1 108732 1qsmA 152 3.64e+01 1qsmA d.108.1.1 40808 2bgcA 238 3.74e+01 1f74A 293 3.77e+01 1nal3 c.1.10.1 29079 1td4A 115 3.93e+01 1ctqA 166 4.05e+01 1ctqA c.37.1.8 31965 2cxcA 144 4.16e+01 1bj7 156 4.20e+01 1bj7 b.60.1.1 27113 1mldA 314 4.21e+01 2cmd c.2.1.5,d.162.1.1 30122,42089 2evwX 166 4.23e+01 1obdA 306 4.37e+01 d.143.1.1 86767 1t06A 235 4.53e+01 a.118.1.17 106194 1luaA 287 4.60e+01 c.2.1.7,c.58.1.4 78216,78217 1aqzA 149 4.64e+01 1aqzA d.1.1.3 36238 1r64A 481 4.64e+01 b.18.1.20,c.41.1.1 97140,97141 1dxeA 256 4.78e+01 1dxeA c.1.12.5 29310 1rybA 212 4.87e+01 c.56.3.1 98098 1v9fA 325 4.95e+01 d.265.1.3 108448 2c07A 285 4.98e+01 1qkkA 155 4.99e+01 1dbwA c.23.1.1 31104 1v0wA 506 5.00e+01 d.136.1.2,d.136.1.2 108220,108221 1iq6A 134 5.01e+01 d.38.1.4 76755 2a10A 125 5.05e+01 1wy2A 351 5.06e+01 1yifA 533 5.09e+01 1cjcA 460 5.10e+01 1cjcA c.3.1.1,c.4.1.1 30319,30604 1oywA 523 5.19e+01 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1kafA 108 5.22e+01 d.199.1.1 68372 1yreA 197 5.27e+01 1m93B 245 5.37e+01 2c78A 405 5.39e+01 1nwwA 149 5.52e+01 d.17.4.8 86306 1kqfB 294 5.54e+01 d.58.1.5,f.23.22.1 75900,75901 1o22A 170 5.60e+01 d.238.1.1 86557 3pviA 157 5.60e+01 3pviA c.52.1.6 33300 1qzzA 374 5.67e+01 a.4.5.29,c.66.1.12 96719,96720 1wd5A 208 5.69e+01 1l8aA 886 5.75e+01 c.36.1.10,c.36.1.6,c.48.1.1 73677,73678,73679 1ei9A 279 5.80e+01 1ei9A c.69.1.13 34713 1qfxA 460 5.81e+01 1qfxA c.60.1.2 33994 1ihjA 98 5.83e+01 1pdr b.36.1.1 62382 1s62A 106 5.92e+01 1e12A 253 5.97e+01 1c3wA f.13.1.1 43428 1z9lA 128 6.06e+01 1p42A 270 6.11e+01 d.14.1.7,d.14.1.7 87754,87755 2b99A 156 6.30e+01 2et1A 201 6.33e+01 1yal 218 6.36e+01 1cs8A d.3.1.1 37025 1p80A 753 6.40e+01 c.23.16.3,e.5.1.1 94337,94338 1g2iA 166 6.44e+01 1g2iA c.23.16.2 31438 1hbnC 248 6.47e+01 1mroC d.58.31.1 60902 2ew8A 249 6.50e+01 1v60A 123 6.59e+01 1tp9A 162 6.75e+01 1t61A 229 6.76e+01 d.169.1.6,d.169.1.6 106529,106530 2btzA 394 6.86e+01 2bkfA 87 6.91e+01 1oltA 457 6.95e+01 c.1.28.2 93334 1qgvA 142 7.11e+01 1qgvA c.47.1.8 33056 1q0uA 219 7.11e+01 c.37.1.19 95512 1pk6C 129 7.30e+01 b.22.1.1 94803 1h5rA 293 7.40e+01 c.68.1.6 65623 1dyr 206 7.55e+01 1aoeA c.71.1.1 34916 1o0yA 260 7.59e+01 c.1.10.1 80756 1zoiA 276 7.66e+01 1t95A 240 7.86e+01 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1heiA 451 7.89e+01 1heiA c.37.1.14,c.37.1.14 32463,32464 1ukgA 252 7.92e+01 b.29.1.1 99489 1inlA 296 8.03e+01 c.66.1.17 66220 1e9rA 437 8.25e+01 c.37.1.11 64827 1qipA 183 8.26e+01 1qipA d.32.1.1 38470 2bb3A 221 8.47e+01 1gpiA 431 8.51e+01 b.29.1.10 65450 1iyeA 309 8.63e+01 e.17.1.1 83786 1iibA 106 8.76e+01 1iibA c.44.2.1 32648 1qb5D 99 8.89e+01 b.40.2.1 88357 1wlsA 328 8.94e+01 2aliA 158 8.94e+01