# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1pjcA 361 2.43e-01 1sayA c.2.1.4,c.23.12.2 30101,31361 1ejbA 168 1.11e+00 1rvv1 c.16.1.1 59417 1vdc 333 1.20e+00 1trb c.3.1.5,c.3.1.5 30545,30546 1vj0A 380 1.95e+00 b.35.1.2,c.2.1.1 100786,100787 1fjgP 88 2.75e+00 1emwA d.27.1.1 38444 1k4mA 213 3.20e+00 c.26.1.3 77258 1oe4A 247 3.33e+00 c.18.1.3 86895 2an1A 292 4.21e+00 1r88A 280 4.36e+00 c.69.1.3 97219 1qo7A 394 4.89e+00 1qo7A c.69.1.11 34697 1ni9A 338 5.82e+00 e.7.1.2 85739 1ez0A 510 6.55e+00 1eyyA c.82.1.1 35385 1lxjA 104 8.16e+00 d.58.48.1 84736 1odfA 290 8.33e+00 c.37.1.6 92782 1o2dA 371 8.44e+00 e.22.1.2 86591 1fl2A 310 8.67e+00 1hyuA c.3.1.5,c.3.1.5 59869,59870 2ez3A 302 8.70e+00 1trb 320 9.60e+00 1trb c.3.1.5,c.3.1.5 30529,30530 1ou0A 207 1.00e+01 c.23.17.1 93536 1uk8A 282 1.02e+01 c.69.1.10 107907 1zc6A 305 1.17e+01 2ffcA 353 1.17e+01 1gteA 1025 1.18e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1luaA 287 1.25e+01 c.2.1.7,c.58.1.4 78216,78217 1y89A 238 1.25e+01 1whsA 255 1.28e+01 1ivyA c.69.1.5 34649 1gu7A 364 1.29e+01 b.35.1.2,c.2.1.1 83321,83322 1cvrA 435 1.31e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 1u02A 239 1.36e+01 c.108.1.15 107538 2cvjA 180 1.40e+01 1kfwA 435 1.46e+01 c.1.8.5,d.26.3.1 77376,77377 1pv1A 299 1.56e+01 1nkgA 508 1.60e+01 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 2d1sA 548 1.64e+01 2a1fA 247 1.73e+01 1t8tA 271 1.74e+01 c.37.1.5 106685 2cdcA 366 1.76e+01 1vi9A 299 1.77e+01 c.72.1.5 100750 1mo9A 523 1.80e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1wohA 305 1.83e+01 c.42.1.1 109446 1ig8A 486 1.92e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 2g0cA 76 1.98e+01 1omhA 293 2.02e+01 d.89.1.5 93348 1p5dX 463 2.09e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1r6uA 437 2.10e+01 c.26.1.1 97163 2fdsA 352 2.16e+01 1pea 385 2.21e+01 1pea c.93.1.1 35662 1oi7A 288 2.25e+01 c.2.1.8,c.23.4.1 87049,87050 4pgaA 337 2.27e+01 4pgaA c.88.1.1 35565 1g8kA 825 2.42e+01 1g8jA b.52.2.2,c.81.1.1 26920,35328 1klo 162 2.43e+01 1klo g.3.11.2,g.3.11.2,g.3.11.2 44326,44327,44328 1xt5A 135 2.44e+01 1o7qA 289 2.44e+01 c.68.1.9 92626 1wm1A 317 2.44e+01 c.69.1.7 109405 1v3vA 333 2.45e+01 b.35.1.2,c.2.1.1 108345,108346 1b00A 127 2.46e+01 3chy c.23.1.1 31122 1sheA 103 2.50e+01 d.274.1.1 105551 2fiqA 420 2.51e+01 2ch8A 201 2.58e+01 1xvaA 292 2.59e+01 1xvaA c.66.1.5 34183 1upaA 573 2.60e+01 c.31.1.3,c.36.1.5,c.36.1.9 99714,99715,99716 1i24A 404 2.70e+01 c.2.1.2 83663 1qe3A 489 2.73e+01 2bce c.69.1.1 34630 2hvm 273 2.73e+01 1cnv c.1.8.5 28985 1v0wA 506 2.75e+01 d.136.1.2,d.136.1.2 108220,108221 1rsgA 516 2.79e+01 1ufoA 238 2.80e+01 c.69.1.27 99344 1ta3A 274 2.83e+01 c.1.8.5 106731 1vi2A 300 2.92e+01 c.2.1.7,c.58.1.5 100726,100727 1gq6A 313 3.05e+01 c.42.1.1 70341 2b99A 156 3.07e+01 2cxnA 557 3.13e+01 1pn0A 665 3.14e+01 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1kbvA 327 3.19e+01 b.6.1.3,b.6.1.3 68395,68396 1ju2A 536 3.35e+01 c.3.1.2,d.16.1.1 77169,77170 2gv8A 447 3.44e+01 1i88A 389 3.44e+01 c.95.1.2,c.95.1.2 66070,66071 2al1A 436 3.53e+01 1l5wA 796 3.54e+01 c.87.1.4 73605 2fliA 220 3.54e+01 1l1eA 287 3.56e+01 c.66.1.18 73454 1lqtA 456 3.64e+01 c.3.1.1,c.4.1.1 74198,74199 1dbqA 289 3.67e+01 1qpzA c.93.1.1 35666 1aqzA 149 3.71e+01 1aqzA d.1.1.3 36238 1d3vA 323 3.73e+01 1d3vA c.42.1.1 32559 1g2oA 268 3.74e+01 1b8oA c.56.2.1 60228 1czaN 917 3.78e+01 1qhaA c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1u0fA 564 3.88e+01 1x9gA 200 3.90e+01 c.33.1.3 109527 1a6q 382 3.91e+01 1a6q a.159.1.1,d.219.1.1 75801,75802 1u2eA 289 3.99e+01 1vknA 351 3.99e+01 c.2.1.3,d.81.1.1 108676,108677 1nhs 447 4.18e+01 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1vb5A 276 4.40e+01 1vkmA 297 4.43e+01 c.138.1.1 108670 2gefA 217 4.43e+01 1yzfA 195 4.44e+01 1kgsA 225 4.52e+01 a.4.6.1,c.23.1.1 68596,68597 1ff9A 450 4.58e+01 1ff9A c.2.1.3,d.81.1.2 30039,39954 1z9lA 128 4.64e+01 1hfeL 421 4.70e+01 1fehA c.96.1.1,d.58.1.5 36018,39001 2c2nA 339 4.77e+01 1ewkA 490 4.99e+01 1ewkA c.93.1.1 35712 1l7mA 211 5.01e+01 c.108.1.4 73664 1jftA 340 5.15e+01 a.35.1.5,c.93.1.1 66652,66653 1mkiA 330 5.21e+01 e.3.1.2 84994 1rypK 198 5.21e+01 d.153.1.4 41879 1xesA 413 5.22e+01 2cuaA 135 5.23e+01 2cuaA b.6.1.2 23039 1k0iA 394 5.25e+01 c.3.1.2,d.16.1.2 67942,67943 1k66A 149 5.25e+01 c.23.1.1 90941 1ir6A 424 5.29e+01 c.107.1.2 71342 1oyzA 280 5.32e+01 a.118.1.16 93775 1ttuA 477 5.40e+01 b.1.18.1,b.2.5.8,b.42.7.1 107305,107306,107307 2f5vA 595 5.42e+01 1ukcA 522 5.42e+01 c.69.1.17 107911 1ivyA 452 5.44e+01 1ivyA c.69.1.5 34654 1ykjA 394 5.48e+01 1qlwA 328 5.49e+01 1qlwA c.69.1.15 34722 1tzlA 622 5.50e+01 1g2iA 166 5.53e+01 1g2iA c.23.16.2 31438 1yb5A 351 5.64e+01 1wlsA 328 5.68e+01 1ko3A 230 5.76e+01 d.157.1.1 90974 1xq6A 253 5.77e+01 1v4sA 455 5.83e+01 c.55.1.3,c.55.1.3 100309,100310 1rljA 139 5.84e+01 c.23.5.7 104983 2aebA 322 5.94e+01 1c3pA 375 6.03e+01 1c3pA c.42.1.2 32606 1mjfA 281 6.07e+01 c.66.1.17 79198 12asA 330 6.11e+01 12asA d.104.1.1 40783 1hyoA 421 6.13e+01 1qcnA b.34.8.1,d.177.1.1 59001,59002 1tqyB 415 6.22e+01 c.95.1.1,c.95.1.1 107247,107248 1tt0A 623 6.33e+01 2al2A 436 6.39e+01 1toaA 313 6.40e+01 1toaA c.92.2.2 35598 2bzlA 325 6.40e+01 1fc6A 388 6.46e+01 1fc6A b.36.1.3,c.14.1.2 64738,64739 1a99A 344 6.51e+01 1pot c.94.1.1 35812 1uuyA 167 6.52e+01 c.57.1.1 108059 1o60A 292 6.65e+01 c.1.10.4 92532 1oneA 436 6.66e+01 4enl c.1.11.1,d.54.1.1 29200,38844 1a8q 274 6.69e+01 1brt c.69.1.12 34702 1wrmA 165 6.71e+01 1e5pA 151 6.72e+01 1bj7 b.60.1.1 59272 1yi8A 351 6.80e+01 1qreA 247 6.96e+01 1qreA b.81.1.5 28066 1m1nA 491 6.98e+01 c.92.2.3 78417 1x1tA 260 7.01e+01 1t9bA 677 7.03e+01 1gpjA 404 7.09e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1dmhA 311 7.10e+01 1dmhA b.3.6.1 22633 1qh8A 478 7.11e+01 1qguA c.92.2.3 35633 1mdl 359 7.15e+01 2mnr c.1.11.2,d.54.1.1 29247,38891 1kdgA 546 7.17e+01 c.3.1.2,d.16.1.1 77337,77338 1o6dA 163 7.23e+01 c.116.1.3 92567 1eiwA 111 7.27e+01 1eiwA c.23.3.1 31130 1q5dA 419 7.37e+01 a.104.1.1 95891 1u6eA 335 7.38e+01 1nrwA 288 7.39e+01 c.108.1.10 86128 2biiA 424 7.42e+01 1cjcA 460 7.51e+01 1cjcA c.3.1.1,c.4.1.1 30319,30604 1rlmA 271 7.56e+01 1n4wA 504 7.57e+01 c.3.1.2,d.16.1.1 91676,91677 1vljA 407 7.61e+01 e.22.1.2 108832 1ig3A 263 7.66e+01 1ig3A b.82.6.1,c.100.1.1 62358,62359 2ag4A 164 7.72e+01 1tp9A 162 7.75e+01 1v4vA 376 7.89e+01 c.87.1.3 100313 1n55A 251 7.94e+01 c.1.1.1 80007 1nw3A 416 8.02e+01 c.66.1.31 86288 1q1rA 431 8.03e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1hn3A 40 8.05e+01 j.91.1.1 65892 1xqwA 293 8.13e+01 1ihoA 283 8.13e+01 1ihoA c.26.1.4 62390 1d3yA 301 8.17e+01 1d3yA e.12.1.1 43252 1wdpA 495 8.18e+01 1cnv 299 8.23e+01 1cnv c.1.8.5 28989 2cxxA 190 8.29e+01 1ymqA 261 8.37e+01 1h5uA 842 8.41e+01 1a8i c.87.1.4 60655 1mtzA 293 8.43e+01 c.69.1.7 79467 1uzmA 247 8.59e+01 2aqjA 538 8.60e+01 2a65A 519 8.70e+01 1x0vA 354 8.85e+01 1a2zA 220 8.86e+01 1a2zA c.56.4.1 33794 2a14A 263 8.86e+01 1njrA 284 8.87e+01 c.50.1.2 103858 1szoA 257 8.96e+01 c.14.1.3 106164