# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1lxjA 104 7.35e-01 d.58.48.1 84736 1ejbA 168 1.07e+00 1rvv1 c.16.1.1 59417 1pjcA 361 1.13e+00 1sayA c.2.1.4,c.23.12.2 30101,31361 1r88A 280 1.60e+00 c.69.1.3 97219 1k4mA 213 2.33e+00 c.26.1.3 77258 1fjgP 88 2.89e+00 1emwA d.27.1.1 38444 1vj0A 380 3.89e+00 b.35.1.2,c.2.1.1 100786,100787 1klo 162 4.01e+00 1klo g.3.11.2,g.3.11.2,g.3.11.2 44326,44327,44328 1qo7A 394 6.22e+00 1qo7A c.69.1.11 34697 1xt5A 135 6.65e+00 1o8uA 257 6.86e+00 c.14.1.3 81194 1ni9A 338 7.35e+00 e.7.1.2 85739 1wohA 305 7.45e+00 c.42.1.1 109446 1eudA 311 7.63e+00 2scuA c.2.1.8,c.23.4.1 30312,31140 1lzjA 292 9.42e+00 c.68.1.9 74352 2cuaA 135 9.71e+00 2cuaA b.6.1.2 23039 1oj7A 408 1.02e+01 e.22.1.2 103971 1zc6A 305 1.14e+01 1ez0A 510 1.16e+01 1eyyA c.82.1.1 35385 1kqfA 1015 1.22e+01 b.52.2.2,c.81.1.1 72871,72872 1szoA 257 1.23e+01 c.14.1.3 106164 1oe4A 247 1.31e+01 c.18.1.3 86895 1gteA 1025 1.48e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1r5jA 337 1.58e+01 c.77.1.5 97097 1ig8A 486 1.61e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 1wm1A 317 1.61e+01 c.69.1.7 109405 1v0wA 506 1.63e+01 d.136.1.2,d.136.1.2 108220,108221 2fgoA 82 1.63e+01 1i1qA 520 1.65e+01 1qdlA d.161.1.1 61543 1y9aA 360 1.71e+01 1upaA 573 1.74e+01 c.31.1.3,c.36.1.5,c.36.1.9 99714,99715,99716 2akzA 439 1.74e+01 1h7wA 1025 1.82e+01 1h7wA a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1qtrA 317 1.91e+01 1qtrA c.69.1.7 34660 1ml8A 134 1.92e+01 d.227.1.2 85013 2b99A 156 1.96e+01 1a9xA 1058 1.98e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1vkmA 297 2.00e+01 c.138.1.1 108670 2g0cA 76 2.03e+01 1vdc 333 2.05e+01 1trb c.3.1.5,c.3.1.5 30545,30546 1gx4A 289 2.07e+01 c.68.1.9 83362 1pjqA 457 2.09e+01 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2ch8A 201 2.17e+01 1o7qA 289 2.30e+01 c.68.1.9 92626 1te6A 439 2.33e+01 c.1.11.1,d.54.1.1 106797,106798 1vb5A 276 2.56e+01 1nkgA 508 2.59e+01 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 1om0A 274 2.60e+01 c.1.8.5 87058 1f0iA 504 2.63e+01 1f0iA d.136.1.2,d.136.1.2 59566,59567 1ta3A 274 2.80e+01 c.1.8.5 106731 2d1sA 548 2.91e+01 1azwA 313 2.91e+01 1qtrA c.69.1.7 34658 1y0eA 223 3.00e+01 1oi7A 288 3.00e+01 c.2.1.8,c.23.4.1 87049,87050 1wmbA 260 3.23e+01 1byi 224 3.34e+01 1byi c.37.1.10 32199 1pdz 434 3.37e+01 4enl c.1.11.1,d.54.1.1 29215,38859 2es9A 115 3.40e+01 1ou0A 207 3.51e+01 c.23.17.1 93536 1e2fA 215 3.62e+01 3tmkA c.37.1.1 59164 1cs0A 1073 3.65e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 2an1A 292 3.69e+01 1efpB 252 3.93e+01 1efvB c.26.2.3 31636 1zl0A 311 3.99e+01 4enl 436 4.01e+01 4enl c.1.11.1,d.54.1.1 29202,38846 1h7zA 194 4.06e+01 1qhvA b.21.1.1 60733 2biiA 424 4.27e+01 1z41A 338 4.36e+01 1yovA 537 4.36e+01 1o2dA 371 4.51e+01 e.22.1.2 86591 1x1tA 260 4.54e+01 2a1fA 247 4.56e+01 1ww9A 392 4.58e+01 2ag9A 164 4.58e+01 1hyuA 521 4.65e+01 1hyuA c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 2ewrA 170 4.67e+01 1ad2 228 4.67e+01 1ad2 e.24.1.1 43353 1njrA 284 4.70e+01 c.50.1.2 103858 1eqcA 394 4.75e+01 1cz1A c.1.8.3 28811 1luaA 287 4.80e+01 c.2.1.7,c.58.1.4 78216,78217 1tbd 134 4.95e+01 2tbd d.89.1.1 40240 1zrsA 317 4.98e+01 1k66A 149 4.99e+01 c.23.1.1 90941 1gsa 316 5.00e+01 1gsa c.30.1.3,d.142.1.1 31718,41477 1g1xC 88 5.06e+01 1fjfR a.4.8.1 16249 2arhA 203 5.12e+01 1jnrA 643 5.19e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1o86A 589 5.24e+01 d.92.1.5 81177 1ztuA 341 5.32e+01 1ny4A 82 5.37e+01 b.40.4.5 92316 1kfwA 435 5.39e+01 c.1.8.5,d.26.3.1 77376,77377 2as9A 210 5.48e+01 2aunA 317 5.78e+01 1uzeA 589 5.85e+01 d.92.1.5 108174 1kao 167 5.85e+01 1ctqA c.37.1.8 32014 1x3zA 335 5.93e+01 2fjbA 643 6.00e+01 1qmgA 524 6.04e+01 1qmgA a.100.1.2,c.2.1.6 18785,30182 1tvdA 116 6.08e+01 1tvdA b.1.1.1 20650 1eiwA 111 6.09e+01 1eiwA c.23.3.1 31130 2aumA 317 6.11e+01 1zxxA 319 6.13e+01 1k0iA 394 6.14e+01 c.3.1.2,d.16.1.2 67942,67943 1oyzA 280 6.19e+01 a.118.1.16 93775 2ahjB 212 6.25e+01 2ahjB b.34.4.4 24599 1uuyA 167 6.27e+01 c.57.1.1 108059 2gefA 217 6.36e+01 1oaoA 674 6.51e+01 e.26.1.2 86744 1fohA 664 6.55e+01 1fohA c.3.1.2,c.47.1.10,d.16.1.2 30381,33078,37900 1ykjA 394 6.57e+01 1oneA 436 6.68e+01 4enl c.1.11.1,d.54.1.1 29200,38844 2al2A 436 6.75e+01 1pbe 394 6.75e+01 1pbe c.3.1.2,d.16.1.2 30338,37869 2al1A 436 6.93e+01 1je8A 82 7.20e+01 a.4.6.2 77108 2b3yA 888 7.24e+01 1aquA 297 7.31e+01 1aquA c.37.1.5 31942 2fliA 220 7.37e+01 1xseA 295 7.43e+01 1bi5A 389 7.46e+01 1bi5A c.95.1.2,c.95.1.2 35985,35986 1vjjA 692 7.55e+01 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 100814,100815,100816,100817 1gdeA 389 7.62e+01 c.67.1.1 60456 1pn0A 665 7.72e+01 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1x74A 360 7.75e+01 1pu5A 164 7.82e+01 b.95.1.1 104310 2feaA 236 7.85e+01 1ob8A 135 7.95e+01 1e5pA 151 7.98e+01 1bj7 b.60.1.1 59272 2bneA 241 8.02e+01 1y89A 238 8.32e+01 1viaA 175 8.33e+01 c.37.1.2 100754 1h72C 296 8.46e+01 d.14.1.5,d.58.26.1 60712,60713 1fwxA 595 8.51e+01 b.6.1.4,b.69.3.1 60069,60070 1wleA 501 8.53e+01 1iupA 282 8.56e+01 c.69.1.10 76815 1jjiA 311 8.68e+01 c.69.1.2 66766 1xmpA 170 8.79e+01 1g2iA 166 8.85e+01 1g2iA c.23.16.2 31438 1jzuA 157 8.89e+01 b.60.1.1 84271 2cz1B 212 8.92e+01