# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ejeA 192 6.24e-02 1ejeA b.45.1.2 25757 1u0tA 307 3.94e-01 e.52.1.1 107567 1kq3A 376 9.62e-01 e.22.1.2 68790 1tbd 134 9.91e-01 2tbd d.89.1.1 40240 1przA 252 2.26e+00 d.265.1.3 95064 1fjgP 88 2.31e+00 1emwA d.27.1.1 38444 1ejbA 168 2.87e+00 1rvv1 c.16.1.1 59417 1ihjA 98 4.34e+00 1pdr b.36.1.1 62382 1mkyA 439 4.46e+00 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1eudA 311 5.41e+00 2scuA c.2.1.8,c.23.4.1 30312,31140 1qsoA 149 5.52e+00 1qsmA d.108.1.1 40812 1nt4A 391 5.79e+00 c.60.1.2 92102 2ch8A 201 6.08e+00 2ew8A 249 6.45e+00 2b99A 156 6.46e+00 1w85A 368 6.95e+00 1v9fA 325 7.16e+00 d.265.1.3 108448 2arhA 203 7.83e+00 1vzyA 291 8.05e+00 1a73A 163 1.06e+01 1a73A d.4.1.3 37145 1yal 218 1.08e+01 1cs8A d.3.1.1 37025 2f8lA 344 1.09e+01 2cuaA 135 1.17e+01 2cuaA b.6.1.2 23039 1x1gA 129 1.17e+01 1rl6A 177 1.18e+01 1rl6A d.141.1.1,d.141.1.1 41473,41474 1xkiA 162 1.28e+01 1vjqA 79 1.29e+01 k.43.1.1 100830 3ullA 132 1.30e+01 3ullA b.40.4.3 25282 1i0lA 221 1.34e+01 c.61.1.1 71096 1wxcA 281 1.35e+01 1evxA 162 1.36e+01 1a73A d.4.1.3 37149 1gpiA 431 1.42e+01 b.29.1.10 65450 2fliA 220 1.43e+01 1tp9A 162 1.46e+01 1r88A 280 1.48e+01 c.69.1.3 97219 1tc1A 220 1.50e+01 1tc1A c.61.1.1 34083 1wleA 501 1.53e+01 1nhs 447 1.53e+01 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1hkfA 122 1.57e+01 b.1.1.1 83553 1pk6C 129 1.66e+01 b.22.1.1 94803 2fiqA 420 1.67e+01 1v3vA 333 1.73e+01 b.35.1.2,c.2.1.1 108345,108346 1hrhA 136 1.75e+01 1rthA c.55.3.1 33577 1nhp 447 1.80e+01 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1nbwB 117 1.86e+01 c.51.3.2 80396 1hgxA 183 1.90e+01 1tc1A c.61.1.1 34027 1xfsA 178 1.94e+01 d.129.3.5 109589 1vb5A 276 1.97e+01 1o22A 170 2.00e+01 d.238.1.1 86557 1o4vA 183 2.02e+01 c.23.8.1 86628 1eny 268 2.05e+01 1eny c.2.1.2 29910 1kgsA 225 2.14e+01 a.4.6.1,c.23.1.1 68596,68597 1t0bA 252 2.19e+01 c.23.16.6 106199 1v0wA 506 2.19e+01 d.136.1.2,d.136.1.2 108220,108221 1a6q 382 2.23e+01 1a6q a.159.1.1,d.219.1.1 75801,75802 1aisB 200 2.25e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1a48 306 2.26e+01 1a48 d.143.1.1 41590 1td4A 115 2.26e+01 2cnqA 306 2.28e+01 1t95A 240 2.42e+01 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1pjcA 361 2.47e+01 1sayA c.2.1.4,c.23.12.2 30101,31361 1obdA 306 2.48e+01 d.143.1.1 86767 2glfA 450 2.48e+01 2aeeA 211 2.55e+01 1w0mA 226 2.56e+01 c.1.1.1 109027 1qe5A 266 2.60e+01 1b8oA c.56.2.1 33784 2bgcA 238 2.63e+01 1rz1A 161 2.64e+01 b.45.1.2 98124 1jv2B 692 2.64e+01 b.1.15.1,c.62.1.1,d.200.1.1,g.3.11.6,g.3.11.6 67338,67339,67340,67341,67342 1ve0A 134 2.70e+01 1xt5A 135 2.72e+01 1uuyA 167 2.76e+01 c.57.1.1 108059 1ww9A 392 2.82e+01 1v60A 123 2.86e+01 1h7zA 194 2.92e+01 1qhvA b.21.1.1 60733 1f0iA 504 2.97e+01 1f0iA d.136.1.2,d.136.1.2 59566,59567 1s62A 106 2.98e+01 1vhvA 268 3.01e+01 c.90.1.1 100704 2evwX 166 3.02e+01 2bzlA 325 3.05e+01 1gtkA 313 3.05e+01 c.94.1.1,d.50.2.1 76346,76347 1y89A 238 3.06e+01 1jmmA 377 3.15e+01 b.30.6.1 71749 1q0uA 219 3.17e+01 c.37.1.19 95512 1ws6A 171 3.21e+01 1zesA 125 3.24e+01 1qsmA 152 3.25e+01 1qsmA d.108.1.1 40808 1p9qC 256 3.27e+01 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 1xmpA 170 3.29e+01 1nh1A 330 3.31e+01 e.45.1.1 91871 1hv9A 456 3.50e+01 1fwyA b.81.1.4,c.68.1.5 28060,34518 1gpl 432 3.52e+01 1gpl b.12.1.2,c.69.1.19 23645,34793 1xvwA 160 3.53e+01 1ha3A 405 3.56e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 60869,60870,60871 2madH 373 3.57e+01 2bbkH b.69.2.1 27639 1t61A 229 3.62e+01 d.169.1.6,d.169.1.6 106529,106530 1ctqA 166 3.63e+01 1ctqA c.37.1.8 31965 2aq8A 269 3.68e+01 1wcuA 153 3.68e+01 1fxjA 331 3.72e+01 1fwyA b.81.1.4,c.68.1.5 28062,34520 1byi 224 3.74e+01 1byi c.37.1.10 32199 1omiA 248 3.79e+01 b.82.3.3,a.4.5.4 87079,87080 1ve2A 235 3.85e+01 1euvB 86 3.91e+01 1a5r d.15.1.1 37598 1x0vA 354 3.96e+01 1oi7A 288 4.14e+01 c.2.1.8,c.23.4.1 87049,87050 1li1A 229 4.19e+01 d.169.1.6,d.169.1.6 73898,73899 1e8yA 966 4.28e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1ukuA 102 4.38e+01 d.58.5.2 99533 1ujpA 271 4.40e+01 c.1.2.4 99462 1k1eA 180 4.41e+01 c.108.1.5 67995 1ptmA 329 4.42e+01 c.77.1.3 95104 2ag4A 164 4.43e+01 1kafA 108 4.45e+01 d.199.1.1 68372 1kevA 351 4.48e+01 1pedA b.35.1.2,c.2.1.1 24749,29765 1m93B 245 4.49e+01 1b24A 188 4.51e+01 1b24A d.95.2.1,d.95.2.1 40573,40574 1exmA 405 4.52e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 2a10A 125 4.52e+01 1mb3A 124 4.57e+01 c.23.1.1 78907 1bjt 793 4.61e+01 1bjt e.11.1.1 43249 1ns5A 155 4.61e+01 c.116.1.3 80705 1scuA 288 4.67e+01 2scuA c.2.1.8,c.23.4.1 30307,31135 2b3yA 888 4.67e+01 1x6oA 174 4.69e+01 b.34.5.2,b.40.4.5 109493,109494 1fjgK 129 4.71e+01 1fjfK c.55.4.1 33733 1iq6A 134 4.82e+01 d.38.1.4 76755 1n2zA 245 4.83e+01 c.92.2.2 79865 1s5lO 246 4.87e+01 1o2dA 371 4.94e+01 e.22.1.2 86591 1t7lA 766 5.02e+01 2asuB 234 5.04e+01 1zh2A 121 5.06e+01 1ei9A 279 5.07e+01 1ei9A c.69.1.13 34713 1e9rA 437 5.08e+01 c.37.1.11 64827 1v7oA 165 5.12e+01 d.67.1.2 100480 1o8xA 146 5.18e+01 c.47.1.10 86681 1zl0A 311 5.19e+01 1d1gA 168 5.20e+01 1d1gA c.71.1.1 34889 1jeyB 565 5.29e+01 1jeqB b.131.1.2,c.62.1.4 90372,90373 1y9aA 360 5.32e+01 1oxxK 353 5.43e+01 b.40.6.3,c.37.1.12 93715,93716 2aunA 317 5.44e+01 2aumA 317 5.46e+01 1zrsA 317 5.46e+01 1fds 327 5.46e+01 1fds c.2.1.2 29838 2et1A 201 5.50e+01 1jtvA 327 5.52e+01 c.2.1.2 84230 1zd9A 188 5.53e+01 2fg9A 178 5.58e+01 1u11A 182 5.61e+01 c.23.8.1 107576 2h2tB 175 5.67e+01 1jqlB 140 5.70e+01 c.37.1.20 63234 2pth 193 5.73e+01 2pth c.56.3.1 33793 1sznA 417 5.74e+01 b.71.1.1,c.1.8.1 106162,106163 1vybA 238 5.81e+01 d.151.1.1 108897 2c78A 405 5.81e+01 1o66A 275 5.82e+01 c.1.12.8 92547 1krhA 338 5.84e+01 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1nhcA 336 6.05e+01 b.80.1.3 91879 1fi2A 201 6.06e+01 1fi2A b.82.1.2 59845 2g7zA 282 6.11e+01 1thqA 170 6.18e+01 f.4.1.2 106920 1fp3A 402 6.28e+01 1fp3A a.102.1.3 18842 1vpt 348 6.29e+01 3mag c.66.1.25 34207 1bkjA 240 6.31e+01 1bkjA d.90.1.1 40243 1z8sA 146 6.32e+01 1oj7A 408 6.36e+01 e.22.1.2 103971 1f9aA 168 6.37e+01 1f9aA c.26.1.3 31602 1jf8A 131 6.38e+01 c.44.1.1 66621 1q7sA 117 6.52e+01 c.131.1.1 96055 1xzoA 174 6.57e+01 1p8xA 344 6.59e+01 d.109.1.1,d.109.1.1,d.109.1.1 94365,94366,94367 1i0rA 169 6.60e+01 1i0rA b.45.1.2 61489 1i0sA 169 6.60e+01 1i0rA b.45.1.2 61491 1qavA 90 6.70e+01 1qauA b.36.1.1 24777 1f74A 293 6.72e+01 1nal3 c.1.10.1 29079 1kfwA 435 6.91e+01 c.1.8.5,d.26.3.1 77376,77377 1z47A 355 7.09e+01 3mag 307 7.12e+01 3mag c.66.1.25 34205 1wy2A 351 7.15e+01 1srrA 124 7.23e+01 1dz3A c.23.1.1 31110 1vl7A 157 7.29e+01 b.45.1.1 108732 1vjuA 309 7.37e+01 d.248.1.1 100835 1y4jA 284 7.38e+01 1mldA 314 7.39e+01 2cmd c.2.1.5,d.162.1.1 30122,42089 1kxqE 120 7.39e+01 b.1.1.1 73171 1oaoA 674 7.39e+01 e.26.1.2 86744 1ob8A 135 7.43e+01 1zoiA 276 7.45e+01 1e3mA 800 7.61e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19075,32389,33746,39747 1a8s 273 7.63e+01 1brt c.69.1.12 34710 1oxsC 353 7.68e+01 b.40.6.3,c.37.1.12 87519,87520 1aky 221 7.73e+01 1zin c.37.1.1,g.41.2.1 31896,45197 1o8uA 257 7.74e+01 c.14.1.3 81194 2b34A 199 7.76e+01 1jqbA 351 7.77e+01 b.35.1.2,c.2.1.1 77151,77152 1t06A 235 7.81e+01 a.118.1.17 106194 1s2kA 206 7.87e+01 b.29.1.20 98389 2agkA 260 7.90e+01 1pkoA 139 7.94e+01 b.1.1.1 88147 1em2A 229 7.99e+01 1em2A d.129.3.2 41321 1u0sY 118 8.01e+01 c.23.1.1 107566 2c07A 285 8.03e+01 1jzuA 157 8.11e+01 b.60.1.1 84271 1cleA 534 8.14e+01 1thg c.69.1.17 34771 1tmy 120 8.14e+01 1dbwA c.23.1.1 31083 1luaA 287 8.30e+01 c.2.1.7,c.58.1.4 78216,78217 1rp0A 284 8.36e+01 1uh5A 329 8.47e+01 c.2.1.2 107840 1k4mA 213 8.49e+01 c.26.1.3 77258 1zboA 210 8.54e+01 1m3uA 264 8.56e+01 c.1.12.8 84784 1o5zA 442 8.80e+01 c.59.1.2,c.72.2.2 92530,92531 1ko3A 230 8.88e+01 d.157.1.1 90974 1yreA 197 8.94e+01 1iqoA 88 8.96e+01 d.214.1.1 71277