# List of top-scoring protein chains for T0356.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xc3A 302 1.83e-01 1xx6A 191 2.23e+00 2apoA 357 4.35e+00 2b64Y 354 4.46e+00 1u0vA 393 6.94e+00 1w1wA 430 7.75e+00 1yhpA 212 8.33e+00 1jwxA 389 9.73e+00 c.95.1.2,c.95.1.2 71920,71921 1fg4A 149 1.26e+01 1ewxA c.47.1.10 59814 1oc9A 152 1.26e+01 c.47.1.10 86797 1o6jA 150 1.26e+01 c.47.1.10 81089 1o81A 152 1.27e+01 c.47.1.10 81175 1cmlA 389 1.33e+01 1bi5A c.95.1.2,c.95.1.2 35989,35990 1bq6A 388 1.34e+01 1bi5A c.95.1.2,c.95.1.2 35987,35988 1bi5A 389 1.34e+01 1bi5A c.95.1.2,c.95.1.2 35985,35986 1chwA 389 1.36e+01 1bi5A c.95.1.2,c.95.1.2 35997,35998 1svuA 327 1.37e+01 c.66.1.26 106052 1d6iA 388 1.62e+01 1bi5A c.95.1.2,c.95.1.2 36001,36002 1uj2A 252 1.64e+01 c.37.1.6 99452 1i5gA 144 1.70e+01 1ewxA c.47.1.10 61784 1xrjA 261 1.70e+01 2c7pA 327 1.76e+01 1nz9A 58 1.88e+01 b.34.5.4 92364 1i86A 389 2.13e+01 c.95.1.2,c.95.1.2 66068,66069 2c7rA 327 2.17e+01 1bdfA 235 2.18e+01 1bdfA d.74.3.1,d.181.1.1 39727,42602 1jx2B 315 2.19e+01 c.37.1.8 67404 2fbjH 220 2.27e+01 1igtB b.1.1.1,b.1.1.2 19851,20955 1z8gA 372 2.32e+01 1oe4A 247 2.58e+01 c.18.1.3 86895 2f51A 118 2.63e+01 1d6hA 387 2.70e+01 1bi5A c.95.1.2,c.95.1.2 36005,36006 1m1hA 248 2.93e+01 b.114.1.1,d.58.42.1 78415,78416 1rzuA 485 3.10e+01 c.87.1.8 105140 1jmmA 377 3.33e+01 b.30.6.1 71749 1lwjA 441 3.33e+01 b.71.1.1,c.1.8.1 74303,74304 1tvmA 113 3.48e+01 1vdwA 254 3.60e+01 e.7.1.1 100569 2c91A 338 3.69e+01 2fu0A 160 3.92e+01 1wqaA 455 3.95e+01 1t83C 176 4.03e+01 b.1.1.4,b.1.1.4 106647,106648 1i8bA 389 4.18e+01 c.95.1.2,c.95.1.2 66078,66079 1ogyB 130 4.24e+01 a.138.1.3 92954 1e4jA 176 4.40e+01 2fcbA b.1.1.4,b.1.1.4 21785,21786 1fnlA 175 4.47e+01 2fcbA b.1.1.4,b.1.1.4 21783,21784 1aqzA 149 4.57e+01 1aqzA d.1.1.3 36238 1zorA 399 4.61e+01 1uayA 242 4.66e+01 c.2.1.2 88390 2fh9A 274 4.85e+01 1i89A 389 4.86e+01 c.95.1.2,c.95.1.2 66074,66075 1pj5A 830 4.90e+01 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1i88A 389 4.90e+01 c.95.1.2,c.95.1.2 66070,66071 1uarA 285 5.54e+01 c.46.1.2,c.46.1.2 107762,107763 1zhhB 242 5.56e+01 1oriA 343 5.58e+01 c.66.1.6 87339 1vheA 373 5.59e+01 b.49.3.1,c.56.5.4 100669,100670 1or8A 340 5.60e+01 c.66.1.6 93451 1ad1A 266 6.00e+01 1aj2 c.1.21.1 29668 2clpA 347 6.04e+01 2eueA 275 6.12e+01 1avaA 403 6.12e+01 1jdc b.71.1.1,c.1.8.1 27797,28784 1uby 367 6.13e+01 1uby a.128.1.1 19435 1orhA 353 6.14e+01 c.66.1.6 93455 1vj2A 126 6.14e+01 b.82.1.10 100796 1pnsP 83 6.34e+01 i.1.1.1 88183 1fjgP 88 6.38e+01 1emwA d.27.1.1 38444 1ubx 367 6.39e+01 1uby a.128.1.1 19439 1vr3A 191 6.49e+01 1g3qA 237 6.66e+01 1hyqA c.37.1.10 60237 1ml5S 91 7.00e+01 i.1.1.1 79274 1s1iV 148 7.06e+01 i.1.1.1 105196 2u1a 88 7.28e+01 2u1a d.58.7.1 39164 1vrgA 527 7.29e+01 1gveB 327 7.35e+01 c.1.7.1 70598 2azpA 318 7.35e+01 1gveA 327 7.46e+01 c.1.7.1 70597 1j5kA 89 7.65e+01 d.51.1.1 71565 1nmaN 388 7.75e+01 2qwc b.68.1.1 27590 1khmA 89 7.75e+01 1dt4A d.51.1.1 38809 1dqpA 230 8.21e+01 1dqnA c.61.1.1 34069 1yzyA 413 8.68e+01 1szqA 483 8.72e+01 e.44.1.1 99045 1cc1L 498 8.74e+01 1h2rL e.18.1.1 43301 2fcr 173 8.76e+01 1rcf c.23.5.1 31151 1vclA 432 8.81e+01 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 1ee0A 402 8.88e+01 1bi5A c.95.1.2,c.95.1.2 36007,36008 1lxjA 104 8.96e+01 d.58.48.1 84736