# List of top-scoring protein chains for T0356.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xc3A 302 4.61e-01 2apoA 357 2.84e+00 1xx6A 191 4.30e+00 1w1wA 430 5.74e+00 1u0vA 393 7.29e+00 1jwxA 389 8.03e+00 c.95.1.2,c.95.1.2 71920,71921 1yhpA 212 8.72e+00 1vj2A 126 9.03e+00 b.82.1.10 100796 1fg4A 149 9.05e+00 1ewxA c.47.1.10 59814 1o6jA 150 9.07e+00 c.47.1.10 81089 1o81A 152 9.11e+00 c.47.1.10 81175 1oc9A 152 9.43e+00 c.47.1.10 86797 1wqaA 455 1.14e+01 1i5gA 144 1.17e+01 1ewxA c.47.1.10 61784 1cmlA 389 1.20e+01 1bi5A c.95.1.2,c.95.1.2 35989,35990 1bq6A 388 1.22e+01 1bi5A c.95.1.2,c.95.1.2 35987,35988 1bi5A 389 1.22e+01 1bi5A c.95.1.2,c.95.1.2 35985,35986 1chwA 389 1.23e+01 1bi5A c.95.1.2,c.95.1.2 35997,35998 1xrjA 261 1.26e+01 1svuA 327 1.27e+01 c.66.1.26 106052 1uj2A 252 1.30e+01 c.37.1.6 99452 1z8gA 372 1.33e+01 1d6iA 388 1.47e+01 1bi5A c.95.1.2,c.95.1.2 36001,36002 1vdwA 254 1.53e+01 e.7.1.1 100569 2c7pA 327 1.69e+01 2f51A 118 1.71e+01 1pgs 314 1.77e+01 1pgs b.121.1.1,b.121.1.1 23653,23654 1pnf 314 1.78e+01 1pgs b.121.1.1,b.121.1.1 23655,23656 2c7rA 327 2.10e+01 1i86A 389 2.42e+01 c.95.1.2,c.95.1.2 66068,66069 1d6hA 387 2.52e+01 1bi5A c.95.1.2,c.95.1.2 36005,36006 1nz9A 58 2.59e+01 b.34.5.4 92364 1o8uA 257 3.06e+01 c.14.1.3 81194 1uayA 242 3.10e+01 c.2.1.2 88390 1g3qA 237 3.39e+01 1hyqA c.37.1.10 60237 2fbjH 220 3.44e+01 1igtB b.1.1.1,b.1.1.2 19851,20955 1avaA 403 3.76e+01 1jdc b.71.1.1,c.1.8.1 27797,28784 1ubx 367 3.86e+01 1uby a.128.1.1 19439 1szoA 257 3.90e+01 c.14.1.3 106164 1t83C 176 3.97e+01 b.1.1.4,b.1.1.4 106647,106648 1rzuA 485 4.03e+01 c.87.1.8 105140 1tvmA 113 4.09e+01 1i8bA 389 4.12e+01 c.95.1.2,c.95.1.2 66078,66079 1e4jA 176 4.28e+01 2fcbA b.1.1.4,b.1.1.4 21785,21786 1fnlA 175 4.31e+01 2fcbA b.1.1.4,b.1.1.4 21783,21784 2fswA 107 4.33e+01 1uby 367 4.34e+01 1uby a.128.1.1 19435 1i88A 389 4.35e+01 c.95.1.2,c.95.1.2 66070,66071 1vrgA 527 4.37e+01 1vheA 373 4.53e+01 b.49.3.1,c.56.5.4 100669,100670 1aqzA 149 4.61e+01 1aqzA d.1.1.3 36238 2azpA 318 4.69e+01 1i89A 389 4.87e+01 c.95.1.2,c.95.1.2 66074,66075 1z2rA 582 4.90e+01 2b64Y 354 5.05e+01 1szqA 483 5.32e+01 e.44.1.1 99045 1upaA 573 5.38e+01 c.31.1.3,c.36.1.5,c.36.1.9 99714,99715,99716 1m1hA 248 5.50e+01 b.114.1.1,d.58.42.1 78415,78416 1jmmA 377 5.83e+01 b.30.6.1 71749 2fu0A 160 6.21e+01 1ogyB 130 6.50e+01 a.138.1.3 92954 1ewkA 490 6.82e+01 1ewkA c.93.1.1 35712 2fcr 173 6.86e+01 1rcf c.23.5.1 31151 1xi6A 262 6.98e+01 2fp4A 305 6.99e+01 1eudA 311 6.99e+01 2scuA c.2.1.8,c.23.4.1 30312,31140 1clxA 347 7.04e+01 1taxA c.1.8.3 28899 1w2pA 348 7.07e+01 1w32A 348 7.08e+01 1zorA 399 7.10e+01 1ulqA 401 7.25e+01 1w2vA 348 7.32e+01 1w3hA 359 7.39e+01 1khmA 89 7.47e+01 1dt4A d.51.1.1 38809 1j5kA 89 7.53e+01 d.51.1.1 71565 1jx2B 315 7.55e+01 c.37.1.8 67404 2et6A 604 7.95e+01 1frfS 264 7.97e+01 2frvA e.19.1.1 43312 1noyA 388 8.02e+01 1clqA c.55.3.5 33713 1ttuA 477 8.06e+01 b.1.18.1,b.2.5.8,b.42.7.1 107305,107306,107307 2ag9A 164 8.25e+01 2ag4A 164 8.32e+01 1ad1A 266 8.34e+01 1aj2 c.1.21.1 29668 1rzoA 262 8.39e+01 1hq8A 123 8.49e+01 1b6e d.169.1.1 61127 1pnsP 83 8.58e+01 i.1.1.1 88183 2ew1A 201 8.59e+01 1fjgP 88 8.59e+01 1emwA d.27.1.1 38444 1nhcA 336 8.62e+01 b.80.1.3 91879 1dqpA 230 8.75e+01 1dqnA c.61.1.1 34069