Best Alignments for T0356

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1aisB/T0356-1aisB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1aisB/T0356-1aisB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7956e+008.90e-08 1aisB a.74.1.2
a.74.1.2
2fcr/T0356-2fcr-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fcr/T0356-2fcr-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.8630e+001.23e-05 1rcf c.23.5.1
1fmcA/T0356-1fmcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1fmcA/T0356-1fmcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.8335e+002.17e-09 1cydA c.2.1.2
1xn7A/T0356-1xn7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xn7A/T0356-1xn7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.4708e+007.13e-05
1gcoA/T0356-1gcoA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gcoA/T0356-1gcoA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.1188e+002.53e-09 1ybvA c.2.1.2
1o2dA/T0356-1o2dA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1o2dA/T0356-1o2dA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.7809e+002.04e-04 e.22.1.2
1lvaA/T0356-1lvaA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1lvaA/T0356-1lvaA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.1364e+005.62e-07 a.4.5.35
a.4.5.35
a.4.5.35
a.4.5.35
1z15A/T0356-1z15A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1z15A/T0356-1z15A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.0865e+003.98e-06
2liv/T0356-2liv-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2liv/T0356-2liv-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.2486e+008.19e-05 2liv c.93.1.1
1oz9A/T0356-1oz9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1oz9A/T0356-1oz9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.4778e+001.12e-04 d.92.1.15

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001