# List of top-scoring protein chains for T0356.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xx6A 191 1.96e+00 1yhpA 212 4.01e+00 1lk5A 229 5.62e+00 c.124.1.4,d.58.40.1 73960,73961 2gf5A 191 7.90e+00 1fnlA 175 8.57e+00 2fcbA b.1.1.4,b.1.1.4 21783,21784 1e4jA 176 8.63e+00 2fcbA b.1.1.4,b.1.1.4 21785,21786 1t83C 176 8.72e+00 b.1.1.4,b.1.1.4 106647,106648 1uq4A 263 1.17e+01 d.165.1.1 99777 2czdA 208 1.28e+01 1ift 263 1.28e+01 1mrj d.165.1.1 42211 1obs 267 1.33e+01 1mrj d.165.1.1 42213 1br5A 267 1.33e+01 1mrj d.165.1.1 42217 1rzoA 262 1.35e+01 1zb0A 268 1.35e+01 1oc9A 152 1.40e+01 c.47.1.10 86797 2fcr 173 1.46e+01 1rcf c.23.5.1 31151 1o6jA 150 1.48e+01 c.47.1.10 81089 1fg4A 149 1.48e+01 1ewxA c.47.1.10 59814 1o81A 152 1.48e+01 c.47.1.10 81175 1jx2B 315 1.52e+01 c.37.1.8 67404 1j1mA 268 1.54e+01 d.165.1.1 90767 1pj5A 830 1.62e+01 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1g3qA 237 1.68e+01 1hyqA c.37.1.10 60237 1i5gA 144 1.87e+01 1ewxA c.47.1.10 61784 1uq5A 263 2.16e+01 d.165.1.1 99778 1elvA 333 2.20e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 1hvxA 515 2.23e+01 1bli b.71.1.1,c.1.8.1 27721,28708 1vne 609 2.28e+01 1vns a.111.1.3 19063 1vj2A 126 2.51e+01 b.82.1.10 100796 1iduA 609 2.51e+01 1vns a.111.1.3 62303 1vnf 609 2.52e+01 1vns a.111.1.3 19067 1vns 609 2.53e+01 1vns a.111.1.3 19061 1vng 609 2.53e+01 1vns a.111.1.3 19066 2gtsA 86 2.57e+01 1snzA 344 2.89e+01 b.30.5.4 98930 1rzuA 485 3.09e+01 c.87.1.8 105140 2czgA 433 3.48e+01 1j5kA 89 3.49e+01 d.51.1.1 71565 2fc1A 361 3.51e+01 1vnh 609 3.61e+01 1vns a.111.1.3 19062 1orfA 234 3.65e+01 b.47.1.2 87338 1d02A 202 3.78e+01 1d02A c.52.1.8 33313 2f51A 118 3.90e+01 1qexA 288 3.97e+01 1qexA b.32.1.1 24425 2et6A 604 4.20e+01 1hkfA 122 4.32e+01 b.1.1.1 83553 1fezA 256 4.41e+01 1fezA c.108.1.3 43343 1pjkA 334 4.53e+01 d.144.1.7 88122 1jwhA 337 4.54e+01 d.144.1.7 71913 1dqpA 230 4.59e+01 1dqnA c.61.1.1 34069 1wxaA 116 4.65e+01 1na7A 329 4.75e+01 d.144.1.7 91752 1rqlA 267 4.85e+01 c.108.1.3 97750 1zsqA 528 4.94e+01 1u6lA 149 4.97e+01 1zxoA 291 5.01e+01 2c7pA 327 5.02e+01 1svuA 327 5.09e+01 c.66.1.26 106052 1qz9A 416 5.21e+01 c.67.1.3 96621 1wsuA 124 5.29e+01 1f16A 192 5.32e+01 1f16A f.1.4.1 43400 1uarA 285 5.66e+01 c.46.1.2,c.46.1.2 107762,107763 2c7rA 327 5.67e+01 1lw3A 657 5.85e+01 b.55.1.8,c.45.1.3 91152,91153 1ymiA 334 5.89e+01 1t5iA 172 6.09e+01 c.37.1.19 106450 1xt8A 292 6.10e+01 1kyfA 247 6.31e+01 b.1.10.1,d.105.1.1 73220,73221 1swvA 267 6.34e+01 1khmA 89 6.43e+01 1dt4A d.51.1.1 38809 1vm6A 228 6.48e+01 c.2.1.3,d.81.1.3 108876,108877 1b35D 57 6.56e+01 1b35D b.121.4.1 83038 1x4aA 109 6.96e+01 1ukcA 522 7.35e+01 c.69.1.17 107911 1mr3F 181 7.50e+01 c.37.1.8 79422 1twdA 256 7.57e+01 c.1.30.1 107397 2c30A 321 7.59e+01 1wd8A 670 7.68e+01 b.2.9.1,b.6.1.6,d.126.1.5 109237,109238,109239 2dexX 671 7.69e+01 1wdaA 670 7.69e+01 b.2.9.1,b.6.1.6,d.126.1.5 109243,109244,109245 1ecfA 504 7.73e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1nhcA 336 8.03e+01 b.80.1.3 91879 1m7vA 363 8.05e+01 d.174.1.1 78748 1rdfA 267 8.28e+01 c.108.1.3 104884 1y7pA 223 8.37e+01 1m2pA 325 8.42e+01 d.144.1.7 84758 1om1A 332 8.43e+01 d.144.1.7 93347 1m2rA 327 8.43e+01 d.144.1.7 84760 1b9kA 238 8.57e+01 1qtsA b.1.10.1,d.105.1.1 22315,40791 1rzsA 61 8.61e+01 a.35.1.2 105139 5pep 326 8.62e+01 1smrA b.50.1.2 26845 2gar 212 8.74e+01 2gar c.65.1.1 34161 1ehwA 162 8.80e+01 1npk d.58.6.1 39088 1ionA 243 8.99e+01 c.37.1.10 62633