CreatePredAlphaCost pred_alpha2k alpha11 T0355.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0355.t04.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha06 alpha11 T0355.t06.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 15 near_backbone 5 way_back 5 dry5 15 dry6.5 20 dry8 15 dry12 5 \
	phobic_fit 2 \
	sidechain 5 \
	n_ca_c	5 bad_peptide 10 \
	bystroff 5 \
	soft_clashes 20  backbone_clashes 2 \
	break 50  \
	pred_alpha2k 2 \
	pred_alpha04 2 \
	pred_alpha06 2 \
	constraints 10 \
	hbond_geom 5 \
	hbond_geom_backbone 10 \
	hbond_geom_beta 50 \
	hbond_geom_beta_pair 100 \
	missing_atoms 1 \
	maybe_metal 0.5 \
	maybe_ssbond 1

// remove maybe_ssbond weight if protein known to be in reducing environment.
// remove maybe_metal weight if protein known to have disulfides or
//	known not to bind metal ions.

// Add the following for extra-cellular proteins:
#	known_ssbond 0.5	# and put ssbond command in constraints file

// For comparative modeling, increase weight of break and hbond_geom...

// put any constraints here, such as helix constraints, strand constraints,
//	sheet constraints, ssbonds, hbonds, or just arbitrary pairs of atoms.

include T0355.dssp-ehl2.constraints
//include T0355.undertaker-align.sheets
//include rr.constraints

#sheet constraints from conformation 0 T0355-1vh7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m:1vh7A
SheetConstraint (T0355)K20 (T0355)M25	(T0355)S244 (T0355)A249	hbond (T0355)A21	15.1339
SheetConstraint (T0355)I23 (T0355)P29	(T0355)G63 (T0355)H69	hbond (T0355)G24	15.1339
SheetConstraint (T0355)G63 (T0355)N68	(T0355)P102 (T0355)V107	hbond (T0355)L64	15.1339
SheetConstraint (T0355)G104 (T0355)N106	(T0355)F126 (T0355)R128	hbond (T0355)I105	15.1339
SheetConstraint (T0355)F126 (T0355)N130	(T0355)H161 (T0355)F165	hbond (T0355)I127	15.1339
SheetConstraint (T0355)I162 (T0355)S168	(T0355)D196 (T0355)G202	hbond (T0355)V164	15.1339
SheetConstraint (T0355)S168 (T0355)K171	(T0355)I177 (T0355)A174	hbond (T0355)H169	15.1339
SheetConstraint (T0355)G197 (T0355)T201	(T0355)P224 (T0355)G228	hbond (T0355)V198	15.1339
SheetConstraint (T0355)L225 (T0355)G228	(T0355)S244 (T0355)I247	hbond (T0355)V227	15.1339