Best Alignments for T0355

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1rd5A/T0355-1rd5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1rd5A/T0355-1rd5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.4722e-231.14e-107
1qopA/T0355-1qopA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1qopA/T0355-1qopA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.6595e-235.80e-113 2tysA c.1.2.4
1tqjA/T0355-1tqjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1tqjA/T0355-1tqjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4424e-155.19e-76 c.1.2.2
2fliA/T0355-2fliA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fliA/T0355-2fliA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.9416e-132.14e-71
1xi3A/T0355-1xi3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xi3A/T0355-1xi3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.8418e-122.53e-64 c.1.3.1
1vizA/T0355-1vizA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vizA/T0355-1vizA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.7251e-127.48e-60 c.1.4.1
2f6uA/T0355-2f6uA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2f6uA/T0355-2f6uA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.0647e-121.12e-51
1tqxA/T0355-1tqxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1tqxA/T0355-1tqxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.8415e-111.37e-61
1thfD/T0355-1thfD-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1thfD/T0355-1thfD-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.4336e-111.85e-62 1thfD c.1.2.1
1vzwA/T0355-1vzwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vzwA/T0355-1vzwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.3967e-104.55e-68

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001