Best Alignments for T0355

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1qopA/T0355-1qopA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1qopA/T0355-1qopA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.4757e-325.80e-113 2tysA c.1.2.4
1rd5A/T0355-1rd5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1rd5A/T0355-1rd5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.7793e-321.14e-107
1tqjA/T0355-1tqjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1tqjA/T0355-1tqjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2133e-225.19e-76 c.1.2.2
2fliA/T0355-2fliA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fliA/T0355-2fliA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.2763e-192.14e-71
1xc4A/T0355-1xc4A-t04-global-adpstyle1.a2m 1xc4A/T0355-1xc4A-t04-global-adpstyle1.al 3.8044e-184.06e-68
1wq5A/T0355-1wq5A-t04-global-adpstyle1.a2m 1wq5A/T0355-1wq5A-t04-global-adpstyle1.al 3.9288e-184.06e-68
1tjpA/T0355-1tjpA-t04-global-adpstyle1.a2m 1tjpA/T0355-1tjpA-t04-global-adpstyle1.al 4.0574e-184.06e-68
1xcfA/T0355-1xcfA-t04-global-adpstyle1.a2m 1xcfA/T0355-1xcfA-t04-global-adpstyle1.al 5.9060e-184.06e-68
1tjrA/T0355-1tjrA-t04-global-adpstyle1.a2m 1tjrA/T0355-1tjrA-t04-global-adpstyle1.al 1.4044e-174.06e-68
1tqxA/T0355-1tqxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1tqxA/T0355-1tqxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.3824e-171.37e-61

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001