Best Alignments for T0354

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1y2qA/T0354-1y2qA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1y2qA/T0354-1y2qA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.5428e-011.27e-04
1v6tA/T0354-1v6tA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1v6tA/T0354-1v6tA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0848e+003.01e-10
1mp9A/T0354-1mp9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1mp9A/T0354-1mp9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1497e+002.27e-10 d.129.1.1
d.129.1.1
2gfgA/T0354-2gfgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gfgA/T0354-2gfgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.3207e+001.28e-07
1vgjA/T0354-1vgjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vgjA/T0354-1vgjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.4926e+002.28e-09
1vdxA/T0354-1vdxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vdxA/T0354-1vdxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.0807e+002.17e-11
1jdqA/T0354-1jdqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1jdqA/T0354-1jdqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.4342e+002.99e-04 d.68.3.3
1usgA/T0354-1usgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1usgA/T0354-1usgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.6629e+006.64e-11 c.93.1.1
1ufkA/T0354-1ufkA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ufkA/T0354-1ufkA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.1192e+001.81e-08 c.66.1.39
1dlyA/T0354-1dlyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1dlyA/T0354-1dlyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.4039e+001.05e-03 1dlyA a.1.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001