# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zxmA 400 8.36e-01 1tqjA 230 1.20e+00 c.1.2.2 107228 1gesA 450 1.72e+00 3grs c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1rz3A 201 2.75e+00 c.37.1.6 98132 1y2qA 143 2.84e+00 1v6tA 255 3.69e+00 1tde 316 3.93e+00 1trb c.3.1.5,c.3.1.5 30531,30532 1rztA 331 4.09e+00 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 1jmoA 480 4.23e+00 e.1.1.1 77138 1trb 320 4.51e+00 1trb c.3.1.5,c.3.1.5 30529,30530 2ewtA 71 4.79e+00 1vdxA 184 4.88e+00 1vgjA 184 5.42e+00 1pvgA 418 5.44e+00 d.14.1.3,d.122.1.2 95161,95162 2bcqA 335 5.56e+00 1rpjA 288 5.78e+00 2dri c.93.1.1 35656 1epuA 591 6.61e+00 1dn1A e.25.1.1 43358 1v9kA 228 6.61e+00 d.265.1.3 108449 1xpiA 231 6.65e+00 1w25A 459 7.25e+00 1dlyA 164 7.78e+00 1dlyA a.1.1.1 14983 1xsnA 335 7.79e+00 1vzsA 76 8.05e+00 f.45.1.1 108972 1qhsA 178 9.15e+00 1qhsA c.37.1.3 31938 1gudA 288 1.08e+01 c.93.1.1 83326 1wy7A 207 1.08e+01 1lvl 458 1.13e+01 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 1wqaA 455 1.13e+01 1l3iA 192 1.19e+01 c.66.1.22 77676 1xniA 118 1.19e+01 1ug7A 128 1.48e+01 a.24.24.1 107824 1ssfA 156 1.51e+01 b.34.9.1,b.34.9.1 105982,105983 1gnlA 544 1.60e+01 e.26.1.1 70287 1pczA 191 1.62e+01 1ytbA d.129.1.1,d.129.1.1 41292,41293 1rypH 205 1.76e+01 d.153.1.4 41876 1qhxA 178 1.80e+01 1qhsA c.37.1.3 31936 1e1dA 553 1.82e+01 1e1dA e.26.1.1 43363 1cqxA 403 1.82e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1kk1A 410 1.84e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1y7rA 133 1.98e+01 1vljA 407 2.01e+01 e.22.1.2 108832 1s69A 124 2.06e+01 a.1.1.1 105305 1hn2A 159 2.16e+01 b.60.1.1 65890 1gt1A 159 2.17e+01 b.60.1.1 90515 1pt7A 437 2.20e+01 c.123.1.1 95093 1wjtA 103 2.37e+01 2fx2 147 2.39e+01 1rcf c.23.5.1 31158 1dgjA 907 2.41e+01 1alo a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 17909,37694,38585,41415 1gv4A 528 2.47e+01 c.3.1.5,c.3.1.5,d.87.1.1 70589,70590,70591 1ft5A 211 2.58e+01 1bvb a.138.1.3 19681 1obpA 159 2.64e+01 1obpA b.60.1.1 27092 1aisA 182 2.71e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1e2uA 553 2.79e+01 1e1dA e.26.1.1 43362 2fcr 173 2.90e+01 1rcf c.23.5.1 31151 1rtxA 123 2.90e+01 a.1.1.1 97827 2fnuA 375 2.90e+01 1gntA 553 2.92e+01 e.26.1.1 70290 1rpxA 230 2.93e+01 1rpxA c.1.2.2 28536 1w96A 554 2.95e+01 2bjiA 277 2.99e+01 1bu5A 147 3.04e+01 5nul c.23.5.1 31155 1ufkA 254 3.21e+01 c.66.1.39 99340 1fit 147 3.22e+01 1fit d.13.1.1 37499 1yz7A 188 3.25e+01 2abwA 227 3.26e+01 1s0uA 408 3.27e+01 b.43.3.1,b.44.1.1,c.37.1.8 98302,98303,98304 1rlmA 271 3.28e+01 1m6iA 493 3.30e+01 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1cznA 169 3.47e+01 1rcf c.23.5.1 31181 1y8qB 640 3.61e+01 1fvuB 125 3.62e+01 1ixxB d.169.1.1 42346 1wijA 140 3.70e+01 1mp9A 198 3.79e+01 d.129.1.1,d.129.1.1 91385,91386 1ofv 169 3.82e+01 1rcf c.23.5.1 31184 1atnD 260 3.88e+01 3dni d.151.1.1 41793 1i06A 180 4.02e+01 1mup b.60.1.1 27131 1bvb 211 4.03e+01 1bvb a.138.1.3 19683 1f4pA 147 4.04e+01 5nul c.23.5.1 59651 1akq 147 4.05e+01 5nul c.23.5.1 31159 1h8eG 272 4.15e+01 1e79G c.49.2.1 60756 3dni 260 4.18e+01 3dni d.151.1.1 41791 1jic 62 4.26e+01 1azpA b.34.13.1 37462 1sso 62 4.28e+01 1azpA b.34.13.1 37463 2fliA 220 4.29e+01 1rl6A 177 4.32e+01 1rl6A d.141.1.1,d.141.1.1 41473,41474 1veaA 148 4.48e+01 d.275.1.1 108529 1i05A 180 4.52e+01 1mup b.60.1.1 27130 1wmqA 147 4.56e+01 1mi8A 158 4.58e+01 b.86.1.2 91279 1q7eA 428 4.60e+01 c.123.1.1 96035 1v8bA 479 4.79e+01 1j9jA 247 4.87e+01 c.106.1.1 62758 1jdqA 98 4.89e+01 d.68.3.3 66559 1xt9A 212 5.09e+01 1d3uA 181 5.10e+01 1ytbA d.129.1.1,d.129.1.1 41290,41291 1zowA 313 5.12e+01 1jwiB 125 5.24e+01 d.169.1.1 67384 1q5qA 259 5.25e+01 d.153.1.4 95904 1jv4A 162 5.31e+01 b.60.1.1 67343 1b3mA 389 5.32e+01 1b3mA 1j34B 123 5.32e+01 d.169.1.1 84049 2ci1A 275 5.33e+01 1ltqA 301 5.56e+01 c.108.1.9,c.37.1.1 78208,78209 2c8vA 288 5.70e+01 1aijH 260 5.79e+01 6prcH b.41.1.1,f.23.10.1 25466,43463 1duxC 94 5.81e+01 1awcA a.4.5.21 16170 1rlmB 271 5.90e+01 1azl 147 5.98e+01 5nul c.23.5.1 31154 1mdbA 539 6.02e+01 e.23.1.1 79008 1omwA 689 6.06e+01 a.91.1.1,b.55.1.1,d.144.1.7 87086,87087,87088 1rzhH 260 6.17e+01 b.41.1.1,f.23.10.1 98162,98163 1c8cA 64 6.17e+01 1azpA b.34.13.1 59084 1hlgA 371 6.22e+01 1hlgA c.69.1.6 34656 2lbp 346 6.26e+01 2liv c.93.1.1 35709 1jihA 531 6.34e+01 d.240.1.1,e.8.1.7 90374,90375 1vjtA 483 6.36e+01 c.2.1.5,d.162.1.2 100833,100834 1w36D 608 6.39e+01 1cx4A 305 6.41e+01 b.82.3.2,b.82.3.2 59099,59100 1v5vA 401 6.44e+01 1yoxA 250 6.46e+01 1b5eA 246 6.48e+01 1b5eA d.117.1.1 41056 1pi1A 185 6.54e+01 a.29.7.1 94699 2bkrA 212 6.57e+01 1q2lA 939 6.77e+01 1akw 147 6.78e+01 5nul c.23.5.1 31153 1usgA 346 6.79e+01 c.93.1.1 99864 2atxA 194 6.82e+01 2fhi 147 6.84e+01 1fit d.13.1.1 37505 3grs 478 6.84e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1rcf 169 6.85e+01 1rcf c.23.5.1 31170 1q1rA 431 6.97e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1ezwA 349 7.03e+01 1ezwA c.1.16.3 29558 1mup 166 7.11e+01 1mup b.60.1.1 27133 1b4o 62 7.12e+01 1azpA b.34.13.1 37464 1j9lA 247 7.12e+01 c.106.1.1 62762 2erxA 172 7.31e+01 1qovH 260 7.34e+01 6prcH b.41.1.1,f.23.10.1 25464,43457 1akt 147 7.46e+01 5nul c.23.5.1 31157 2czdA 208 7.48e+01 1gpjA 404 7.52e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1z4rA 168 7.57e+01 1mwmA 320 7.68e+01 c.55.1.1,c.55.1.1 79580,79581 1l9fA 389 7.70e+01 c.3.1.2,d.16.1.3 73716,73717 1r9gA 216 7.72e+01 c.23.16.1 97258 1ixxB 123 7.78e+01 1ixxB d.169.1.1 42336 1ystH 260 7.85e+01 6prcH b.41.1.1,f.23.10.1 25482,43511 1a8p 258 7.90e+01 1fdr b.43.4.2,c.25.1.1 25654,31544 1atiA 505 7.94e+01 1atiA c.51.1.1,d.104.1.1 33196,40745 2d1pB 119 7.96e+01 1vlbA 907 8.06e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1hlrA 907 8.08e+01 1gkkA 297 8.10e+01 c.69.1.2 65248 1g73A 162 8.11e+01 1fewA a.7.4.1 16332 2dri 271 8.13e+01 2dri c.93.1.1 35637 1ipiA 123 8.20e+01 c.52.1.18 66255 2gfgA 193 8.25e+01 1axn 323 8.26e+01 1avc a.65.1.1 18149 2a40B 260 8.27e+01 2dnjA 260 8.40e+01 3dni d.151.1.1 41790 1wb4A 297 8.43e+01 1nh9A 87 8.51e+01 d.68.6.1 91878 1irxA 523 8.53e+01 a.97.1.2,c.26.1.1 71378,71379 1js3A 486 8.57e+01 c.67.1.6 67215 1j9eA 147 8.63e+01 c.23.5.1 62756 1z15A 344 8.68e+01 1bvyF 191 8.74e+01 1bvyF c.23.5.1 31207 1moq 368 8.74e+01 1moq c.80.1.1 35302 1ka1A 357 8.77e+01 e.7.1.1 68369 4gr1 478 8.88e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30461,30462,40162 1rck 106 8.88e+01 9rnt d.1.1.4 36053 1ki9A 192 8.92e+01 c.37.1.1 84404 1df3A 162 8.96e+01 1mup b.60.1.1 27134