# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gfgA 193 1.83e-01 1y2qA 143 3.22e-01 1vpjA 192 3.49e-01 1vmbA 140 6.34e-01 1mp9A 198 1.15e+00 d.129.1.1,d.129.1.1 91385,91386 1vetB 125 1.70e+00 d.110.7.1 108554 1u94A 356 1.70e+00 c.37.1.11,d.48.1.1 107743,107744 1gntA 553 1.82e+00 e.26.1.1 70290 1vljA 407 1.84e+00 e.22.1.2 108832 1ockA 412 2.86e+00 c.117.1.1 86802 1ufkA 254 3.92e+00 c.66.1.39 99340 1jl0A 334 4.24e+00 1jenA d.156.1.1 63155 1s69A 124 4.59e+00 a.1.1.1 105305 1v5vA 401 4.64e+00 1dlyA 164 4.77e+00 1dlyA a.1.1.1 14983 1gnlA 544 4.98e+00 e.26.1.1 70287 1v6tA 255 5.21e+00 1g6hA 257 5.39e+00 1gajA c.37.1.12 60318 1wy7A 207 5.53e+00 1wqaA 455 5.73e+00 1xqaA 113 6.00e+00 1oz9A 150 6.38e+00 d.92.1.15 93808 1tzjA 338 6.40e+00 1gwyA 175 6.78e+00 b.97.1.1 83356 1nv8A 284 6.89e+00 c.66.1.30 86224 2ci1A 275 6.90e+00 1u7iA 136 6.94e+00 d.32.1.7 107724 1m55A 197 7.11e+00 d.89.1.3 74469 1y0uA 96 7.83e+00 2a35A 215 8.27e+00 2acvA 463 8.30e+00 1kyqA 274 8.46e+00 c.2.1.11,e.37.1.1 73281,73282 1u14A 172 9.17e+00 c.51.4.3 107579 1cliA 345 9.40e+00 1cliA d.79.4.1,d.139.1.1 39816,41459 1fx2A 235 9.99e+00 1fx2A d.58.29.1 39430 1xmxA 385 1.02e+01 1gudA 288 1.06e+01 c.93.1.1 83326 1us5A 314 1.10e+01 c.94.1.1 99856 1qtoA 122 1.13e+01 1bylA d.32.1.2 38494 1xxlA 239 1.14e+01 1twuA 139 1.14e+01 d.32.1.8 107413 1vhwA 253 1.15e+01 c.56.2.1 100706 1n3yA 198 1.21e+01 c.62.1.1 79976 1t5bA 201 1.22e+01 c.23.5.3 106433 2abwA 227 1.23e+01 1x7yB 342 1.28e+01 1aisA 182 1.30e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1tqjA 230 1.32e+01 c.1.2.2 107228 1qhtA 775 1.33e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 1j98A 157 1.35e+01 1j98A d.185.1.2 62755 1pvgA 418 1.36e+01 d.14.1.3,d.122.1.2 95161,95162 2bfdB 345 1.37e+01 1vhoA 346 1.40e+01 b.49.3.1,c.56.5.4 100694,100695 2bcqA 335 1.40e+01 1gx5A 536 1.40e+01 e.8.1.4 70682 1ka1A 357 1.43e+01 e.7.1.1 68369 1eziA 228 1.48e+01 1eyrA c.68.1.13 34512 1vgjA 184 1.51e+01 1b5eA 246 1.53e+01 1b5eA d.117.1.1 41056 1rp4A 389 1.57e+01 a.227.1.1 105027 1fyeA 229 1.60e+01 1fyeA c.23.16.4 31477 1jv1A 505 1.64e+01 c.68.1.5 71892 1tv8A 340 1.70e+01 c.1.28.3 107352 2bb6A 414 1.73e+01 1ii7A 333 1.74e+01 1ii7A d.159.1.4 62415 1o59A 355 1.78e+01 b.18.1.22,b.18.1.22 92495,92496 1o2dA 371 1.80e+01 e.22.1.2 86591 1cc8A 73 1.88e+01 1cc8A d.58.17.1 39343 8abp 306 1.91e+01 8abp c.93.1.1 35647 2fgeA 995 1.91e+01 1nvmB 312 1.93e+01 c.2.1.3,d.81.1.1 86251,86252 1fm0E 150 1.93e+01 1fmaE d.41.5.1 38629 1obbA 480 1.99e+01 c.2.1.5,d.162.1.2 86760,86761 1xx1A 285 2.03e+01 1oltA 457 2.04e+01 c.1.28.2 93334 1wwhA 119 2.10e+01 1a73A 163 2.11e+01 1a73A d.4.1.3 37145 1svy 114 2.14e+01 1svy d.109.1.1 40831 1r89A 437 2.17e+01 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 2bkrA 212 2.18e+01 1r3sA 367 2.20e+01 c.1.22.1 96963 1tzfA 259 2.21e+01 c.68.1.13 107476 1e8pA 46 2.22e+01 g.55.1.1 59385 1ylxA 103 2.23e+01 1dosA 358 2.30e+01 1dosA c.1.10.2 29175 1vr6A 350 2.38e+01 1nm2A 317 2.39e+01 c.19.1.1,d.58.23.1 80654,80655 1kg0C 136 2.52e+01 d.169.1.1 72445 1tljA 213 2.62e+01 d.282.1.1 107126 1z4rA 168 2.63e+01 1lc5A 364 2.65e+01 c.67.1.1 73827 1luaA 287 2.67e+01 c.2.1.7,c.58.1.4 78216,78217 1lssA 140 2.73e+01 c.2.1.9 74246 1twiA 434 2.78e+01 b.49.2.3,c.1.6.1 107399,107400 2bvfA 459 2.80e+01 1fjgI 128 2.84e+01 1fjfI d.14.1.1 37559 1u9iA 519 2.86e+01 1wy2A 351 2.91e+01 1gheA 177 2.97e+01 d.108.1.1 76222 1v37A 177 2.98e+01 2gf6A 135 2.99e+01 1b24A 188 3.15e+01 1b24A d.95.2.1,d.95.2.1 40573,40574 1gxjA 186 3.29e+01 d.215.1.1 70707 1tk9A 188 3.37e+01 c.80.1.3 107082 1iab 200 3.38e+01 1iae d.92.1.8 40312 1avyA 74 3.45e+01 1avyB h.1.17.1 45656 1r85A 379 3.45e+01 c.1.8.3 104839 2asfA 137 3.47e+01 1zetA 388 3.58e+01 1vkhA 273 3.58e+01 c.69.1.32 108662 2bjiA 277 3.59e+01 2cx1A 187 3.61e+01 1y8qB 640 3.65e+01 1jg5A 83 3.66e+01 d.205.1.1 66666 1m0dA 138 3.76e+01 c.52.1.17 74354 1zczA 464 3.80e+01 1jyhA 157 3.84e+01 d.60.1.3 71956 1ivnA 190 3.85e+01 c.23.10.5 83719 1ow1A 195 3.96e+01 b.131.1.3 93625 1ayaA 101 3.97e+01 1qadA d.93.1.1 40460 1v60A 123 4.07e+01 1n9lA 109 4.10e+01 d.110.3.6 85468 1xp8A 366 4.14e+01 1fvuB 125 4.20e+01 1ixxB d.169.1.1 42346 1v7pC 200 4.25e+01 c.62.1.1 108408 1vdmA 153 4.26e+01 1xviA 275 4.26e+01 1gy7A 125 4.37e+01 d.17.4.2 70738 1y1pA 342 4.43e+01 2audA 257 4.43e+01 1g3qA 237 4.49e+01 1hyqA c.37.1.10 60237 1r8eA 278 4.51e+01 a.6.1.3,d.60.1.1 104843,104844 1qnaA 200 4.54e+01 1ytbA d.129.1.1,d.129.1.1 41226,41227 2aalA 131 4.55e+01 2pia 321 4.58e+01 2pia b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1nkiA 135 4.63e+01 d.32.1.2 91941 2g7zA 282 4.66e+01 1knyA 253 4.74e+01 1knyA a.24.16.1,d.218.1.1 75896,75897 1kv7A 488 4.74e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 1za7A 165 4.82e+01 2b5iD 217 4.92e+01 1ls1A 295 4.97e+01 a.24.13.1,c.37.1.10 78170,78171 1ewkA 490 5.02e+01 1ewkA c.93.1.1 35712 1cg2A 393 5.06e+01 1cg2A c.56.5.4,d.58.19.1 33844,39360 1wd3A 482 5.15e+01 b.29.1.21,b.42.8.1 109233,109234 2d1uA 104 5.16e+01 1pt6A 213 5.28e+01 c.62.1.1 95091 2a2kA 175 5.32e+01 1wu7A 434 5.35e+01 1mjhA 162 5.37e+01 1mjhA c.26.2.4 31639 1fjhA 257 5.46e+01 1fjhB c.2.1.2 29870 2gdjA 264 5.58e+01 1xiyA 182 5.59e+01 1ekgA 127 5.59e+01 1dlxA d.82.2.1 40021 1vq3A 94 5.63e+01 1ymkA 175 5.65e+01 1p5fA 189 5.71e+01 c.23.16.2 94142 1gefA 123 5.73e+01 1gefA c.52.1.18 60465 1sgvA 316 5.76e+01 b.122.1.1,d.265.1.2 98858,98859 2fuvA 549 5.77e+01 1v8aA 265 5.81e+01 c.72.1.2 100494 2cc6A 68 5.86e+01 1mp8A 281 5.97e+01 d.144.1.7 91384 1tg0A 68 6.02e+01 1t95A 240 6.03e+01 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1sw5A 275 6.07e+01 c.94.1.1 106069 1xizA 159 6.12e+01 1ymqA 261 6.24e+01 1xzoA 174 6.26e+01 1s0yA 76 6.29e+01 d.80.1.1 98314 1vimA 200 6.34e+01 c.80.1.3 100758 1vjqA 79 6.38e+01 k.43.1.1 100830 1rz3A 201 6.39e+01 c.37.1.6 98132 1j34B 123 6.40e+01 d.169.1.1 84049 1vixA 420 6.46e+01 c.56.5.4,d.58.19.1 100777,100778 1c9kA 180 6.51e+01 1c9kB c.37.1.11 32363 1s9rA 410 6.52e+01 d.126.1.4 98758 2ca6A 386 6.52e+01 1u7eB 154 6.62e+01 2f6uA 234 6.69e+01 1xtqA 177 6.69e+01 1uwkA 557 6.78e+01 e.51.1.1 108065 1b9hA 388 6.85e+01 1b9hA c.67.1.4 34488 1g5hA 454 6.86e+01 1g5hA c.51.1.1,d.104.1.1 60270,60271 1wojA 214 6.94e+01 1tvlA 454 6.97e+01 c.1.16.4 107366 1ne7A 289 7.00e+01 c.124.1.1 91833 1f3uB 171 7.10e+01 1f3uB b.65.1.1 27525 1ok7A 366 7.14e+01 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 1usgA 346 7.14e+01 c.93.1.1 99864 1fjgJ 105 7.15e+01 1fjfJ d.58.15.1 39330 1t4bA 367 7.16e+01 c.2.1.3,d.81.1.1 106406,106407 1x6vA 630 7.20e+01 1pk6B 132 7.26e+01 b.22.1.1 94802 1ddwA 120 7.39e+01 1evhA b.55.1.4 27001 1x13A 401 7.39e+01 1wl8A 189 7.42e+01 1j8mF 297 7.44e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1y7rA 133 7.47e+01 1opd 85 7.54e+01 1ptf d.94.1.1 40560 1nf9A 207 7.56e+01 c.33.1.3 85631 2ewtA 71 7.61e+01 1oqvA 192 7.65e+01 d.24.1.2 87320 1e19A 314 7.68e+01 1b7bA c.73.1.1 34967 1xr4A 509 7.77e+01 1vquA 374 7.79e+01 1qb7A 236 7.79e+01 1qb7A c.61.1.1 34087 1ugjA 141 7.80e+01 b.41.1.3 107826 1qfjA 232 7.87e+01 1qfjA b.43.4.2,c.25.1.1 25655,31545 1uy4A 145 7.88e+01 b.18.1.10 108131 1zemA 262 7.90e+01 1rypL 212 7.95e+01 d.153.1.4 41880 2f5gA 133 7.99e+01 1uc2A 481 8.03e+01 d.261.1.1 99161 2c8vA 288 8.07e+01 1rqbA 539 8.11e+01 a.5.7.2,c.1.10.5 105057,105058 1lfpA 249 8.15e+01 e.39.1.1 73885 1u02A 239 8.19e+01 c.108.1.15 107538 1gpeA 587 8.24e+01 1gpeA c.3.1.2,d.16.1.1 30387,37951 1oboA 169 8.25e+01 c.23.5.1 86776 1qczA 169 8.28e+01 1qczA c.23.8.1 31276 1g2iA 166 8.29e+01 1g2iA c.23.16.2 31438 1d2sA 170 8.29e+01 1d2sA b.29.1.4 24221 1ooeA 236 8.39e+01 c.2.1.2 87196 1ejdA 419 8.41e+01 1uae d.68.2.2 39576 1qysA 106 8.44e+01 k.41.1.1 96603 1wqsA 173 8.55e+01 1u24A 337 8.55e+01 1mugA 168 8.58e+01 1mugA c.18.1.2 31030 1jx6A 342 8.58e+01 c.93.1.1 67406 1vkyA 347 8.59e+01 e.53.1.1 108696 1kk1A 410 8.60e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1zpvA 91 8.61e+01 2bvcA 486 8.61e+01 1rsgA 516 8.63e+01 1zmdA 474 8.63e+01 2asbA 251 8.65e+01 2dbbA 151 8.71e+01 1rypA 243 8.82e+01 1pmaA d.153.1.4 41932 1w41A 101 8.85e+01 1xrkA 124 8.97e+01 1o7fA 469 8.99e+01 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133